Wall clock time and date at job start Tue Mar 31 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99863 * 2 1 4 4 N 1.46502 * 109.47081 * 125.00220 * 3 2 1 5 5 C 1.46500 * 120.00359 * 262.76491 * 4 3 2 6 6 C 1.50694 * 109.47188 * 270.00281 * 5 4 3 7 7 H 1.07993 * 120.00277 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99862 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99727 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00030 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46993 * 59.99726 * 10 8 6 12 12 H 1.48498 * 109.47189 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47021 * 300.00306 * 10 8 6 14 14 C 1.34780 * 120.00017 * 82.76548 * 4 3 2 15 15 O 1.21517 * 120.00030 * 183.03702 * 14 4 3 16 16 C 1.48172 * 119.99993 * 3.03970 * 14 4 3 17 17 C 1.39267 * 119.71526 * 173.16950 * 16 14 4 18 18 C 1.38626 * 119.08878 * 179.97438 * 17 16 14 19 19 C 1.38564 * 118.50659 * 0.27862 * 18 17 16 20 20 C 1.38725 * 119.33946 * 359.47548 * 19 18 17 21 21 Cl 1.73598 * 119.56784 * 180.23040 * 20 19 18 22 22 N 1.31624 * 120.86972 * 0.53602 * 20 19 18 23 23 H 1.07995 * 119.99958 * 359.97438 * 1 2 3 24 24 H 1.07999 * 119.99577 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00343 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47141 * 5.00475 * 3 2 1 27 27 H 1.09003 * 109.47375 * 245.00118 * 3 2 1 28 28 H 1.09000 * 109.46756 * 30.00102 * 5 4 3 29 29 H 1.09002 * 109.47268 * 149.99489 * 5 4 3 30 30 H 0.97004 * 119.99541 * 179.97438 * 9 8 6 31 31 H 1.08004 * 120.45583 * 0.02562 * 17 16 14 32 32 H 1.07997 * 120.74647 * 179.97438 * 18 17 16 33 33 H 1.07994 * 120.32644 * 179.72471 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6150 2.0065 2.3755 6 6 3.0430 3.4501 2.3146 7 1 3.5471 3.8273 1.4372 8 6 2.7909 4.2894 3.3791 9 7 2.1766 3.8301 4.4474 10 14 3.3221 6.0787 3.3039 11 1 2.6559 6.7450 2.1561 12 1 2.9369 6.7627 4.5644 13 1 4.7952 6.1508 3.1311 14 6 4.1982 0.7359 1.0278 15 8 4.9476 0.7102 1.9840 16 6 4.6085 0.1122 -0.2521 17 6 5.9049 -0.3750 -0.3982 18 6 6.2748 -0.9566 -1.6011 19 6 5.3366 -1.0254 -2.6184 20 6 4.0612 -0.5244 -2.4020 21 17 2.8793 -0.6129 -3.6704 22 7 3.7371 0.0227 -1.2495 23 1 -0.5400 0.9353 0.0004 24 1 -0.5399 -0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1316 0.0897 27 1 2.6213 1.4027 -0.9314 28 1 1.5338 1.9532 2.5030 29 1 3.1047 1.5175 3.2176 30 1 1.9996 4.4205 5.1964 31 1 6.6122 -0.3016 0.4147 32 1 7.2732 -1.3428 -1.7437 33 1 5.5945 -1.4683 -3.5690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293894479.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:44 Heat of formation + Delta-G solvation = 36.773480 kcal Electronic energy + Delta-G solvation = -19394.048844 eV Core-core repulsion = 16254.330706 eV Total energy + Delta-G solvation = -3139.718138 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67615 -38.49984 -36.72056 -35.74190 -33.23348 -32.79139 -31.94622 -31.18191 -27.66559 -25.65713 -24.50802 -23.60407 -22.47146 -20.02731 -19.18349 -17.27051 -17.00675 -16.45658 -16.13067 -15.34473 -15.17627 -14.96332 -14.50060 -14.26171 -13.85189 -13.39854 -12.95885 -12.75226 -12.24376 -12.13512 -11.73863 -11.61490 -11.38146 -11.26846 -10.98908 -10.81194 -10.56810 -10.19668 -10.13219 -9.93237 -9.57911 -9.11470 -9.08354 -8.72886 -8.42355 -7.68306 -6.04052 -4.09236 0.55583 0.93011 1.64638 2.70244 3.01387 3.32999 3.36899 3.39915 3.71868 3.97149 4.29501 4.44713 4.65043 4.77336 4.84950 5.15251 5.22999 5.30733 5.47247 5.65871 5.72635 5.88036 6.05309 6.20324 6.33206 6.59238 7.00299 7.04972 7.18800 7.42038 7.42638 7.57059 7.91825 8.21609 8.33620 8.81266 8.99047 9.55445 11.03996 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.005320 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.067403 B = 5261.968338 C = 5828.681934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C 0.129 3.871 4 N -0.565 5.565 5 C 0.244 3.756 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.553 3.447 15 O -0.532 6.532 16 C 0.113 3.887 17 C -0.114 4.114 18 C -0.069 4.069 19 C -0.145 4.145 20 C 0.164 3.836 21 Cl -0.031 7.031 22 N -0.440 5.440 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 -10.809 -15.973 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.150 4.150 3 C 0.006 3.994 4 N -0.294 5.294 5 C 0.125 3.875 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.337 3.663 15 O -0.409 6.409 16 C -0.025 4.025 17 C -0.135 4.135 18 C -0.095 4.095 19 C -0.166 4.166 20 C -0.001 4.001 21 Cl -0.003 7.003 22 N -0.155 5.155 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.128 0.872 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.912 -10.399 -15.202 18.647 hybrid contribution 0.824 0.627 -0.340 1.090 sum 3.736 -9.772 -15.541 18.734 Atomic orbital electron populations 1.23705 0.95846 1.01285 1.03220 1.23174 0.95549 0.98894 0.97398 1.21100 0.92734 0.94601 0.90968 1.48179 1.13626 1.50911 1.16653 1.19417 0.96273 0.91710 0.80082 1.21373 1.38652 0.94327 1.02405 0.92429 1.24923 0.95024 0.98939 0.95067 1.69928 1.41344 1.36086 1.05835 0.86548 0.79181 0.84358 0.77278 1.20215 1.21131 1.20172 1.17718 0.82985 0.79943 0.85607 1.90773 1.52372 1.60163 1.37573 1.21694 0.90657 0.96893 0.93261 1.22269 0.96763 0.95720 0.98765 1.21603 0.99890 0.96140 0.91856 1.21977 0.92153 1.01199 1.01268 1.21826 0.89381 0.98117 0.90812 1.98410 1.58511 1.96556 1.46811 1.67742 1.35344 1.13068 0.99346 0.88602 0.89220 0.88486 0.90443 0.87229 0.94502 0.93583 0.92613 0.82670 0.83277 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.02 14.32 29.02 0.42 -2.61 16 2 C -0.13 -2.17 8.70 -36.02 -0.31 -2.48 16 3 C 0.13 2.40 5.45 -5.19 -0.03 2.38 16 4 N -0.57 -12.64 2.46 -177.43 -0.44 -13.08 16 5 C 0.24 6.50 5.15 -5.20 -0.03 6.47 16 6 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 10 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.55 11.97 7.59 -12.18 -0.09 11.88 16 15 O -0.53 -13.19 15.90 5.35 0.09 -13.11 16 16 C 0.11 1.90 6.62 -83.01 -0.55 1.35 16 17 C -0.11 -1.53 9.63 -39.06 -0.38 -1.90 16 18 C -0.07 -0.66 10.17 -39.32 -0.40 -1.06 16 19 C -0.14 -1.39 9.88 -39.28 -0.39 -1.78 16 20 C 0.16 2.04 7.27 -17.46 -0.13 1.91 16 21 Cl -0.03 -0.35 29.10 -51.86 -1.51 -1.85 16 22 N -0.44 -6.71 4.64 -6.94 -0.03 -6.74 16 23 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 24 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 25 H 0.10 1.62 7.53 -52.49 -0.40 1.23 16 26 H 0.08 1.48 7.67 -51.93 -0.40 1.08 16 27 H 0.11 1.95 5.26 -52.16 -0.27 1.67 16 28 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 29 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.16 2.03 7.66 -52.48 -0.40 1.62 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 307.57 15.07 4.63 4.63 Total: -1.00 -32.07 307.57 -7.35 -39.42 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -3.50 Total: -0.73 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.31 Total: 0.42 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.27 Total: -45.67 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.07 -7.35 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293894479.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.189 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds