Wall clock time and date at job start Tue Mar 31 2020 01:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 N 1.46497 * 109.47416 * 240.00016 * 2 1 3 5 5 C 1.36935 * 119.99902 * 59.99682 * 4 2 1 6 6 H 1.08007 * 119.99915 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00393 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99727 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00296 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47195 * 59.99883 * 9 7 5 11 11 H 1.48503 * 109.46921 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46907 * 299.99485 * 9 7 5 13 13 C 1.50706 * 109.47019 * 120.00202 * 2 1 3 14 14 N 1.29026 * 124.91150 * 299.99551 * 13 2 1 15 15 C 1.31787 * 117.11819 * 180.02562 * 14 13 2 16 16 C 1.50703 * 122.74684 * 179.97438 * 15 14 13 17 17 F 1.39905 * 109.47157 * 89.99994 * 16 15 14 18 18 F 1.39900 * 109.47159 * 330.00294 * 16 15 14 19 19 F 1.39897 * 109.47274 * 209.99985 * 16 15 14 20 20 C 1.33637 * 114.50489 * 0.23480 * 15 14 13 21 21 S 1.70978 * 124.91702 * 120.00240 * 13 2 1 22 22 H 1.08999 * 109.46802 * 299.99545 * 1 2 3 23 23 H 1.08997 * 109.47196 * 59.99927 * 1 2 3 24 24 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47186 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47086 * 300.00140 * 3 2 1 27 27 H 1.09010 * 109.46626 * 60.00013 * 3 2 1 28 28 H 0.96994 * 120.00421 * 240.00446 * 4 2 1 29 29 H 0.97003 * 119.99776 * 179.97438 * 8 7 5 30 30 H 1.07997 * 126.03998 * 179.76897 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6876 -0.2228 -2.4398 6 1 1.0669 0.6556 -2.5389 7 6 2.1499 -0.8773 -3.5733 8 7 2.9058 -1.9481 -3.4525 9 14 1.6991 -0.2387 -5.2699 10 1 2.2034 1.1491 -5.4264 11 1 2.3137 -1.1079 -6.3053 12 1 0.2225 -0.2496 -5.4266 13 6 2.0324 -0.7105 1.2305 14 7 1.7798 -0.3532 2.4443 15 6 2.2996 -1.0876 3.4072 16 6 2.0868 -0.7855 4.8682 17 9 0.9440 -1.4535 5.3210 18 9 1.9199 0.5929 5.0399 19 9 3.1989 -1.2153 5.6001 20 6 3.0355 -2.1189 2.9820 21 16 3.0195 -2.1065 1.2201 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 2.5760 -1.4792 -1.1072 29 1 3.2286 -2.4057 -4.2446 30 1 3.5476 -2.8348 3.6077 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309393183.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:00 Heat of formation + Delta-G solvation = -111.031800 kcal Electronic energy + Delta-G solvation = -19856.338164 eV Core-core repulsion = 16170.397675 eV Total energy + Delta-G solvation = -3685.940490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.23975 -48.76449 -48.70477 -41.19922 -38.27249 -34.47508 -32.03250 -30.51584 -28.05901 -28.05426 -26.85200 -25.19181 -22.15190 -20.53521 -20.06337 -19.62605 -19.26569 -19.15934 -17.81714 -16.82734 -16.24770 -16.02319 -15.62502 -15.49379 -15.46220 -15.15037 -14.88863 -14.86653 -14.73887 -14.53019 -14.21845 -13.98439 -13.30210 -13.04518 -12.79476 -12.71826 -12.54249 -12.48384 -12.26374 -11.98798 -11.69116 -11.03889 -10.81919 -10.61638 -10.24580 -9.11963 -7.93172 -5.24854 -0.60434 0.06090 0.47886 1.20143 1.48357 1.53578 1.54746 1.60295 2.37298 2.58594 2.93083 3.26220 3.28821 3.42774 3.72119 4.00973 4.03989 4.25825 4.36942 4.53307 4.87305 4.95831 5.00448 5.09265 5.31285 5.43968 5.59415 6.22026 6.33928 7.34187 7.95564 8.23220 9.30035 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.037405 B = 0.004724 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.377439 B = 5925.391581 C = 6323.352095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 C -0.134 4.134 4 N -0.731 5.731 5 C -0.232 4.232 6 H 0.086 0.914 7 C -0.067 4.067 8 N -0.967 5.967 9 Si 0.969 3.031 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.278 1.278 13 C 0.050 3.950 14 N -0.461 5.461 15 C -0.046 4.046 16 C 0.557 3.443 17 F -0.172 7.172 18 F -0.172 7.172 19 F -0.162 7.162 20 C -0.207 4.207 21 S 0.219 5.781 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.374 0.626 29 H 0.252 0.748 30 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 0.371 15.195 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 C -0.195 4.195 4 N -0.375 5.375 5 C -0.363 4.363 6 H 0.104 0.896 7 C -0.260 4.260 8 N -0.617 5.617 9 Si 0.799 3.201 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.204 1.204 13 C -0.228 4.228 14 N -0.175 5.175 15 C -0.181 4.181 16 C 0.499 3.501 17 F -0.153 7.153 18 F -0.153 7.153 19 F -0.144 7.144 20 C -0.348 4.348 21 S 0.478 5.522 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.209 0.791 29 H 0.061 0.939 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.160 0.294 14.369 14.373 hybrid contribution -0.070 0.085 0.036 0.116 sum -0.229 0.379 14.405 14.412 Atomic orbital electron populations 1.22078 0.94000 1.01393 1.02022 1.18354 0.93882 0.91247 0.79675 1.22077 1.00415 0.94962 1.02023 1.42658 1.61239 1.32913 1.00733 1.19401 1.24995 1.08644 0.83261 0.89624 1.25476 1.00913 0.98368 1.01201 1.69784 1.40703 1.22090 1.29155 0.85277 0.77750 0.77309 0.79802 1.20431 1.22544 1.20423 1.27367 1.00597 0.98861 0.95991 1.65663 1.23375 1.30166 0.98253 1.20098 1.05649 0.98176 0.94174 1.17037 0.74127 0.74362 0.84528 1.93229 1.51265 1.80537 1.90282 1.93210 1.95234 1.30848 1.96019 1.93215 1.52638 1.89648 1.78857 1.27483 1.04317 1.03152 0.99881 1.84734 1.43705 1.24248 0.99519 0.91340 0.91668 0.93877 0.93875 0.91670 0.91336 0.79146 0.93897 0.75920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.42 71.98 0.61 -4.21 16 2 C 0.26 10.05 1.11 2.86 0.00 10.05 16 3 C -0.13 -4.81 8.42 71.98 0.61 -4.20 16 4 N -0.73 -34.11 5.11 -306.73 -1.57 -35.68 16 5 C -0.23 -11.81 8.67 84.03 0.73 -11.08 16 6 H 0.09 4.13 6.69 -2.91 -0.02 4.11 16 7 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 8 N -0.97 -55.64 13.06 21.65 0.28 -55.36 16 9 Si 0.97 43.69 29.55 68.60 2.03 45.72 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 13 C 0.05 1.77 5.85 88.52 0.52 2.29 16 14 N -0.46 -15.30 10.32 -179.39 -1.85 -17.15 16 15 C -0.05 -1.30 6.20 41.52 0.26 -1.04 16 16 C 0.56 14.04 3.49 71.24 0.25 14.29 16 17 F -0.17 -4.33 17.30 44.97 0.78 -3.55 16 18 F -0.17 -4.74 17.16 44.97 0.77 -3.97 16 19 F -0.16 -3.53 16.82 44.97 0.76 -2.78 16 20 C -0.21 -4.99 10.69 66.78 0.71 -4.28 16 21 S 0.22 6.71 21.27 -56.49 -1.20 5.51 16 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.06 2.35 7.27 -2.39 -0.02 2.34 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 2.35 7.27 -2.39 -0.02 2.33 16 27 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.37 18.26 5.95 -92.71 -0.55 17.71 16 29 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.22 3.51 8.00 -2.91 -0.02 3.49 16 Total: -1.00 -58.36 286.32 4.79 -53.57 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.64 Total: 15.00 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.15 Total: -1.31 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -3.14 Total: -108.19 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 2.31 Total: -10.29 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 6.71 SS G_CDS: -1.20 Total: 5.51 kcal Total: -58.36 4.79 -53.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309393183.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.459 kcal (2) G-P(sol) polarization free energy of solvation -58.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds