Wall clock time and date at job start Tue Mar 31 2020 01:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33637 * 122.75076 * 2 1 4 4 S 1.76201 * 107.92067 * 179.76142 * 3 2 1 5 5 C 1.70970 * 90.28654 * 0.28208 * 4 3 2 6 6 C 1.50701 * 124.91982 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47242 * 164.69567 * 6 5 4 8 8 N 1.46895 * 109.46671 * 44.69706 * 6 5 4 9 9 C 1.46906 * 110.99789 * 155.00024 * 8 6 5 10 10 C 1.50703 * 109.47109 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99876 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99989 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99944 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47285 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47233 * 119.99722 * 14 12 10 17 17 H 1.48500 * 109.46790 * 239.99650 * 14 12 10 18 18 C 1.52995 * 109.47125 * 284.69842 * 6 5 4 19 19 F 1.39898 * 109.47226 * 179.97438 * 18 6 5 20 20 F 1.39902 * 109.47384 * 300.00037 * 18 6 5 21 21 F 1.39906 * 109.47381 * 59.99871 * 18 6 5 22 22 N 1.29034 * 110.16729 * 359.71376 * 5 4 3 23 23 H 1.08998 * 109.47214 * 270.02220 * 1 2 3 24 24 H 1.09003 * 109.47191 * 30.02074 * 1 2 3 25 25 H 1.09002 * 109.47657 * 150.01999 * 1 2 3 26 26 H 1.07995 * 126.03716 * 359.97438 * 3 2 1 27 27 H 1.00899 * 111.00672 * 31.04969 * 8 6 5 28 28 H 1.08992 * 109.47459 * 299.99826 * 9 8 6 29 29 H 1.09004 * 109.47040 * 59.99976 * 9 8 6 30 30 H 0.96997 * 119.99752 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6729 0.0070 5 6 3.5039 -0.9820 0.0008 6 6 4.4834 -2.1273 0.0020 7 1 3.9651 -3.0483 0.2686 8 7 5.5455 -1.8620 0.9815 9 6 6.1537 -3.1143 1.4506 10 6 7.2368 -2.8028 2.4511 11 1 7.4515 -1.7771 2.7127 12 6 7.9535 -3.8271 3.0325 13 7 7.6917 -5.0760 2.7144 14 14 9.2955 -3.4410 4.2733 15 1 9.3918 -1.9706 4.4567 16 1 8.9680 -4.0819 5.5722 17 1 10.5938 -3.9636 3.7768 18 6 5.0990 -2.2733 -1.3910 19 9 6.0087 -3.3362 -1.3897 20 9 4.0875 -2.5258 -2.3238 21 9 5.7643 -1.0911 -1.7331 22 7 2.2198 -1.1084 0.0004 23 1 -0.3633 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 1.8392 2.1307 -0.0004 27 1 5.1958 -1.3177 1.7558 28 1 5.3912 -3.7345 1.9214 29 1 6.5846 -3.6485 0.6037 30 1 8.1957 -5.7966 3.1237 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298541263.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:34 Heat of formation + Delta-G solvation = -128.655548 kcal Electronic energy + Delta-G solvation = -20024.936325 eV Core-core repulsion = 16338.231613 eV Total energy + Delta-G solvation = -3686.704713 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.16396 -48.69643 -48.60931 -41.01121 -37.87913 -34.94408 -33.06268 -30.74487 -28.56035 -27.82282 -25.99136 -23.92982 -22.98090 -20.85832 -19.81546 -19.49000 -19.01288 -18.67591 -18.03775 -16.87860 -16.42303 -16.08376 -15.88792 -15.49088 -15.42571 -15.07559 -15.06087 -14.84166 -14.78098 -14.63805 -14.27574 -13.95142 -13.59343 -13.34492 -13.23332 -12.99785 -12.68633 -12.61515 -12.17722 -12.07732 -11.34781 -10.80902 -10.69820 -10.46307 -9.81384 -9.65547 -8.23447 -6.34339 -0.49608 0.26743 0.75921 1.43267 1.44505 1.49924 1.57593 1.73228 2.33573 2.45553 2.63870 2.91305 3.11892 3.23029 3.65524 3.76537 3.95912 4.24724 4.32978 4.79771 4.82965 4.86784 4.94406 5.12093 5.34210 5.49920 5.87141 6.10002 6.29662 6.63477 6.80412 7.35476 8.88568 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.005500 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.661341 B = 5089.664509 C = 5649.426637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.039 3.961 3 C -0.247 4.247 4 S 0.210 5.790 5 C -0.009 4.009 6 C 0.125 3.875 7 H 0.098 0.902 8 N -0.661 5.661 9 C 0.195 3.805 10 C -0.534 4.534 11 H 0.070 0.930 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.973 3.027 15 H -0.260 1.260 16 H -0.279 1.279 17 H -0.281 1.281 18 C 0.466 3.534 19 F -0.180 7.180 20 F -0.180 7.180 21 F -0.171 7.171 22 N -0.474 5.474 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.219 0.781 27 H 0.356 0.644 28 H -0.025 1.025 29 H 0.028 0.972 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 13.313 -6.114 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.386 4.386 4 S 0.465 5.535 5 C -0.285 4.285 6 C 0.009 3.991 7 H 0.116 0.884 8 N -0.295 5.295 9 C 0.068 3.932 10 C -0.572 4.572 11 H 0.089 0.911 12 C -0.194 4.194 13 N -0.571 5.571 14 Si 0.798 3.202 15 H -0.184 1.184 16 H -0.204 1.204 17 H -0.206 1.206 18 C 0.410 3.590 19 F -0.162 7.162 20 F -0.162 7.162 21 F -0.153 7.153 22 N -0.190 5.190 23 H 0.103 0.897 24 H 0.121 0.879 25 H 0.087 0.913 26 H 0.235 0.765 27 H 0.177 0.823 28 H -0.008 1.008 29 H 0.046 0.954 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.867 13.260 -6.565 18.358 hybrid contribution -0.649 -1.002 0.830 1.455 sum -11.516 12.257 -5.734 17.770 Atomic orbital electron populations 1.20462 0.84555 1.04397 1.03895 1.20847 0.99881 0.85949 1.02716 1.27596 0.95101 1.05485 1.10460 1.84209 1.06414 0.98744 1.64115 1.25948 0.93739 0.99127 1.09695 1.20687 0.89955 0.97263 0.91221 0.88444 1.60617 1.27827 1.22638 1.18423 1.19645 0.93214 0.85196 0.95129 1.21435 1.18348 0.93836 1.23588 0.91143 1.25897 0.99894 0.94594 0.99004 1.70093 1.42471 0.99816 1.44694 0.85270 0.78115 0.78838 0.77989 1.18407 1.20434 1.20635 1.20327 0.76386 0.74028 0.88257 1.93189 1.68668 1.57619 1.96679 1.93166 1.60297 1.94146 1.68556 1.93156 1.81581 1.47158 1.93361 1.66059 1.04246 1.34171 1.14572 0.89708 0.87851 0.91293 0.76453 0.82255 1.00774 0.95404 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.31 71.23 0.73 -0.43 16 2 C 0.04 0.91 6.74 41.52 0.28 1.19 16 3 C -0.25 -4.83 11.13 66.78 0.74 -4.09 16 4 S 0.21 5.37 22.10 -56.49 -1.25 4.12 16 5 C -0.01 -0.30 5.59 88.52 0.50 0.20 16 6 C 0.12 4.64 2.62 44.17 0.12 4.76 16 7 H 0.10 3.82 7.80 -2.39 -0.02 3.80 16 8 N -0.66 -27.45 6.02 -499.47 -3.01 -30.46 16 9 C 0.19 10.07 5.15 85.56 0.44 10.51 16 10 C -0.53 -29.37 9.32 25.60 0.24 -29.13 16 11 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 12 C 0.00 0.27 5.46 84.65 0.46 0.74 16 13 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 14 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 C 0.47 17.49 2.82 71.98 0.20 17.69 16 19 F -0.18 -7.64 15.04 44.97 0.68 -6.97 16 20 F -0.18 -6.34 17.03 44.97 0.77 -5.58 16 21 F -0.17 -6.18 16.26 44.97 0.73 -5.45 16 22 N -0.47 -14.77 10.53 -179.40 -1.89 -16.66 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 0.99 8.12 -2.39 -0.02 0.97 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 27 H 0.36 13.83 8.24 -89.69 -0.74 13.10 16 28 H -0.03 -1.41 8.05 -2.39 -0.02 -1.43 16 29 H 0.03 1.57 6.03 -2.38 -0.01 1.55 16 30 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -64.60 288.95 2.50 -62.09 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.45 Total: 7.04 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 3.71 Total: 1.43 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -4.61 Total: -102.11 kcal Atomic # 9 Polarization: -20.16 SS G_CDS: 2.17 Total: -17.99 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.25 Total: 4.12 kcal Total: -64.60 2.50 -62.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298541263.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.562 kcal (2) G-P(sol) polarization free energy of solvation -64.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds