Wall clock time and date at job start Tue Mar 31 2020 01:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48502 * 109.47211 * 239.99863 * 3 2 1 5 5 H 1.48504 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47393 * 119.99839 * 3 2 1 7 7 C 1.37876 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46913 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47277 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47267 * 180.02562 * 11 10 9 13 13 C 1.38435 * 119.99953 * 180.02562 * 12 11 10 14 14 N 1.30227 * 125.58953 * 359.69728 * 13 12 11 15 15 N 1.26260 * 117.65067 * 179.75584 * 14 13 12 16 16 C 1.30384 * 116.38007 * 0.54334 * 15 14 13 17 17 C 1.47841 * 126.14324 * 179.69447 * 16 15 14 18 18 C 1.42474 * 126.96344 * 0.02562 * 17 16 15 19 19 C 1.35158 * 103.93205 * 179.97438 * 18 17 16 20 20 O 1.34093 * 106.73852 * 359.97438 * 19 18 17 21 21 N 1.20902 * 111.89509 * 359.75051 * 20 19 18 22 22 S 1.71280 * 125.58587 * 179.97438 * 13 12 11 23 23 H 0.97005 * 120.00528 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46872 * 60.00566 * 9 7 2 25 25 H 1.08992 * 109.47574 * 299.99976 * 9 7 2 26 26 H 1.09004 * 109.46840 * 59.99974 * 10 9 7 27 27 H 1.09005 * 109.47310 * 300.00364 * 10 9 7 28 28 H 1.09004 * 109.47330 * 60.00123 * 11 10 9 29 29 H 1.09005 * 109.47124 * 300.00327 * 11 10 9 30 30 H 0.96999 * 119.99984 * 359.97438 * 12 11 10 31 31 H 1.07996 * 128.03307 * 0.02562 * 18 17 16 32 32 H 1.08001 * 126.62897 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9870 -0.0001 12 7 2.4325 -6.1005 0.0005 13 6 1.9711 -7.4057 -0.0005 14 7 0.7200 -7.7672 0.0037 15 7 0.4676 -9.0043 -0.0027 16 6 1.4963 -9.8055 -0.0019 17 6 1.4506 -11.2832 -0.0021 18 6 0.2863 -12.1043 -0.0037 19 6 0.7764 -13.3639 -0.0038 20 8 2.1132 -13.2582 -0.0028 21 7 2.4742 -12.1043 -0.0071 22 16 2.9521 -8.8097 -0.0005 23 1 -0.4851 0.8400 -0.0004 24 1 0.6249 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8720 -3.6042 0.8906 27 1 2.8721 -3.6043 -0.8894 28 1 0.8541 -5.0446 -0.8904 29 1 0.8535 -5.0450 0.8897 30 1 3.3862 -5.9232 0.0008 31 1 -0.7477 -11.7927 -0.0055 32 1 0.2024 -14.2787 -0.0044 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287851542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:21 Heat of formation + Delta-G solvation = 97.228310 kcal Electronic energy + Delta-G solvation = -17691.596803 eV Core-core repulsion = 14588.836641 eV Total energy + Delta-G solvation = -3102.760162 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.00559 -42.15979 -38.27746 -35.86570 -35.33286 -33.48835 -32.79759 -31.12779 -28.93349 -27.10973 -25.32377 -24.35404 -23.29843 -22.38721 -21.13301 -20.28406 -19.13448 -18.69951 -18.47531 -17.83360 -17.14262 -16.83552 -16.52892 -16.11055 -15.72903 -14.81196 -14.39633 -14.29214 -14.13619 -14.09255 -13.76904 -12.91750 -12.72480 -12.60148 -12.58080 -12.45080 -11.79972 -11.76795 -11.53851 -11.41683 -11.31433 -11.20141 -10.71985 -10.56005 -10.49269 -9.19101 -8.20818 -6.32225 -0.80585 -0.55723 0.08045 0.57857 1.06311 1.40983 1.43483 1.51360 1.78093 1.86075 2.30996 2.40992 2.57968 3.13106 3.44852 3.72500 3.98798 4.05428 4.08981 4.14977 4.44096 4.49050 4.75565 4.88616 4.89841 5.05773 5.12205 5.42556 5.51572 5.68061 5.82375 6.10953 6.20555 6.84903 7.13847 7.37348 7.50861 8.90897 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.072011 B = 0.002458 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.734532 B =11386.364577 C =11749.348506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.104 4.104 11 C 0.140 3.860 12 N -0.658 5.658 13 C 0.267 3.733 14 N -0.376 5.376 15 N -0.203 5.203 16 C 0.014 3.986 17 C 0.064 3.936 18 C -0.213 4.213 19 C -0.020 4.020 20 O 0.119 5.881 21 N -0.373 5.373 22 S 0.172 5.828 23 H 0.263 0.737 24 H -0.005 1.005 25 H -0.005 1.005 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.431 0.569 31 H 0.190 0.810 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -27.543 -0.006 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.142 4.142 11 C 0.015 3.985 12 N -0.297 5.297 13 C -0.105 4.105 14 N -0.228 5.228 15 N -0.044 5.044 16 C -0.268 4.268 17 C -0.095 4.095 18 C -0.238 4.238 19 C -0.101 4.101 20 O 0.047 5.953 21 N -0.074 5.074 22 S 0.412 5.588 23 H 0.072 0.928 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.272 0.728 31 H 0.207 0.793 32 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 6.219 -26.905 -0.009 27.614 hybrid contribution -0.684 1.525 -0.001 1.671 sum 5.535 -25.380 -0.010 25.976 Atomic orbital electron populations 1.70094 1.07871 1.27884 1.51525 1.26000 0.95744 1.03486 0.94801 0.85493 0.78215 0.78067 0.79227 1.19090 1.21181 1.19081 1.21640 0.93732 0.92028 1.50651 0.91589 1.18916 0.94362 0.92631 0.95340 1.21624 0.98636 0.91532 1.02370 1.21488 0.91306 0.83990 1.01706 1.44125 1.10503 0.98818 1.76223 1.26131 0.93218 0.94001 0.97177 1.71446 1.15005 1.07543 1.28790 1.71480 1.26804 0.95417 1.10657 1.25995 0.90745 0.96172 1.13907 1.20571 0.91962 0.89869 1.07051 1.23065 1.00815 0.91702 1.08202 1.26897 0.81812 1.01824 0.99542 1.84777 1.24636 1.20357 1.65571 1.74298 1.23126 0.90346 1.19678 1.84569 1.07586 0.94739 1.71951 0.92782 0.98694 0.98684 0.91183 0.91190 0.92191 0.92195 0.72813 0.79259 0.70604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 43.43 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 11 C 0.14 4.64 5.98 86.38 0.52 5.16 16 12 N -0.66 -17.64 5.71 -350.51 -2.00 -19.64 16 13 C 0.27 7.73 8.21 179.23 1.47 9.20 16 14 N -0.38 -12.93 11.20 -59.35 -0.66 -13.60 16 15 N -0.20 -6.54 11.70 -49.49 -0.58 -7.12 16 16 C 0.01 0.39 7.64 87.45 0.67 1.06 16 17 C 0.06 1.46 7.27 42.83 0.31 1.77 16 18 C -0.21 -3.23 11.15 22.62 0.25 -2.98 16 19 C -0.02 -0.16 12.27 67.11 0.82 0.67 16 20 O 0.12 1.76 11.18 71.16 0.80 2.56 16 21 N -0.37 -8.05 12.13 -49.46 -0.60 -8.65 16 22 S 0.17 4.09 23.30 -56.49 -1.32 2.77 16 23 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 24 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 25 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 27 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.43 8.89 8.60 -92.71 -0.80 8.09 16 31 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.28 -1.26 8.06 -2.91 -0.02 -1.28 16 Total: -1.00 -72.60 306.28 3.36 -69.24 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 0.37 Total: 1.72 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 5.05 Total: -16.54 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.56 Total: -105.20 kcal Atomic # 8 Polarization: 1.76 SS G_CDS: 0.80 Total: 2.56 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.32 Total: 2.77 kcal Total: -72.60 3.36 -69.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287851542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.468 kcal (2) G-P(sol) polarization free energy of solvation -72.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds