Wall clock time and date at job start Tue Mar 31 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50700 * 120.00079 * 2 1 4 4 N 1.46506 * 109.47189 * 124.99987 * 3 2 1 5 5 C 1.46497 * 120.00055 * 262.77014 * 4 3 2 6 6 C 1.50703 * 109.47041 * 269.99978 * 5 4 3 7 7 H 1.08001 * 119.99811 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00140 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00151 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99906 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47064 * 89.99709 * 10 8 6 12 12 H 1.48499 * 109.47022 * 209.99867 * 10 8 6 13 13 H 1.48500 * 109.46932 * 329.99838 * 10 8 6 14 14 C 1.34772 * 119.99957 * 82.76371 * 4 3 2 15 15 O 1.21522 * 120.00157 * 183.03553 * 14 4 3 16 16 C 1.48114 * 120.00245 * 3.04551 * 14 4 3 17 17 C 1.39348 * 119.70809 * 173.16864 * 16 14 4 18 18 C 1.38521 * 119.07507 * 179.97438 * 17 16 14 19 19 C 1.38775 * 118.47935 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 120.33923 * 179.97438 * 19 18 17 21 21 C 1.38721 * 119.32259 * 359.97438 * 19 18 17 22 22 N 1.31482 * 120.88112 * 0.02562 * 21 19 18 23 23 H 1.07999 * 120.00498 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.99861 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00302 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47317 * 4.99934 * 3 2 1 27 27 H 1.08996 * 109.47611 * 244.99792 * 3 2 1 28 28 H 1.08998 * 109.47098 * 29.99358 * 5 4 3 29 29 H 1.08997 * 109.47778 * 149.99863 * 5 4 3 30 30 H 0.96994 * 120.00165 * 180.02562 * 9 8 6 31 31 H 1.07998 * 120.45950 * 0.24928 * 17 16 14 32 32 H 1.07997 * 120.76084 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.56032 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6148 2.0064 2.3755 6 6 3.0429 3.4501 2.3146 7 1 3.5471 3.8273 1.4371 8 6 2.7907 4.2894 3.3791 9 7 3.1647 5.5491 3.3261 10 14 1.9180 3.6372 4.8964 11 1 2.9218 3.1213 5.8614 12 1 1.1402 4.7326 5.5292 13 1 0.9980 2.5393 4.5047 14 6 4.1981 0.7359 1.0279 15 8 4.9475 0.7101 1.9841 16 6 4.6083 0.1124 -0.2515 17 6 5.9055 -0.3751 -0.3974 18 6 6.2750 -0.9562 -1.5993 19 6 5.3333 -1.0295 -2.6160 20 17 5.7447 -1.7472 -4.1422 21 6 4.0599 -0.5233 -2.4003 22 7 3.7370 0.0230 -1.2488 23 1 -0.5401 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9313 28 1 1.5336 1.9532 2.5029 29 1 3.1045 1.5176 3.2177 30 1 2.9877 6.1395 4.0751 31 1 6.6116 -0.3049 0.4168 32 1 7.2731 -1.3433 -1.7419 33 1 3.3241 -0.5780 -3.1891 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292497416.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:41 Heat of formation + Delta-G solvation = 20.149626 kcal Electronic energy + Delta-G solvation = -19242.302892 eV Core-core repulsion = 16101.863890 eV Total energy + Delta-G solvation = -3140.439002 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.90786 -40.05457 -37.70809 -37.40611 -35.09783 -33.79815 -33.64370 -32.45756 -30.14259 -27.08304 -25.92791 -24.84577 -23.84002 -21.44660 -20.49349 -19.11823 -18.53240 -18.28458 -17.59258 -16.94398 -16.44991 -16.19683 -15.98527 -15.56864 -15.12145 -14.86534 -14.43269 -14.37562 -14.15398 -13.63030 -13.47030 -13.15848 -13.08518 -12.83200 -12.50925 -12.28708 -12.18508 -11.93466 -11.75867 -11.28123 -11.02473 -10.84108 -10.48970 -10.14111 -10.01589 -9.45799 -8.35082 -6.41120 -0.62779 0.03411 0.87166 1.32692 1.36809 1.40670 1.46413 1.64642 2.20383 2.30701 2.67528 2.98621 3.04388 3.57096 3.63119 3.78137 3.89895 4.16858 4.30990 4.57877 4.62791 4.68345 4.72988 4.79218 4.92086 5.03193 5.12589 5.35018 5.43209 5.51015 5.80100 6.00168 6.19570 6.44050 6.59596 6.60548 7.12000 7.26727 8.81787 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.025878 B = 0.004606 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.744283 B = 6077.636274 C = 6646.174579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.129 3.871 4 N -0.574 5.574 5 C 0.224 3.776 6 C -0.539 4.539 7 H 0.029 0.971 8 C 0.016 3.984 9 N -0.943 5.943 10 Si 0.946 3.054 11 H -0.273 1.273 12 H -0.273 1.273 13 H -0.240 1.240 14 C 0.548 3.452 15 O -0.579 6.579 16 C 0.069 3.931 17 C -0.104 4.104 18 C -0.060 4.060 19 C -0.067 4.067 20 Cl -0.033 7.033 21 C 0.109 3.891 22 N -0.440 5.440 23 H 0.115 0.885 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.123 0.877 28 H 0.050 0.950 29 H 0.024 0.976 30 H 0.270 0.730 31 H 0.153 0.847 32 H 0.183 0.817 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -17.405 -15.004 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.167 4.167 3 C 0.008 3.992 4 N -0.301 5.301 5 C 0.102 3.898 6 C -0.577 4.577 7 H 0.047 0.953 8 C -0.183 4.183 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.198 1.198 12 H -0.198 1.198 13 H -0.163 1.163 14 C 0.335 3.665 15 O -0.459 6.459 16 C -0.067 4.067 17 C -0.126 4.126 18 C -0.086 4.086 19 C -0.096 4.096 20 Cl -0.004 7.004 21 C -0.052 4.052 22 N -0.152 5.152 23 H 0.134 0.866 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.140 0.860 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.170 0.830 32 H 0.200 0.800 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.333 -16.945 -14.375 22.223 hybrid contribution 0.810 0.132 0.635 1.038 sum 0.477 -16.812 -13.740 21.717 Atomic orbital electron populations 1.23978 0.95220 1.02705 1.00086 1.22983 0.95944 0.97606 1.00196 1.21292 0.92157 0.95795 0.89984 1.47909 1.15219 1.50961 1.16023 1.19430 0.96133 0.90821 0.83379 1.21488 1.38786 0.94449 1.03021 0.95303 1.25808 0.95999 0.94729 1.01745 1.70035 1.48488 1.06341 1.33387 0.85734 0.79421 0.79157 0.78814 1.19830 1.19783 1.16330 1.18428 0.81774 0.79007 0.87253 1.90713 1.53291 1.61940 1.39997 1.21098 0.92774 0.99674 0.93145 1.22179 0.95671 0.95551 0.99164 1.21818 1.01211 0.95594 0.89930 1.22434 0.96413 1.00804 0.89978 1.98406 1.93490 1.81184 1.27292 1.23488 0.94418 0.92310 0.94968 1.68288 1.33783 1.12962 1.00177 0.86640 0.88301 0.88051 0.91453 0.86014 0.93249 0.95772 0.92121 0.82969 0.79987 0.78362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.36 14.32 67.79 0.97 -3.39 16 2 C -0.15 -4.21 8.70 25.65 0.22 -3.99 16 3 C 0.13 4.51 5.45 85.63 0.47 4.98 16 4 N -0.57 -25.21 2.46 -833.62 -2.05 -27.26 16 5 C 0.22 11.34 4.22 85.63 0.36 11.70 16 6 C -0.54 -32.34 9.94 25.60 0.25 -32.09 16 7 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 8 C 0.02 0.93 5.47 84.66 0.46 1.39 16 9 N -0.94 -59.88 13.96 21.45 0.30 -59.58 16 10 Si 0.95 44.73 27.47 68.60 1.88 46.62 16 11 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 14 C 0.55 23.83 7.58 86.87 0.66 24.49 16 15 O -0.58 -29.34 15.90 -3.79 -0.06 -29.40 16 16 C 0.07 2.25 6.62 41.90 0.28 2.53 16 17 C -0.10 -2.73 9.63 22.60 0.22 -2.52 16 18 C -0.06 -1.08 9.97 22.47 0.22 -0.85 16 19 C -0.07 -1.15 6.35 22.51 0.14 -1.01 16 20 Cl -0.03 -0.45 28.99 -2.72 -0.08 -0.53 16 21 C 0.11 2.08 10.98 84.86 0.93 3.01 16 22 N -0.44 -11.81 4.65 -184.82 -0.86 -12.67 16 23 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 24 H 0.10 2.33 7.84 -2.91 -0.02 2.31 16 25 H 0.10 2.86 7.53 -2.91 -0.02 2.84 16 26 H 0.07 2.45 7.67 -2.39 -0.02 2.43 16 27 H 0.12 4.01 5.26 -2.88 -0.02 3.99 16 28 H 0.05 2.33 7.13 -2.39 -0.02 2.31 16 29 H 0.02 1.29 6.81 -2.39 -0.02 1.27 16 30 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.15 4.07 7.66 -2.91 -0.02 4.05 16 32 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 33 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -74.41 303.85 5.39 -69.02 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.07 Total: 9.54 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.19 Total: 4.26 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -2.61 Total: -99.51 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.06 Total: -29.40 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.62 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -74.41 5.39 -69.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292497416.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.173 kcal (2) G-P(sol) polarization free energy of solvation -74.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds