Wall clock time and date at job start Tue Mar 31 2020 01:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 N 1.46497 * 109.47416 * 240.00016 * 2 1 3 5 5 C 1.36935 * 119.99902 * 59.99682 * 4 2 1 6 6 H 1.08007 * 119.99915 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00393 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99727 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00296 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47195 * 59.99883 * 9 7 5 11 11 H 1.48503 * 109.46921 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46907 * 299.99485 * 9 7 5 13 13 C 1.50706 * 109.47019 * 120.00202 * 2 1 3 14 14 N 1.29026 * 124.91150 * 299.99551 * 13 2 1 15 15 C 1.31787 * 117.11819 * 180.02562 * 14 13 2 16 16 C 1.50703 * 122.74684 * 179.97438 * 15 14 13 17 17 F 1.39905 * 109.47157 * 89.99994 * 16 15 14 18 18 F 1.39900 * 109.47159 * 330.00294 * 16 15 14 19 19 F 1.39897 * 109.47274 * 209.99985 * 16 15 14 20 20 C 1.33637 * 114.50489 * 0.23480 * 15 14 13 21 21 S 1.70978 * 124.91702 * 120.00240 * 13 2 1 22 22 H 1.08999 * 109.46802 * 299.99545 * 1 2 3 23 23 H 1.08997 * 109.47196 * 59.99927 * 1 2 3 24 24 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47186 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47086 * 300.00140 * 3 2 1 27 27 H 1.09010 * 109.46626 * 60.00013 * 3 2 1 28 28 H 0.96994 * 120.00421 * 240.00446 * 4 2 1 29 29 H 0.97003 * 119.99776 * 179.97438 * 8 7 5 30 30 H 1.07997 * 126.03998 * 179.76897 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6876 -0.2228 -2.4398 6 1 1.0669 0.6556 -2.5389 7 6 2.1499 -0.8773 -3.5733 8 7 2.9058 -1.9481 -3.4525 9 14 1.6991 -0.2387 -5.2699 10 1 2.2034 1.1491 -5.4264 11 1 2.3137 -1.1079 -6.3053 12 1 0.2225 -0.2496 -5.4266 13 6 2.0324 -0.7105 1.2305 14 7 1.7798 -0.3532 2.4443 15 6 2.2996 -1.0876 3.4072 16 6 2.0868 -0.7855 4.8682 17 9 0.9440 -1.4535 5.3210 18 9 1.9199 0.5929 5.0399 19 9 3.1989 -1.2153 5.6001 20 6 3.0355 -2.1189 2.9820 21 16 3.0195 -2.1065 1.2201 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 2.5760 -1.4792 -1.1072 29 1 3.2286 -2.4057 -4.2446 30 1 3.5476 -2.8348 3.6077 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309393183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:00 Heat of formation + Delta-G solvation = -94.158175 kcal Electronic energy + Delta-G solvation = -19855.606469 eV Core-core repulsion = 16170.397675 eV Total energy + Delta-G solvation = -3685.208794 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.16191 -47.71743 -47.59578 -39.92155 -36.68502 -32.64350 -30.62925 -28.80033 -26.91209 -26.57052 -25.28082 -23.57197 -20.80568 -19.26012 -18.76606 -18.54498 -18.07562 -17.33953 -16.58431 -15.17532 -14.82701 -14.63794 -14.45663 -14.31258 -14.08226 -13.91583 -13.78120 -13.77341 -13.25414 -12.89850 -12.77708 -12.74792 -11.58590 -11.54426 -11.31144 -11.19704 -10.94047 -10.81248 -10.72025 -10.17516 -9.84426 -9.46110 -9.43069 -9.15062 -8.90896 -7.21360 -5.91037 -3.23932 0.60932 1.27566 1.73096 2.46512 2.61264 3.37651 3.42024 3.42958 3.54915 4.04041 4.37451 4.39139 4.62711 5.07767 5.17557 5.41102 5.42568 5.70994 5.84189 5.91423 6.32060 6.47091 6.49947 6.61458 6.82510 6.93845 7.53908 7.61830 8.23791 9.35496 9.82130 10.17857 11.31381 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.037405 B = 0.004724 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.377439 B = 5925.391581 C = 6323.352095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.268 3.732 3 C -0.142 4.142 4 N -0.721 5.721 5 C -0.241 4.241 6 H 0.078 0.922 7 C -0.007 4.007 8 N -0.932 5.932 9 Si 0.911 3.089 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.284 1.284 13 C 0.077 3.923 14 N -0.455 5.455 15 C -0.023 4.023 16 C 0.548 3.452 17 F -0.173 7.173 18 F -0.166 7.166 19 F -0.174 7.174 20 C -0.241 4.241 21 S 0.227 5.773 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.380 0.620 29 H 0.259 0.741 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 0.151 14.006 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.174 3.826 3 C -0.203 4.203 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.096 0.904 7 C -0.204 4.204 8 N -0.579 5.579 9 Si 0.741 3.259 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.211 1.211 13 C -0.202 4.202 14 N -0.168 5.168 15 C -0.159 4.159 16 C 0.491 3.509 17 F -0.154 7.154 18 F -0.147 7.147 19 F -0.155 7.155 20 C -0.383 4.383 21 S 0.487 5.513 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.216 0.784 29 H 0.068 0.932 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.010 0.032 13.138 13.138 hybrid contribution -0.124 0.167 0.259 0.332 sum -0.114 0.199 13.397 13.399 Atomic orbital electron populations 1.22174 0.94796 1.01807 1.01511 1.18265 0.93359 0.90923 0.80085 1.22174 1.01037 0.95547 1.01521 1.42506 1.61265 1.32823 1.00041 1.19048 1.26551 1.09209 0.82316 0.90417 1.24758 0.99967 0.97663 0.97976 1.69643 1.38782 1.20561 1.28918 0.86222 0.77975 0.77958 0.83751 1.21065 1.21621 1.21059 1.27751 0.98678 0.97480 0.96263 1.65729 1.23315 1.29592 0.98178 1.19850 1.04750 0.97518 0.93819 1.17271 0.73838 0.74639 0.85176 1.93223 1.51215 1.80613 1.90378 1.93221 1.95162 1.30254 1.96040 1.93189 1.53257 1.89825 1.79247 1.27114 1.06266 1.03782 1.01181 1.84674 1.44133 1.25092 0.97425 0.92962 0.91175 0.93024 0.93029 0.91177 0.92939 0.78362 0.93168 0.79733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.42 37.16 0.31 -2.29 16 2 C 0.27 5.24 1.11 -132.97 -0.15 5.09 16 3 C -0.14 -2.60 8.42 37.16 0.31 -2.29 16 4 N -0.72 -16.83 5.11 -48.30 -0.25 -17.08 16 5 C -0.24 -6.16 8.67 -15.06 -0.13 -6.29 16 6 H 0.08 1.90 6.69 -52.48 -0.35 1.55 16 7 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 8 N -0.93 -26.44 13.06 55.49 0.72 -25.72 16 9 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.08 1.39 5.85 -13.45 -0.08 1.31 16 14 N -0.46 -7.92 10.32 -8.05 -0.08 -8.00 16 15 C -0.02 -0.35 6.20 -84.22 -0.52 -0.88 16 16 C 0.55 7.58 3.49 36.01 0.13 7.71 16 17 F -0.17 -2.38 17.30 2.25 0.04 -2.34 16 18 F -0.17 -2.44 17.16 2.25 0.04 -2.40 16 19 F -0.17 -2.15 16.82 2.25 0.04 -2.12 16 20 C -0.24 -3.26 10.69 29.12 0.31 -2.94 16 21 S 0.23 3.60 21.27 -107.50 -2.29 1.32 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 1.30 7.27 -51.93 -0.38 0.92 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.29 7.27 -51.93 -0.38 0.92 16 27 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 28 H 0.38 9.21 5.95 -40.82 -0.24 8.97 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.19 1.86 8.00 -52.49 -0.42 1.44 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -27.87 286.32 -4.99 -32.86 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -2.59 Total: 3.84 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 0.09 Total: -0.87 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.39 Total: -50.80 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.12 Total: -6.86 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -2.29 Total: 1.32 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.87 -4.99 -32.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309393183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.300 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds