Wall clock time and date at job start Tue Mar 31 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99771 * 2 1 4 4 N 1.46494 * 109.47022 * 126.06229 * 3 2 1 5 5 C 1.46496 * 120.00472 * 277.00799 * 4 3 2 6 6 C 1.50709 * 109.47201 * 270.00095 * 5 4 3 7 7 H 1.07997 * 119.99619 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99811 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00148 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99630 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47227 * 90.00182 * 10 8 6 12 12 H 1.48498 * 109.46990 * 210.00124 * 10 8 6 13 13 H 1.48501 * 109.47277 * 330.00049 * 10 8 6 14 14 C 1.34785 * 119.99810 * 97.01002 * 4 3 2 15 15 O 1.21511 * 119.99895 * 185.41052 * 14 4 3 16 16 C 1.48150 * 119.99838 * 5.41398 * 14 4 3 17 17 C 1.39871 * 120.91468 * 312.61364 * 16 14 4 18 18 C 1.38079 * 119.03395 * 180.02562 * 17 16 14 19 19 N 1.31848 * 120.92095 * 0.02562 * 18 17 16 20 20 C 1.31889 * 122.02731 * 359.68515 * 19 18 17 21 21 Cl 1.73601 * 119.57247 * 180.31469 * 20 19 18 22 22 C 1.38347 * 120.85939 * 0.58255 * 20 19 18 23 23 H 1.08001 * 120.00384 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99537 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00097 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46730 * 6.06297 * 3 2 1 27 27 H 1.09004 * 109.47032 * 246.06665 * 3 2 1 28 28 H 1.08995 * 109.47239 * 29.99852 * 5 4 3 29 29 H 1.09001 * 109.47540 * 150.00612 * 5 4 3 30 30 H 0.97009 * 119.99825 * 179.97438 * 9 8 6 31 31 H 1.08006 * 120.48285 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.54138 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.50772 * 179.73114 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0117 1.3215 1.1165 5 6 2.5577 1.6970 2.4578 6 6 2.7058 3.1858 2.6398 7 1 3.0991 3.7914 1.8368 8 6 2.3391 3.7744 3.8314 9 7 1.8606 3.0367 4.8093 10 14 2.5219 5.6197 4.0567 11 1 1.2734 6.2973 3.6241 12 1 2.7780 5.9206 5.4881 13 1 3.6598 6.1081 3.2370 14 6 4.3020 0.9911 0.9097 15 8 5.0664 0.9090 1.8507 16 6 4.7881 0.7281 -0.4648 17 6 4.0756 -0.1071 -1.3315 18 6 4.5645 -0.3257 -2.6042 19 7 5.6860 0.2396 -3.0056 20 6 6.3859 1.0379 -2.2231 21 17 7.8499 1.7550 -2.8201 22 6 5.9715 1.3070 -0.9309 23 1 -0.5401 0.9353 -0.0004 24 1 -0.5399 -0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3600 2.1307 0.1085 27 1 2.6062 1.4113 -0.9393 28 1 1.5108 1.4187 2.5782 29 1 3.1598 1.1783 3.2037 30 1 1.6029 3.4509 5.6479 31 1 3.1564 -0.5741 -1.0100 32 1 4.0208 -0.9688 -3.2803 33 1 6.5513 1.9582 -0.2936 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292317499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:53 Heat of formation + Delta-G solvation = 5.951100 kcal Electronic energy + Delta-G solvation = -19178.081209 eV Core-core repulsion = 16037.026512 eV Total energy + Delta-G solvation = -3141.054696 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90281 -40.22028 -37.76631 -37.46409 -35.24674 -33.92413 -33.70002 -32.23969 -29.70425 -27.22533 -26.23806 -24.70086 -24.21626 -21.54469 -20.54439 -18.82694 -18.63246 -18.11140 -17.42716 -16.97555 -16.82452 -16.19532 -16.07266 -15.50952 -15.42829 -15.08345 -14.47295 -14.41176 -14.10567 -13.36857 -13.11492 -13.06038 -12.97551 -12.75740 -12.58909 -12.43111 -12.27317 -12.20896 -11.72401 -11.39828 -11.12037 -10.66020 -10.61922 -10.37334 -10.07569 -9.62250 -8.25598 -6.40207 -0.42296 -0.22644 0.62300 1.29334 1.36215 1.38816 1.48429 1.61261 2.15725 2.37971 2.50547 3.05051 3.24860 3.43737 3.68521 3.72263 3.97228 4.05022 4.15536 4.34623 4.44716 4.51052 4.80769 4.87273 4.97682 5.06393 5.18386 5.27838 5.42809 5.69563 5.71374 5.90385 6.00695 6.50134 6.50834 6.67941 7.09479 7.31905 8.81919 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.005359 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.344616 B = 5223.629456 C = 6402.485752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.194 4.194 3 C 0.123 3.877 4 N -0.582 5.582 5 C 0.263 3.737 6 C -0.548 4.548 7 H 0.053 0.947 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.274 1.274 14 C 0.543 3.457 15 O -0.580 6.580 16 C -0.070 4.070 17 C -0.138 4.138 18 C 0.132 3.868 19 N -0.479 5.479 20 C 0.169 3.831 21 Cl -0.021 7.021 22 C -0.122 4.122 23 H 0.099 0.901 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.031 0.969 29 H 0.003 0.997 30 H 0.268 0.732 31 H 0.177 0.823 32 H 0.220 0.780 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 -6.557 -17.440 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.213 4.213 3 C 0.002 3.998 4 N -0.310 5.310 5 C 0.143 3.857 6 C -0.587 4.587 7 H 0.072 0.928 8 C -0.186 4.186 9 N -0.563 5.563 10 Si 0.789 3.211 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.199 1.199 14 C 0.330 3.670 15 O -0.461 6.461 16 C -0.081 4.081 17 C -0.158 4.158 18 C -0.025 4.025 19 N -0.191 5.191 20 C 0.006 3.994 21 Cl 0.008 6.992 22 C -0.144 4.144 23 H 0.117 0.883 24 H 0.141 0.859 25 H 0.142 0.858 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.077 0.923 31 H 0.194 0.806 32 H 0.236 0.764 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.082 -6.657 -17.634 18.880 hybrid contribution 0.110 1.265 1.663 2.092 sum 1.192 -5.392 -15.971 16.899 Atomic orbital electron populations 1.24111 0.95374 1.03207 0.96520 1.23265 0.96849 0.97708 1.03476 1.21066 0.92264 0.97263 0.89228 1.48132 1.07702 1.63714 1.11469 1.18811 0.94269 0.94325 0.78313 1.21674 1.43402 0.93481 1.00129 0.92842 1.25787 0.94401 1.03313 0.95146 1.70038 1.43531 1.37572 1.05185 0.85458 0.78907 0.79296 0.77440 1.18760 1.20608 1.19859 1.18671 0.82539 0.77472 0.88300 1.90751 1.56333 1.54043 1.44964 1.20292 0.95461 0.98652 0.93701 1.23126 1.01451 0.96967 0.94275 1.23400 0.89654 0.95363 0.94043 1.67004 1.07657 1.07585 1.36836 1.21440 0.91704 0.96459 0.89842 1.98405 1.31551 1.80539 1.88751 1.21828 0.96110 1.01093 0.95323 0.88309 0.85946 0.85776 0.90204 0.87912 0.95077 0.97911 0.92290 0.80578 0.76396 0.84119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 14.32 67.78 0.97 -2.17 16 2 C -0.19 -4.50 8.52 25.64 0.22 -4.29 16 3 C 0.12 3.65 5.35 85.63 0.46 4.10 16 4 N -0.58 -23.98 2.44 -833.58 -2.04 -26.01 16 5 C 0.26 13.80 5.21 85.64 0.45 14.25 16 6 C -0.55 -30.90 9.39 25.60 0.24 -30.66 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 8 C 0.01 0.75 5.46 84.66 0.46 1.21 16 9 N -0.92 -54.64 13.29 21.45 0.28 -54.36 16 10 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 14 C 0.54 22.75 7.31 86.88 0.63 23.39 16 15 O -0.58 -30.26 16.58 -3.75 -0.06 -30.32 16 16 C -0.07 -2.17 5.02 -19.89 -0.10 -2.27 16 17 C -0.14 -2.97 7.58 22.63 0.17 -2.80 16 18 C 0.13 2.32 11.17 84.65 0.95 3.27 16 19 N -0.48 -11.24 10.31 -186.86 -1.93 -13.16 16 20 C 0.17 4.46 7.27 84.71 0.62 5.07 16 21 Cl -0.02 -0.50 29.10 -2.72 -0.08 -0.58 16 22 C -0.12 -3.68 9.60 22.66 0.22 -3.46 16 23 H 0.10 2.06 7.84 -2.91 -0.02 2.03 16 24 H 0.12 1.91 8.06 -2.91 -0.02 1.88 16 25 H 0.12 2.49 6.56 -2.91 -0.02 2.47 16 26 H 0.08 2.50 7.78 -2.39 -0.02 2.48 16 27 H 0.10 2.52 5.25 -2.39 -0.01 2.51 16 28 H 0.03 1.64 8.07 -2.39 -0.02 1.63 16 29 H 0.00 0.17 7.35 -2.39 -0.02 0.15 16 30 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 31 H 0.18 3.07 4.12 -2.91 -0.01 3.06 16 32 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -72.05 306.06 4.62 -67.42 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.14 Total: 5.26 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.28 Total: 5.65 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -3.68 Total: -93.53 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.06 Total: -30.32 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -72.05 4.62 -67.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292317499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.376 kcal (2) G-P(sol) polarization free energy of solvation -72.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds