Wall clock time and date at job start Tue Mar 31 2020 02:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99761 * 2 1 4 4 N 1.46495 * 109.47011 * 124.99942 * 3 2 1 5 5 C 1.46496 * 119.99972 * 262.73943 * 4 3 2 6 6 C 1.50700 * 109.47399 * 270.00036 * 5 4 3 7 7 H 1.07997 * 119.99942 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00160 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99697 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00080 * 0.02562 * 8 6 5 11 11 H 1.48507 * 109.47169 * 89.99450 * 10 8 6 12 12 H 1.48496 * 109.47256 * 209.99336 * 10 8 6 13 13 H 1.48501 * 109.47009 * 329.99847 * 10 8 6 14 14 C 1.34771 * 120.00251 * 82.74446 * 4 3 2 15 15 O 1.21514 * 120.00133 * 183.00051 * 14 4 3 16 16 C 1.48172 * 120.00172 * 2.99720 * 14 4 3 17 17 C 1.39260 * 119.71955 * 173.16743 * 16 14 4 18 18 C 1.38747 * 119.03822 * 179.74650 * 17 16 14 19 19 Cl 1.73603 * 120.76632 * 180.23118 * 18 17 16 20 20 C 1.38767 * 118.46511 * 0.25247 * 18 17 16 21 21 C 1.38502 * 119.33228 * 0.02562 * 20 18 17 22 22 N 1.31542 * 120.92233 * 359.97438 * 21 20 18 23 23 H 1.08007 * 119.99998 * 0.02562 * 1 2 3 24 24 H 1.08002 * 119.99951 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00334 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47339 * 4.99234 * 3 2 1 27 27 H 1.09001 * 109.46630 * 244.99838 * 3 2 1 28 28 H 1.09003 * 109.47014 * 30.00265 * 5 4 3 29 29 H 1.08995 * 109.47302 * 150.00367 * 5 4 3 30 30 H 0.97008 * 120.00135 * 180.02562 * 9 8 6 31 31 H 1.07992 * 120.47748 * 0.02805 * 17 16 14 32 32 H 1.07990 * 120.33449 * 179.97438 * 20 18 17 33 33 H 1.08005 * 119.53511 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6150 2.0070 2.3752 6 6 3.0435 3.4505 2.3139 7 1 3.5471 3.8275 1.4361 8 6 2.7916 4.2902 3.3781 9 7 3.1660 5.5498 3.3247 10 14 1.9198 3.6385 4.8962 11 1 2.9244 3.1233 5.8610 12 1 1.1421 4.7338 5.5290 13 1 1.0001 2.5400 4.5054 14 6 4.1979 0.7357 1.0281 15 8 4.9475 0.7105 1.9841 16 6 4.6078 0.1107 -0.2513 17 6 5.9040 -0.3769 -0.3974 18 6 6.2712 -0.9642 -1.5996 19 17 7.8734 -1.5923 -1.8284 20 6 5.3282 -1.0376 -2.6151 21 6 4.0591 -0.5261 -2.4007 22 7 3.7380 0.0256 -1.2505 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8501 -0.9353 0.0004 26 1 1.3586 2.1317 0.0894 27 1 2.6213 1.4026 -0.9314 28 1 1.5337 1.9541 2.5026 29 1 3.1045 1.5183 3.2175 30 1 2.9892 6.1406 4.0736 31 1 6.6118 -0.3031 0.4149 32 1 5.5817 -1.4881 -3.5632 33 1 3.3228 -0.5811 -3.1889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292462700.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:39 Heat of formation + Delta-G solvation = 40.947483 kcal Electronic energy + Delta-G solvation = -19263.354691 eV Core-core repulsion = 16123.817552 eV Total energy + Delta-G solvation = -3139.537139 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72851 -38.61355 -36.94661 -35.85027 -33.20021 -32.48340 -32.01052 -31.56138 -28.30841 -25.74580 -24.51790 -23.70663 -22.21685 -20.08077 -19.22299 -17.30691 -17.06198 -16.91249 -16.18308 -15.53786 -15.09813 -14.94803 -14.46878 -14.23463 -13.83155 -13.74392 -13.13088 -12.86907 -12.46652 -12.41611 -12.27868 -11.66132 -11.62643 -11.32905 -11.09365 -10.89446 -10.52126 -10.18514 -9.89581 -9.71045 -9.50682 -9.38796 -9.23570 -8.84295 -8.59091 -7.76297 -6.09270 -4.08658 0.51681 0.84457 1.66547 2.55731 2.97807 3.30128 3.36050 3.38138 3.60151 3.91684 4.18912 4.39651 4.57017 4.60112 4.79602 5.10881 5.24756 5.35149 5.37722 5.51949 5.54183 5.70085 5.94066 6.14170 6.21690 6.52697 6.70089 6.90146 6.93154 6.99994 7.33738 7.57046 7.59445 8.14302 8.43631 8.77392 8.94229 9.50349 11.03904 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.005047 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.066890 B = 5546.494595 C = 6427.665103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C 0.128 3.872 4 N -0.562 5.562 5 C 0.214 3.786 6 C -0.531 4.531 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.557 3.443 15 O -0.531 6.531 16 C 0.110 3.890 17 C -0.109 4.109 18 C 0.001 3.999 19 Cl -0.051 7.051 20 C -0.153 4.153 21 C 0.105 3.895 22 N -0.442 5.442 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.265 0.735 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -14.999 -13.704 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.153 4.153 3 C 0.005 3.995 4 N -0.290 5.290 5 C 0.094 3.906 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.342 3.658 15 O -0.407 6.407 16 C -0.028 4.028 17 C -0.130 4.130 18 C -0.034 4.034 19 Cl -0.022 7.022 20 C -0.174 4.174 21 C -0.054 4.054 22 N -0.155 5.155 23 H 0.115 0.885 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.097 0.903 27 H 0.133 0.867 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.667 -14.511 -12.919 19.440 hybrid contribution 0.568 -0.608 0.534 0.989 sum 1.235 -15.119 -12.384 19.583 Atomic orbital electron populations 1.23753 0.95877 1.01386 1.03190 1.23243 0.95529 0.99063 0.97439 1.21153 0.92718 0.94523 0.91100 1.47800 1.13939 1.51141 1.16132 1.19792 0.95800 0.93290 0.81749 1.21298 1.39144 0.92057 1.04397 0.90652 1.24831 0.95219 0.94670 0.98111 1.69894 1.46867 1.04728 1.31953 0.86866 0.80321 0.78903 0.83752 1.19839 1.21012 1.18933 1.17682 0.82679 0.79710 0.85777 1.90774 1.52151 1.59966 1.37841 1.21636 0.90153 0.96638 0.94401 1.22073 0.97544 0.96163 0.97229 1.21221 0.87859 0.98885 0.95448 1.98399 1.21709 1.85124 1.96972 1.22258 0.93950 1.01617 0.99572 1.23031 0.94337 0.92847 0.95145 1.68337 1.34366 1.12518 1.00245 0.88539 0.89159 0.88260 0.90278 0.86683 0.94739 0.94308 0.92512 0.82417 0.83551 0.81234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.67 14.32 29.01 0.42 -2.26 16 2 C -0.13 -1.96 8.70 -36.02 -0.31 -2.28 16 3 C 0.13 2.20 5.45 -5.19 -0.03 2.17 16 4 N -0.56 -11.98 2.46 -177.44 -0.44 -12.41 16 5 C 0.21 5.29 4.22 -5.20 -0.02 5.27 16 6 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 7 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 8 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 9 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 10 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 14 C 0.56 11.74 7.59 -12.18 -0.09 11.64 16 15 O -0.53 -12.93 15.90 5.35 0.09 -12.85 16 16 C 0.11 1.80 6.62 -83.01 -0.55 1.25 16 17 C -0.11 -1.56 9.45 -39.01 -0.37 -1.93 16 18 C 0.00 0.01 6.37 -39.20 -0.25 -0.24 16 19 Cl -0.05 -0.52 29.02 -51.86 -1.50 -2.03 16 20 C -0.15 -1.40 9.94 -39.29 -0.39 -1.79 16 21 C 0.11 1.03 11.18 -17.58 -0.20 0.83 16 22 N -0.44 -6.02 4.66 -9.81 -0.05 -6.07 16 23 H 0.10 1.24 7.84 -52.48 -0.41 0.83 16 24 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 25 H 0.10 1.45 7.54 -52.49 -0.40 1.06 16 26 H 0.08 1.40 7.67 -51.93 -0.40 1.00 16 27 H 0.12 1.85 5.25 -52.21 -0.27 1.58 16 28 H 0.03 0.82 7.13 -51.93 -0.37 0.45 16 29 H 0.04 1.01 6.81 -51.93 -0.35 0.66 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.16 2.34 7.66 -52.49 -0.40 1.94 16 32 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 303.90 15.07 4.58 4.58 Total: -1.00 -32.82 303.90 -6.92 -39.74 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.46 Total: -0.16 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.24 Total: -0.87 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.29 Total: -45.29 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.82 -6.92 -39.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292462700.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.683 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds