Wall clock time and date at job start Tue Mar 31 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99761 * 2 1 4 4 N 1.46495 * 109.47011 * 124.99942 * 3 2 1 5 5 C 1.46496 * 119.99972 * 262.73943 * 4 3 2 6 6 C 1.50700 * 109.47399 * 270.00036 * 5 4 3 7 7 H 1.07997 * 119.99942 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00160 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99697 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00080 * 0.02562 * 8 6 5 11 11 H 1.48507 * 109.47169 * 89.99450 * 10 8 6 12 12 H 1.48496 * 109.47256 * 209.99336 * 10 8 6 13 13 H 1.48501 * 109.47009 * 329.99847 * 10 8 6 14 14 C 1.34771 * 120.00251 * 82.74446 * 4 3 2 15 15 O 1.21514 * 120.00133 * 183.00051 * 14 4 3 16 16 C 1.48172 * 120.00172 * 2.99720 * 14 4 3 17 17 C 1.39260 * 119.71955 * 173.16743 * 16 14 4 18 18 C 1.38747 * 119.03822 * 179.74650 * 17 16 14 19 19 Cl 1.73603 * 120.76632 * 180.23118 * 18 17 16 20 20 C 1.38767 * 118.46511 * 0.25247 * 18 17 16 21 21 C 1.38502 * 119.33228 * 0.02562 * 20 18 17 22 22 N 1.31542 * 120.92233 * 359.97438 * 21 20 18 23 23 H 1.08007 * 119.99998 * 0.02562 * 1 2 3 24 24 H 1.08002 * 119.99951 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00334 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47339 * 4.99234 * 3 2 1 27 27 H 1.09001 * 109.46630 * 244.99838 * 3 2 1 28 28 H 1.09003 * 109.47014 * 30.00265 * 5 4 3 29 29 H 1.08995 * 109.47302 * 150.00367 * 5 4 3 30 30 H 0.97008 * 120.00135 * 180.02562 * 9 8 6 31 31 H 1.07992 * 120.47748 * 0.02805 * 17 16 14 32 32 H 1.07990 * 120.33449 * 179.97438 * 20 18 17 33 33 H 1.08005 * 119.53511 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6150 2.0070 2.3752 6 6 3.0435 3.4505 2.3139 7 1 3.5471 3.8275 1.4361 8 6 2.7916 4.2902 3.3781 9 7 3.1660 5.5498 3.3247 10 14 1.9198 3.6385 4.8962 11 1 2.9244 3.1233 5.8610 12 1 1.1421 4.7338 5.5290 13 1 1.0001 2.5400 4.5054 14 6 4.1979 0.7357 1.0281 15 8 4.9475 0.7105 1.9841 16 6 4.6078 0.1107 -0.2513 17 6 5.9040 -0.3769 -0.3974 18 6 6.2712 -0.9642 -1.5996 19 17 7.8734 -1.5923 -1.8284 20 6 5.3282 -1.0376 -2.6151 21 6 4.0591 -0.5261 -2.4007 22 7 3.7380 0.0256 -1.2505 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8501 -0.9353 0.0004 26 1 1.3586 2.1317 0.0894 27 1 2.6213 1.4026 -0.9314 28 1 1.5337 1.9541 2.5026 29 1 3.1045 1.5183 3.2175 30 1 2.9892 6.1406 4.0736 31 1 6.6118 -0.3031 0.4149 32 1 5.5817 -1.4881 -3.5632 33 1 3.3228 -0.5811 -3.1889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292462700.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:38 Heat of formation + Delta-G solvation = 20.195719 kcal Electronic energy + Delta-G solvation = -19264.254555 eV Core-core repulsion = 16123.817552 eV Total energy + Delta-G solvation = -3140.437003 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89034 -40.04338 -37.84254 -37.38199 -35.09552 -33.76812 -33.36651 -32.66048 -30.19490 -27.08323 -26.01873 -24.65202 -23.88996 -21.44103 -20.49253 -19.12264 -18.58441 -18.23562 -17.23080 -16.97694 -16.44078 -16.26445 -16.08251 -15.55897 -15.09465 -14.92594 -14.65064 -14.37113 -14.13230 -13.57722 -13.41147 -13.32179 -13.11002 -12.83414 -12.51517 -12.20556 -12.18849 -11.92712 -11.76116 -11.28269 -10.84433 -10.64269 -10.48716 -10.39145 -10.00201 -9.46138 -8.35403 -6.41381 -0.52602 -0.08475 0.77546 1.32345 1.36581 1.42147 1.46263 1.68620 2.20847 2.30398 2.70230 2.98456 3.06828 3.56785 3.69659 3.80204 4.12530 4.23016 4.33167 4.43230 4.59244 4.67409 4.74369 4.80251 4.87399 5.05980 5.15323 5.39990 5.44968 5.53524 5.82207 6.02189 6.19803 6.48146 6.59354 6.65509 7.11872 7.26448 8.81464 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.005047 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.066890 B = 5546.494595 C = 6427.665103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.128 3.872 4 N -0.572 5.572 5 C 0.224 3.776 6 C -0.539 4.539 7 H 0.028 0.972 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.946 3.054 11 H -0.274 1.274 12 H -0.272 1.272 13 H -0.239 1.239 14 C 0.547 3.453 15 O -0.582 6.582 16 C 0.084 3.916 17 C -0.119 4.119 18 C -0.004 4.004 19 Cl -0.039 7.039 20 C -0.123 4.123 21 C 0.114 3.886 22 N -0.452 5.452 23 H 0.098 0.902 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.051 0.949 29 H 0.023 0.977 30 H 0.270 0.730 31 H 0.139 0.861 32 H 0.191 0.809 33 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 -17.472 -15.739 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.166 4.166 3 C 0.007 3.993 4 N -0.300 5.300 5 C 0.102 3.898 6 C -0.577 4.577 7 H 0.047 0.953 8 C -0.183 4.183 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.200 1.200 12 H -0.197 1.197 13 H -0.163 1.163 14 C 0.335 3.665 15 O -0.463 6.463 16 C -0.053 4.053 17 C -0.141 4.141 18 C -0.039 4.039 19 Cl -0.010 7.010 20 C -0.143 4.143 21 C -0.046 4.046 22 N -0.164 5.164 23 H 0.116 0.884 24 H 0.134 0.866 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.157 0.843 32 H 0.208 0.792 33 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.941 -16.999 -14.993 22.686 hybrid contribution 1.134 0.138 0.947 1.483 sum 0.193 -16.861 -14.047 21.946 Atomic orbital electron populations 1.23977 0.95221 1.02672 1.00142 1.22974 0.95889 0.97576 1.00139 1.21334 0.92121 0.95817 0.90054 1.47889 1.15124 1.50838 1.16107 1.19435 0.96170 0.90805 0.83380 1.21483 1.38777 0.94435 1.03020 0.95318 1.25811 0.96015 0.94734 1.01746 1.70042 1.48479 1.06336 1.33395 0.85734 0.79407 0.79189 0.78789 1.19966 1.19706 1.16252 1.18430 0.81841 0.79056 0.87199 1.90714 1.53383 1.62009 1.40148 1.20814 0.91452 0.99468 0.93522 1.21936 0.96659 0.97187 0.98320 1.21300 0.89005 0.98635 0.94911 1.98407 1.20959 1.84800 1.96785 1.22776 0.92629 0.98814 1.00078 1.23822 0.95606 0.90806 0.94331 1.68159 1.34050 1.13311 1.00915 0.88356 0.86646 0.88016 0.91500 0.85707 0.93106 0.95920 0.92127 0.84264 0.79197 0.76624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.24 14.32 67.78 0.97 -3.27 16 2 C -0.15 -4.06 8.70 25.65 0.22 -3.84 16 3 C 0.13 4.41 5.45 85.63 0.47 4.88 16 4 N -0.57 -25.27 2.46 -833.58 -2.05 -27.32 16 5 C 0.22 11.40 4.22 85.63 0.36 11.76 16 6 C -0.54 -32.50 9.94 25.60 0.25 -32.24 16 7 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 8 C 0.02 0.92 5.47 84.66 0.46 1.38 16 9 N -0.94 -60.13 13.96 21.45 0.30 -59.83 16 10 Si 0.95 44.98 27.47 68.60 1.88 46.87 16 11 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 14 C 0.55 24.31 7.59 86.88 0.66 24.97 16 15 O -0.58 -30.42 15.90 -3.76 -0.06 -30.48 16 16 C 0.08 2.79 6.62 41.89 0.28 3.06 16 17 C -0.12 -3.48 9.45 22.64 0.21 -3.27 16 18 C 0.00 -0.08 6.37 22.52 0.14 0.06 16 19 Cl -0.04 -0.72 29.02 -2.72 -0.08 -0.80 16 20 C -0.12 -1.72 9.94 22.46 0.22 -1.49 16 21 C 0.11 1.76 11.18 84.80 0.95 2.71 16 22 N -0.45 -11.58 4.66 -184.96 -0.86 -12.45 16 23 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 24 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 25 H 0.10 2.79 7.54 -2.91 -0.02 2.77 16 26 H 0.07 2.40 7.67 -2.39 -0.02 2.38 16 27 H 0.13 3.99 5.25 -2.95 -0.02 3.98 16 28 H 0.05 2.40 7.13 -2.39 -0.02 2.38 16 29 H 0.02 1.23 6.81 -2.39 -0.02 1.21 16 30 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 31 H 0.14 4.47 7.66 -2.91 -0.02 4.45 16 32 H 0.19 1.09 8.06 -2.92 -0.02 1.07 16 33 H 0.22 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -77.31 303.90 5.40 -71.91 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.07 Total: 7.38 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 5.20 Total: 4.71 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -2.62 Total: -99.60 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.06 Total: -30.48 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.87 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -77.31 5.40 -71.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292462700.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.102 kcal (2) G-P(sol) polarization free energy of solvation -77.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds