Wall clock time and date at job start Tue Mar 31 2020 01:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91459 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46858 * 195.02341 * 6 5 4 8 8 N 1.46904 * 109.47155 * 315.02132 * 6 5 4 9 9 C 1.46891 * 111.00320 * 204.99967 * 8 6 5 10 10 C 1.50699 * 109.47361 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99971 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00086 * 179.97438 * 10 9 8 13 13 N 1.31523 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00087 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47030 * 89.99952 * 14 12 10 16 16 H 1.48504 * 109.47002 * 210.00018 * 14 12 10 17 17 H 1.48490 * 109.46761 * 330.00061 * 14 12 10 18 18 C 1.52995 * 109.47198 * 75.02093 * 6 5 4 19 19 F 1.39900 * 109.47517 * 60.00020 * 18 6 5 20 20 F 1.39904 * 109.47299 * 180.02562 * 18 6 5 21 21 F 1.39905 * 109.47427 * 300.00283 * 18 6 5 22 22 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 23 23 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 24 24 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 25 25 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 26 26 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 27 27 H 1.00905 * 110.99685 * 81.04201 * 8 6 5 28 28 H 1.09004 * 109.47294 * 300.00138 * 9 8 6 29 29 H 1.09001 * 109.46939 * 60.00036 * 9 8 6 30 30 H 0.97000 * 119.99575 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1269 -0.0001 7 1 3.9655 -3.0481 -0.2668 8 7 5.5464 -1.8619 -0.9789 9 6 6.1551 -3.1141 -1.4472 10 6 7.2379 -2.8028 -2.4480 11 1 7.4528 -1.7773 -2.7097 12 6 7.9550 -3.8272 -3.0288 13 7 7.6936 -5.0761 -2.7099 14 14 9.2977 -3.4413 -4.2689 15 1 10.5916 -3.2705 -3.5604 16 1 9.4094 -4.5583 -5.2411 17 1 8.9595 -2.1886 -4.9908 18 6 5.0983 -2.2726 1.3934 19 9 4.0862 -2.5250 2.3256 20 9 6.0082 -3.3353 1.3930 21 9 5.7632 -1.0902 1.7357 22 7 2.2200 -1.1083 -0.0010 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 1.8390 2.1309 0.0037 27 1 6.2442 -1.2417 -0.5960 28 1 6.5854 -3.6481 -0.6000 29 1 5.3928 -3.7346 -1.9185 30 1 8.1984 -5.7968 -3.1182 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298541258.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:32 Heat of formation + Delta-G solvation = -129.236980 kcal Electronic energy + Delta-G solvation = -20039.863484 eV Core-core repulsion = 16353.133558 eV Total energy + Delta-G solvation = -3686.729925 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.32538 -48.82329 -48.78188 -40.93021 -37.92079 -34.94606 -33.08016 -30.74270 -28.52996 -27.73620 -25.99561 -23.98627 -23.03847 -20.82554 -19.71605 -19.62189 -19.32337 -18.87012 -18.15692 -16.92536 -16.37307 -15.89542 -15.76190 -15.71590 -15.28850 -15.24350 -15.17591 -14.93102 -14.90577 -14.41899 -14.25053 -13.96926 -13.59653 -13.40939 -13.29776 -13.10696 -12.68481 -12.64475 -12.18554 -12.09716 -11.42652 -10.78014 -10.69992 -10.41613 -9.71951 -9.67984 -8.23592 -6.34687 -0.42588 0.33468 0.78670 1.42656 1.44081 1.44945 1.56334 1.76738 2.30718 2.43884 2.61839 2.80557 3.07443 3.11929 3.52136 3.81700 3.94944 4.27769 4.36322 4.82128 4.84547 4.88557 4.95370 5.13681 5.36997 5.48434 5.85913 6.04443 6.28361 6.69217 6.79163 7.35023 8.87898 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.005496 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.869027 B = 5093.209743 C = 5647.547852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.041 3.959 3 C -0.250 4.250 4 S 0.190 5.810 5 C 0.020 3.980 6 C 0.130 3.870 7 H 0.131 0.869 8 N -0.654 5.654 9 C 0.195 3.805 10 C -0.537 4.537 11 H 0.069 0.931 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.972 3.028 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.264 1.264 18 C 0.427 3.573 19 F -0.179 7.179 20 F -0.179 7.179 21 F -0.175 7.175 22 N -0.480 5.480 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.103 0.897 26 H 0.217 0.783 27 H 0.349 0.651 28 H -0.002 1.002 29 H 0.012 0.988 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 12.931 7.577 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.390 4.390 4 S 0.445 5.555 5 C -0.257 4.257 6 C 0.013 3.987 7 H 0.149 0.851 8 N -0.285 5.285 9 C 0.068 3.932 10 C -0.575 4.575 11 H 0.087 0.913 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.797 3.203 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.188 1.188 18 C 0.369 3.631 19 F -0.161 7.161 20 F -0.160 7.160 21 F -0.157 7.157 22 N -0.196 5.196 23 H 0.102 0.898 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.234 0.766 27 H 0.169 0.831 28 H 0.016 0.984 29 H 0.030 0.970 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.327 12.810 7.010 17.886 hybrid contribution 0.497 -0.831 0.391 1.044 sum -9.830 11.979 7.401 17.173 Atomic orbital electron populations 1.20454 0.84581 1.04393 1.03820 1.20839 0.99860 0.85973 1.02507 1.27464 0.94630 1.05398 1.11467 1.83935 1.07424 0.99587 1.64581 1.25902 0.93665 0.98590 1.07563 1.21060 0.93448 0.98605 0.85617 0.85133 1.60681 1.15352 1.18138 1.34365 1.19631 0.93477 0.85355 0.94724 1.21399 1.17691 0.93878 1.24580 0.91292 1.25873 0.99852 0.94592 0.98901 1.70082 1.42345 0.99767 1.44684 0.85335 0.78700 0.78015 0.78275 1.19730 1.20902 1.18801 1.21778 0.77145 0.73968 0.90259 1.93179 1.59885 1.94039 1.68955 1.93223 1.68583 1.57498 1.96731 1.93157 1.81744 1.47322 1.93444 1.66002 1.04320 1.34030 1.15272 0.89846 0.91189 0.87876 0.76643 0.83081 0.98404 0.97008 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.31 71.23 0.73 -0.49 16 2 C 0.04 1.01 6.74 41.52 0.28 1.29 16 3 C -0.25 -5.24 11.13 66.78 0.74 -4.50 16 4 S 0.19 4.99 22.19 -56.49 -1.25 3.73 16 5 C 0.02 0.65 5.93 88.52 0.52 1.17 16 6 C 0.13 4.77 2.62 44.17 0.12 4.88 16 7 H 0.13 5.05 7.80 -2.39 -0.02 5.03 16 8 N -0.65 -27.06 6.02 -499.48 -3.01 -30.07 16 9 C 0.19 9.94 5.14 85.56 0.44 10.38 16 10 C -0.54 -29.43 9.32 25.60 0.24 -29.19 16 11 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 12 C 0.01 0.38 5.46 84.65 0.46 0.85 16 13 N -0.93 -54.74 13.29 21.45 0.28 -54.45 16 14 Si 0.97 43.20 29.54 68.60 2.03 45.22 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 C 0.43 15.06 2.75 71.98 0.20 15.25 16 19 F -0.18 -6.09 17.02 44.97 0.77 -5.32 16 20 F -0.18 -7.12 15.04 44.97 0.68 -6.45 16 21 F -0.18 -5.73 15.61 44.97 0.70 -5.03 16 22 N -0.48 -15.52 10.53 -179.40 -1.89 -17.41 16 23 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16 25 H 0.10 1.08 8.12 -2.39 -0.02 1.06 16 26 H 0.22 2.62 8.06 -2.91 -0.02 2.60 16 27 H 0.35 13.64 7.88 -89.69 -0.71 12.93 16 28 H 0.00 -0.10 6.03 -2.39 -0.01 -0.11 16 29 H 0.01 0.66 8.06 -2.39 -0.02 0.64 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -63.63 288.30 2.53 -61.10 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.49 Total: 9.03 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 3.74 Total: -0.36 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -4.61 Total: -101.94 kcal Atomic # 9 Polarization: -18.94 SS G_CDS: 2.14 Total: -16.79 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.25 Total: 3.73 kcal Total: -63.63 2.53 -61.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298541258.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.132 kcal (2) G-P(sol) polarization free energy of solvation -63.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds