Wall clock time and date at job start Tue Mar 31 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 120.00146 * 2 1 4 4 N 1.46501 * 109.46800 * 125.00054 * 3 2 1 5 5 C 1.46499 * 120.00212 * 278.67357 * 4 3 2 6 6 C 1.50703 * 109.47143 * 269.99978 * 5 4 3 7 7 H 1.07997 * 119.99817 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00048 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00140 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99953 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47268 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47237 * 120.00099 * 10 8 6 13 13 H 1.48504 * 109.47409 * 240.00201 * 10 8 6 14 14 C 1.34783 * 119.99841 * 98.67244 * 4 3 2 15 15 O 1.21559 * 119.99833 * 187.09408 * 14 4 3 16 16 C 1.47758 * 119.99829 * 7.09842 * 14 4 3 17 17 C 1.40019 * 120.56912 * 329.10991 * 16 14 4 18 18 C 1.38352 * 118.30657 * 180.24048 * 17 16 14 19 19 C 1.38356 * 119.33693 * 359.48529 * 18 17 16 20 20 N 1.31913 * 121.10406 * 0.25586 * 19 18 17 21 21 C 1.31825 * 121.86832 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 119.74266 * 179.97438 * 21 20 19 23 23 H 1.07998 * 120.00321 * 180.02562 * 1 2 3 24 24 H 1.08006 * 119.99548 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.99890 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47275 * 5.00437 * 3 2 1 27 27 H 1.08992 * 109.47310 * 245.00101 * 3 2 1 28 28 H 1.08996 * 109.47477 * 29.99903 * 5 4 3 29 29 H 1.09001 * 109.47173 * 150.00126 * 5 4 3 30 30 H 0.96998 * 119.99834 * 179.97438 * 9 8 6 31 31 H 1.08002 * 120.84706 * 0.02562 * 17 16 14 32 32 H 1.07993 * 120.33133 * 179.76130 * 18 17 16 33 33 H 1.07997 * 119.44314 * 180.23263 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5108 1.6843 2.4688 6 6 2.6228 3.1741 2.6668 7 1 3.0142 3.7960 1.8755 8 6 2.2245 3.7431 3.8579 9 7 1.7473 2.9857 4.8214 10 14 2.3627 5.5897 4.1031 11 1 2.9266 6.2109 2.8778 12 1 1.0161 6.1557 4.3708 13 1 3.2558 5.8707 5.2558 14 6 4.2942 1.0319 0.9420 15 8 5.0392 0.9276 1.8968 16 6 4.8140 0.8301 -0.4263 17 6 3.9886 0.3139 -1.4327 18 6 4.5252 0.1394 -2.6960 19 6 5.8444 0.4870 -2.9261 20 7 6.5985 0.9765 -1.9608 21 6 6.1356 1.1574 -0.7398 22 17 7.1769 1.8050 0.4890 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3587 2.1317 0.0896 27 1 2.6213 1.4026 -0.9313 28 1 1.4686 1.3817 2.5702 29 1 3.1126 1.1718 3.2193 30 1 1.4675 3.3860 5.6595 31 1 2.9604 0.0553 -1.2273 32 1 3.9190 -0.2600 -3.4955 33 1 6.2639 0.3550 -3.9125 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293741925.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:48 Heat of formation + Delta-G solvation = 28.569131 kcal Electronic energy + Delta-G solvation = -19505.433432 eV Core-core repulsion = 16365.359527 eV Total energy + Delta-G solvation = -3140.073905 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91791 -40.05220 -37.82344 -37.34407 -35.30670 -33.83815 -33.70864 -32.24742 -29.57507 -27.38489 -25.99202 -24.68982 -24.08129 -21.51172 -20.45400 -18.65579 -18.54529 -18.30013 -17.94593 -17.00074 -16.39790 -16.05471 -15.96602 -15.60521 -15.32686 -14.70631 -14.54224 -14.23135 -13.88227 -13.41897 -13.27232 -12.97779 -12.88845 -12.65520 -12.48307 -12.32115 -12.26398 -12.17213 -11.69612 -11.15836 -11.03903 -10.66033 -10.42885 -10.28513 -10.08575 -9.51155 -8.24406 -6.38648 -0.47608 -0.04647 0.78709 1.25915 1.34284 1.37274 1.48449 1.78184 2.22964 2.38959 2.62781 3.05685 3.31306 3.55786 3.66679 3.84793 3.99851 4.11586 4.19655 4.30288 4.38848 4.77048 4.81388 4.95108 5.00065 5.04763 5.22054 5.41702 5.47916 5.67975 5.73417 5.90690 6.03752 6.53399 6.62151 6.70710 7.20518 7.36108 8.83026 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.006664 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.233639 B = 4200.580847 C = 5400.707631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.200 4.200 3 C 0.104 3.896 4 N -0.587 5.587 5 C 0.266 3.734 6 C -0.544 4.544 7 H 0.051 0.949 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.266 1.266 13 H -0.282 1.282 14 C 0.540 3.460 15 O -0.565 6.565 16 C -0.180 4.180 17 C -0.062 4.062 18 C -0.150 4.150 19 C 0.134 3.866 20 N -0.503 5.503 21 C 0.194 3.806 22 Cl -0.032 7.032 23 H 0.123 0.877 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.028 0.972 29 H 0.001 0.999 30 H 0.268 0.732 31 H 0.190 0.810 32 H 0.203 0.797 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 -6.991 -20.121 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.218 4.218 3 C -0.018 4.018 4 N -0.317 5.317 5 C 0.146 3.854 6 C -0.582 4.582 7 H 0.069 0.931 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.787 3.213 11 H -0.193 1.193 12 H -0.191 1.191 13 H -0.208 1.208 14 C 0.328 3.672 15 O -0.445 6.445 16 C -0.187 4.187 17 C -0.087 4.087 18 C -0.169 4.169 19 C -0.023 4.023 20 N -0.215 5.215 21 C 0.030 3.970 22 Cl -0.003 7.003 23 H 0.141 0.859 24 H 0.119 0.881 25 H 0.138 0.862 26 H 0.096 0.904 27 H 0.139 0.861 28 H 0.046 0.954 29 H 0.019 0.981 30 H 0.076 0.924 31 H 0.207 0.793 32 H 0.220 0.780 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.863 -6.737 -19.473 20.624 hybrid contribution -0.455 0.878 1.382 1.699 sum 0.409 -5.859 -18.092 19.021 Atomic orbital electron populations 1.24132 0.95277 1.03276 0.95908 1.23192 0.96944 0.97767 1.03939 1.21638 0.93028 0.97073 0.90036 1.48048 1.07244 1.65460 1.10921 1.18742 0.93725 0.94343 0.78633 1.21704 1.42613 0.93355 1.00546 0.93071 1.25782 0.94506 1.03191 0.95236 1.70048 1.43358 1.37257 1.05777 0.85438 0.78292 0.79433 0.78101 1.19346 1.19121 1.20814 1.18455 0.82552 0.77709 0.88481 1.90765 1.57496 1.52447 1.43747 1.20697 0.94767 1.07362 0.95889 1.23047 1.01232 0.92364 0.92020 1.22792 0.96838 0.99533 0.97766 1.23819 0.90975 0.89498 0.98012 1.67170 1.39668 1.15432 0.99183 1.21756 0.88400 0.96461 0.90345 1.98436 1.67320 1.83680 1.50860 0.85935 0.88111 0.86200 0.90399 0.86143 0.95357 0.98056 0.92352 0.79341 0.77964 0.76850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 14.32 67.77 0.97 -2.13 16 2 C -0.20 -4.84 8.26 25.64 0.21 -4.63 16 3 C 0.10 3.15 5.34 85.63 0.46 3.61 16 4 N -0.59 -25.35 2.45 -834.02 -2.04 -27.39 16 5 C 0.27 14.42 5.22 85.63 0.45 14.87 16 6 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.71 5.46 84.65 0.46 1.17 16 9 N -0.92 -55.92 13.29 21.45 0.28 -55.64 16 10 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 C 0.54 24.00 7.25 86.76 0.63 24.63 16 15 O -0.56 -30.27 14.41 -3.90 -0.06 -30.33 16 16 C -0.18 -6.13 5.58 -19.97 -0.11 -6.24 16 17 C -0.06 -1.35 7.60 22.73 0.17 -1.18 16 18 C -0.15 -2.02 10.10 22.32 0.23 -1.79 16 19 C 0.13 2.21 11.17 84.71 0.95 3.15 16 20 N -0.50 -13.96 10.33 -185.59 -1.92 -15.88 16 21 C 0.19 6.74 7.30 85.05 0.62 7.36 16 22 Cl -0.03 -1.25 26.71 -2.72 -0.07 -1.33 16 23 H 0.12 1.98 8.06 -2.91 -0.02 1.96 16 24 H 0.10 2.13 7.84 -2.91 -0.02 2.11 16 25 H 0.12 2.66 7.63 -2.91 -0.02 2.63 16 26 H 0.08 2.49 7.78 -2.39 -0.02 2.47 16 27 H 0.12 2.95 4.00 -2.40 -0.01 2.94 16 28 H 0.03 1.54 8.07 -2.39 -0.02 1.53 16 29 H 0.00 0.08 7.34 -2.39 -0.02 0.07 16 30 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.19 3.53 3.14 -2.91 -0.01 3.52 16 32 H 0.20 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -79.14 301.11 4.63 -74.51 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 1.14 Total: 1.19 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.27 Total: 7.51 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.68 Total: -98.91 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.06 Total: -30.33 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.07 Total: -1.33 kcal Total: -79.14 4.63 -74.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293741925.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.081 kcal (2) G-P(sol) polarization free energy of solvation -79.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds