Wall clock time and date at job start Tue Mar 31 2020 01:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46828 * 2 1 4 4 C 1.50694 * 109.47128 * 120.00144 * 2 1 3 5 5 H 1.07995 * 119.99960 * 119.99807 * 4 2 1 6 6 C 1.37880 * 120.00143 * 300.00572 * 4 2 1 7 7 N 1.31516 * 119.99963 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99689 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46635 * 90.00721 * 8 6 4 10 10 H 1.48499 * 109.46935 * 210.00601 * 8 6 4 11 11 H 1.48494 * 109.47389 * 330.00833 * 8 6 4 12 12 N 1.46901 * 109.46776 * 240.00154 * 2 1 3 13 13 C 1.46904 * 110.99779 * 85.00476 * 12 2 1 14 14 C 1.50703 * 109.46783 * 179.97438 * 13 12 2 15 15 N 1.29034 * 124.91509 * 89.99886 * 14 13 12 16 16 C 1.31774 * 117.12480 * 179.97438 * 15 14 13 17 17 C 1.50701 * 122.75190 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.46996 * 5.02137 * 17 16 15 19 19 F 1.39891 * 109.47388 * 125.02265 * 17 16 15 20 20 F 1.39901 * 109.47092 * 245.02690 * 17 16 15 21 21 C 1.33641 * 114.50001 * 0.02562 * 16 15 14 22 22 S 1.70974 * 124.91905 * 269.99484 * 14 13 12 23 23 H 1.09007 * 109.46962 * 59.99751 * 1 2 3 24 24 H 1.09001 * 109.47023 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47003 * 300.00043 * 1 2 3 26 26 H 0.96999 * 119.99504 * 179.97438 * 7 6 4 27 27 H 1.00896 * 111.00540 * 321.04610 * 12 2 1 28 28 H 1.08997 * 109.47356 * 59.99754 * 13 12 2 29 29 H 1.08999 * 109.46908 * 299.99408 * 13 12 2 30 30 H 1.07998 * 126.03899 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8021 0.8741 2.6993 10 1 0.9770 1.9952 3.9070 11 1 0.8488 2.1771 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5885 -0.5214 -3.5558 15 7 1.8428 -1.1419 -4.4066 16 6 2.4488 -1.7429 -5.4106 17 6 1.7023 -2.5039 -6.4758 18 9 0.3255 -2.3571 -6.2754 19 9 2.0463 -2.0018 -7.7354 20 9 2.0418 -3.8592 -6.4053 21 6 3.7799 -1.6233 -5.4061 22 16 4.2336 -0.6656 -3.9985 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.9039 -0.5276 4.4375 27 1 1.4496 -1.4979 -1.4101 28 1 2.7589 1.0463 -2.1182 29 1 1.0871 0.6164 -2.5525 30 1 4.4577 -2.0394 -6.1367 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309414066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:21 Heat of formation + Delta-G solvation = -94.193536 kcal Electronic energy + Delta-G solvation = -19259.332745 eV Core-core repulsion = 15574.122417 eV Total energy + Delta-G solvation = -3685.210328 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.28767 -47.83843 -47.72235 -40.08166 -36.55168 -33.04144 -31.61529 -29.56769 -27.12726 -26.12157 -25.07144 -22.69513 -20.42305 -20.15752 -19.28468 -18.69467 -18.31297 -16.95720 -16.71471 -15.48684 -15.15769 -14.81016 -14.72542 -14.50216 -14.38149 -14.20815 -13.91004 -13.89153 -13.68806 -13.14836 -12.96595 -12.75543 -12.36135 -12.05029 -11.70199 -11.57764 -11.09357 -10.63821 -10.18917 -9.92166 -9.75494 -9.58527 -9.29586 -9.23483 -8.62563 -7.67883 -6.09771 -4.08347 0.31650 1.00153 1.41146 2.19482 2.44233 3.22515 3.30754 3.34992 3.38882 3.88718 4.21606 4.29560 4.35258 4.80801 4.92263 5.06064 5.20399 5.33249 5.66882 5.78521 6.13406 6.21880 6.41419 6.61539 7.01134 7.31901 7.56075 7.73228 8.07912 8.59663 9.00920 9.51583 11.03523 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.031240 B = 0.003992 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.076508 B = 7011.807675 C = 7313.023074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.185 3.815 3 H 0.037 0.963 4 C -0.501 4.501 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.665 5.665 13 C 0.126 3.874 14 C 0.073 3.927 15 N -0.452 5.452 16 C -0.021 4.021 17 C 0.546 3.454 18 F -0.162 7.162 19 F -0.174 7.174 20 F -0.171 7.171 21 C -0.226 4.226 22 S 0.219 5.781 23 H 0.028 0.972 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.264 0.736 27 H 0.340 0.660 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 0.615 -20.126 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.076 3.924 3 H 0.055 0.945 4 C -0.539 4.539 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.297 5.297 13 C -0.007 4.007 14 C -0.206 4.206 15 N -0.166 5.166 16 C -0.157 4.157 17 C 0.489 3.511 18 F -0.144 7.144 19 F -0.155 7.155 20 F -0.153 7.153 21 C -0.368 4.368 22 S 0.477 5.523 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.712 1.076 -19.235 19.620 hybrid contribution -2.225 0.196 -0.821 2.380 sum 1.487 1.272 -20.057 20.152 Atomic orbital electron populations 1.22870 1.01099 1.01259 0.99111 1.19685 0.88900 0.95174 0.88623 0.94472 1.20909 1.31553 1.13944 0.87542 0.89934 1.24926 0.95889 0.96625 0.95811 1.69877 1.45645 1.40269 0.97889 0.86897 0.80657 0.83827 0.76961 1.20699 1.22356 1.19446 1.60787 1.58638 1.08599 1.01637 1.20646 1.00410 0.94272 0.85372 1.27274 0.93243 1.00342 0.99753 1.65877 1.38403 1.09906 1.02393 1.19855 0.91042 1.06282 0.98537 1.17267 0.77307 0.76920 0.79618 1.93236 1.30893 1.95396 1.94825 1.93212 1.92107 1.87327 1.42845 1.93234 1.92175 1.33562 1.96285 1.26968 0.98386 1.06698 1.04711 1.84240 1.09824 1.43613 1.14673 0.95259 0.92494 0.93427 0.92579 0.84243 0.88731 0.92253 0.79577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.83 8.64 37.16 0.32 -3.51 16 2 C 0.18 4.11 2.17 -68.86 -0.15 3.96 16 3 H 0.04 0.84 6.86 -51.93 -0.36 0.48 16 4 C -0.50 -13.61 9.42 -34.44 -0.32 -13.94 16 5 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 8 Si 0.89 21.22 24.37 -169.99 -4.14 17.08 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 10 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.27 -6.09 6.53 56.52 0.37 -5.72 16 12 N -0.67 -12.71 6.22 -109.22 -0.68 -13.39 16 13 C 0.13 1.93 6.06 -4.97 -0.03 1.90 16 14 C 0.07 1.03 6.90 -13.45 -0.09 0.94 16 15 N -0.45 -6.83 10.14 -8.06 -0.08 -6.91 16 16 C -0.02 -0.28 6.16 -84.23 -0.52 -0.80 16 17 C 0.55 6.79 3.39 36.01 0.12 6.91 16 18 F -0.16 -2.27 17.01 2.25 0.04 -2.23 16 19 F -0.17 -1.96 17.22 2.25 0.04 -1.92 16 20 F -0.17 -2.09 17.30 2.25 0.04 -2.05 16 21 C -0.23 -2.39 11.05 29.12 0.32 -2.06 16 22 S 0.22 2.45 23.18 -107.50 -2.49 -0.05 16 23 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 24 H 0.06 1.17 8.13 -51.93 -0.42 0.74 16 25 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.34 6.48 8.46 -39.29 -0.33 6.15 16 28 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 29 H 0.06 0.90 7.44 -51.93 -0.39 0.52 16 30 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 283.23 15.07 4.27 4.27 Total: -1.00 -29.71 283.23 -5.18 -34.90 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -2.50 Total: 1.23 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.45 Total: -4.75 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.01 Total: -46.48 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.12 Total: -6.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.49 Total: -0.05 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.71 -5.18 -34.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309414066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.297 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds