Wall clock time and date at job start Tue Mar 31 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99863 * 2 1 4 4 N 1.46502 * 109.47081 * 125.00220 * 3 2 1 5 5 C 1.46500 * 120.00359 * 262.76491 * 4 3 2 6 6 C 1.50694 * 109.47188 * 270.00281 * 5 4 3 7 7 H 1.07993 * 120.00277 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99862 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99727 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00030 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46993 * 59.99726 * 10 8 6 12 12 H 1.48498 * 109.47189 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47021 * 300.00306 * 10 8 6 14 14 C 1.34780 * 120.00017 * 82.76548 * 4 3 2 15 15 O 1.21517 * 120.00030 * 183.03702 * 14 4 3 16 16 C 1.48172 * 119.99993 * 3.03970 * 14 4 3 17 17 C 1.39267 * 119.71526 * 173.16950 * 16 14 4 18 18 C 1.38626 * 119.08878 * 179.97438 * 17 16 14 19 19 C 1.38564 * 118.50659 * 0.27862 * 18 17 16 20 20 C 1.38725 * 119.33946 * 359.47548 * 19 18 17 21 21 Cl 1.73598 * 119.56784 * 180.23040 * 20 19 18 22 22 N 1.31624 * 120.86972 * 0.53602 * 20 19 18 23 23 H 1.07995 * 119.99958 * 359.97438 * 1 2 3 24 24 H 1.07999 * 119.99577 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00343 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47141 * 5.00475 * 3 2 1 27 27 H 1.09003 * 109.47375 * 245.00118 * 3 2 1 28 28 H 1.09000 * 109.46756 * 30.00102 * 5 4 3 29 29 H 1.09002 * 109.47268 * 149.99489 * 5 4 3 30 30 H 0.97004 * 119.99541 * 179.97438 * 9 8 6 31 31 H 1.08004 * 120.45583 * 0.02562 * 17 16 14 32 32 H 1.07997 * 120.74647 * 179.97438 * 18 17 16 33 33 H 1.07994 * 120.32644 * 179.72471 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6150 2.0065 2.3755 6 6 3.0430 3.4501 2.3146 7 1 3.5471 3.8273 1.4372 8 6 2.7909 4.2894 3.3791 9 7 2.1766 3.8301 4.4474 10 14 3.3221 6.0787 3.3039 11 1 2.6559 6.7450 2.1561 12 1 2.9369 6.7627 4.5644 13 1 4.7952 6.1508 3.1311 14 6 4.1982 0.7359 1.0278 15 8 4.9476 0.7102 1.9840 16 6 4.6085 0.1122 -0.2521 17 6 5.9049 -0.3750 -0.3982 18 6 6.2748 -0.9566 -1.6011 19 6 5.3366 -1.0254 -2.6184 20 6 4.0612 -0.5244 -2.4020 21 17 2.8793 -0.6129 -3.6704 22 7 3.7371 0.0227 -1.2495 23 1 -0.5400 0.9353 0.0004 24 1 -0.5399 -0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1316 0.0897 27 1 2.6213 1.4027 -0.9314 28 1 1.5338 1.9532 2.5030 29 1 3.1047 1.5175 3.2176 30 1 1.9996 4.4205 5.1964 31 1 6.6122 -0.3016 0.4147 32 1 7.2732 -1.3428 -1.7437 33 1 5.5945 -1.4683 -3.5690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293894479.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:43 Heat of formation + Delta-G solvation = 17.380057 kcal Electronic energy + Delta-G solvation = -19394.889806 eV Core-core repulsion = 16254.330706 eV Total energy + Delta-G solvation = -3140.559100 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87109 -40.00053 -37.63268 -37.37931 -35.18070 -33.84434 -33.61771 -32.29025 -29.62887 -27.10071 -26.14064 -24.62498 -24.08938 -21.49418 -20.55438 -18.71543 -18.51076 -18.25240 -17.16127 -16.96143 -16.46644 -16.29717 -16.16370 -15.72400 -15.22717 -14.62169 -14.39873 -14.28584 -14.07756 -13.35101 -13.15403 -12.99387 -12.91349 -12.70188 -12.59788 -12.30751 -12.25095 -12.18070 -11.74204 -11.33273 -11.05904 -10.66169 -10.46659 -10.12836 -10.03681 -9.48807 -8.24182 -6.39825 -0.49337 0.01579 0.72677 1.35851 1.38397 1.40512 1.48338 1.70861 2.22159 2.39873 2.68663 3.04940 3.11850 3.69296 3.80477 3.92849 4.09956 4.16044 4.28853 4.35989 4.62606 4.84369 4.94528 4.98602 5.03817 5.11034 5.18470 5.39472 5.48594 5.71856 5.76013 5.98650 6.01531 6.36659 6.62501 6.68345 7.16240 7.33701 8.83243 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.005320 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.067403 B = 5261.968338 C = 5828.681934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C 0.134 3.866 4 N -0.576 5.576 5 C 0.261 3.739 6 C -0.548 4.548 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.970 3.030 11 H -0.262 1.262 12 H -0.275 1.275 13 H -0.275 1.275 14 C 0.546 3.454 15 O -0.580 6.580 16 C 0.081 3.919 17 C -0.115 4.115 18 C -0.048 4.048 19 C -0.119 4.119 20 C 0.151 3.849 21 Cl -0.020 7.020 22 N -0.459 5.459 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.121 0.879 28 H 0.023 0.977 29 H 0.004 0.996 30 H 0.269 0.731 31 H 0.151 0.849 32 H 0.199 0.801 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.507 -11.402 -18.902 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.166 4.166 3 C 0.012 3.988 4 N -0.304 5.304 5 C 0.140 3.860 6 C -0.586 4.586 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.793 3.207 11 H -0.187 1.187 12 H -0.200 1.200 13 H -0.200 1.200 14 C 0.333 3.667 15 O -0.461 6.461 16 C -0.055 4.055 17 C -0.137 4.137 18 C -0.073 4.073 19 C -0.139 4.139 20 C -0.016 4.016 21 Cl 0.008 6.992 22 N -0.174 5.174 23 H 0.116 0.884 24 H 0.132 0.868 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.041 0.959 29 H 0.022 0.978 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.216 0.784 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.837 -11.006 -18.170 21.587 hybrid contribution 0.511 0.691 0.455 0.972 sum 4.349 -10.315 -17.715 20.956 Atomic orbital electron populations 1.23938 0.95259 1.02583 1.00421 1.22972 0.96002 0.97703 0.99904 1.21205 0.92141 0.95433 0.89991 1.48160 1.15048 1.51032 1.16152 1.18850 0.94657 0.91231 0.81227 1.21612 1.39018 0.95378 1.02583 0.92965 1.25860 0.94732 1.03799 0.94448 1.70050 1.42048 1.37896 1.06501 0.85441 0.78659 0.78493 0.78068 1.18699 1.20016 1.20027 1.18475 0.81904 0.79070 0.87213 1.90713 1.53496 1.62004 1.39892 1.20869 0.92493 1.00278 0.91889 1.22381 0.95126 0.95637 1.00513 1.22097 1.01812 0.93876 0.89550 1.22504 0.90351 0.98363 1.02699 1.22177 0.90941 0.98331 0.90108 1.98416 1.58500 1.96488 1.45794 1.67386 1.35711 1.14135 1.00131 0.88362 0.86750 0.88583 0.91758 0.86159 0.95928 0.97783 0.92232 0.83145 0.78419 0.79354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.35 14.32 67.78 0.97 -4.38 16 2 C -0.15 -4.91 8.70 25.65 0.22 -4.69 16 3 C 0.13 5.19 5.45 85.63 0.47 5.65 16 4 N -0.58 -27.36 2.46 -833.54 -2.05 -29.41 16 5 C 0.26 14.90 5.15 85.63 0.44 15.34 16 6 C -0.55 -32.69 9.39 25.60 0.24 -32.45 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 8 C 0.01 0.65 5.46 84.66 0.46 1.11 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 10 Si 0.97 45.57 29.54 68.60 2.03 47.59 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.55 25.05 7.59 86.88 0.66 25.71 16 15 O -0.58 -30.90 15.90 -3.77 -0.06 -30.96 16 16 C 0.08 2.77 6.62 41.89 0.28 3.04 16 17 C -0.12 -2.95 9.63 22.61 0.22 -2.73 16 18 C -0.05 -0.71 10.17 22.44 0.23 -0.48 16 19 C -0.12 -1.74 9.88 22.46 0.22 -1.51 16 20 C 0.15 3.35 7.27 84.84 0.62 3.97 16 21 Cl -0.02 -0.40 29.10 -2.72 -0.08 -0.48 16 22 N -0.46 -13.68 4.64 -175.86 -0.82 -14.49 16 23 H 0.10 2.80 7.84 -2.91 -0.02 2.78 16 24 H 0.11 2.76 8.06 -2.91 -0.02 2.74 16 25 H 0.10 3.24 7.53 -2.91 -0.02 3.22 16 26 H 0.06 2.58 7.67 -2.39 -0.02 2.56 16 27 H 0.12 4.38 5.26 -2.84 -0.01 4.36 16 28 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 29 H 0.00 0.26 7.38 -2.39 -0.02 0.24 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.15 3.92 7.66 -2.91 -0.02 3.90 16 32 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -74.88 307.57 5.45 -69.43 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.12 Total: 6.32 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.03 Total: 8.58 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -2.58 Total: -100.49 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.06 Total: -30.96 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -74.88 5.45 -69.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293894479.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.806 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds