Wall clock time and date at job start Tue Mar 31 2020 01:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46828 * 2 1 4 4 C 1.50694 * 109.47128 * 120.00144 * 2 1 3 5 5 H 1.07995 * 119.99960 * 119.99807 * 4 2 1 6 6 C 1.37880 * 120.00143 * 300.00572 * 4 2 1 7 7 N 1.31516 * 119.99963 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99689 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.46635 * 90.00721 * 8 6 4 10 10 H 1.48499 * 109.46935 * 210.00601 * 8 6 4 11 11 H 1.48494 * 109.47389 * 330.00833 * 8 6 4 12 12 N 1.46901 * 109.46776 * 240.00154 * 2 1 3 13 13 C 1.46904 * 110.99779 * 85.00476 * 12 2 1 14 14 C 1.50703 * 109.46783 * 179.97438 * 13 12 2 15 15 N 1.29034 * 124.91509 * 89.99886 * 14 13 12 16 16 C 1.31774 * 117.12480 * 179.97438 * 15 14 13 17 17 C 1.50701 * 122.75190 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.46996 * 5.02137 * 17 16 15 19 19 F 1.39891 * 109.47388 * 125.02265 * 17 16 15 20 20 F 1.39901 * 109.47092 * 245.02690 * 17 16 15 21 21 C 1.33641 * 114.50001 * 0.02562 * 16 15 14 22 22 S 1.70974 * 124.91905 * 269.99484 * 14 13 12 23 23 H 1.09007 * 109.46962 * 59.99751 * 1 2 3 24 24 H 1.09001 * 109.47023 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47003 * 300.00043 * 1 2 3 26 26 H 0.96999 * 119.99504 * 179.97438 * 7 6 4 27 27 H 1.00896 * 111.00540 * 321.04610 * 12 2 1 28 28 H 1.08997 * 109.47356 * 59.99754 * 13 12 2 29 29 H 1.08999 * 109.46908 * 299.99408 * 13 12 2 30 30 H 1.07998 * 126.03899 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8021 0.8741 2.6993 10 1 0.9770 1.9952 3.9070 11 1 0.8488 2.1771 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5885 -0.5214 -3.5558 15 7 1.8428 -1.1419 -4.4066 16 6 2.4488 -1.7429 -5.4106 17 6 1.7023 -2.5039 -6.4758 18 9 0.3255 -2.3571 -6.2754 19 9 2.0463 -2.0018 -7.7354 20 9 2.0418 -3.8592 -6.4053 21 6 3.7799 -1.6233 -5.4061 22 16 4.2336 -0.6656 -3.9985 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.9039 -0.5276 4.4375 27 1 1.4496 -1.4979 -1.4101 28 1 2.7589 1.0463 -2.1182 29 1 1.0871 0.6164 -2.5525 30 1 4.4577 -2.0394 -6.1367 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309414066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:20 Heat of formation + Delta-G solvation = -115.858573 kcal Electronic energy + Delta-G solvation = -19260.272211 eV Core-core repulsion = 15574.122417 eV Total energy + Delta-G solvation = -3686.149794 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.24446 -48.76432 -48.72229 -41.07832 -38.11172 -34.78421 -33.11751 -30.98217 -28.06795 -27.42777 -27.00589 -23.79648 -22.16268 -21.18233 -20.28670 -19.64229 -19.31190 -18.75675 -17.79625 -17.06719 -16.49507 -16.03982 -15.90362 -15.61769 -15.48421 -15.16256 -15.08803 -14.88366 -14.87344 -14.71605 -14.29551 -14.09423 -13.86642 -13.61720 -13.10657 -12.82007 -12.57780 -12.47533 -11.99837 -11.47493 -11.24389 -10.90280 -10.75077 -10.63876 -10.24829 -9.19038 -8.24579 -6.27743 -0.61621 0.10628 0.45063 1.18257 1.34361 1.38552 1.48990 1.49837 2.34860 2.42505 2.93463 3.09868 3.22374 3.28512 3.61846 3.95189 4.05053 4.27367 4.45777 4.49646 4.56861 4.69778 4.71477 4.96487 5.36379 5.65949 5.92975 6.33126 6.54163 6.61510 6.79889 7.36979 8.92664 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.031240 B = 0.003992 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.076508 B = 7011.807675 C = 7313.023074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.189 3.811 3 H 0.044 0.956 4 C -0.504 4.504 5 H 0.036 0.964 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.300 1.300 11 H -0.242 1.242 12 N -0.675 5.675 13 C 0.129 3.871 14 C 0.040 3.960 15 N -0.474 5.474 16 C -0.050 4.050 17 C 0.551 3.449 18 F -0.175 7.175 19 F -0.166 7.166 20 F -0.171 7.171 21 C -0.204 4.204 22 S 0.267 5.733 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.337 0.663 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 1.968 -22.088 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.080 3.920 3 H 0.062 0.938 4 C -0.542 4.542 5 H 0.054 0.946 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.228 1.228 11 H -0.166 1.166 12 N -0.306 5.306 13 C -0.003 4.003 14 C -0.238 4.238 15 N -0.189 5.189 16 C -0.185 4.185 17 C 0.493 3.507 18 F -0.156 7.156 19 F -0.147 7.147 20 F -0.152 7.152 21 C -0.345 4.345 22 S 0.524 5.476 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.801 2.432 -21.238 21.712 hybrid contribution -2.110 -0.336 -0.316 2.160 sum 1.691 2.096 -21.555 21.722 Atomic orbital electron populations 1.22752 0.99553 1.01374 1.00186 1.19453 0.89941 0.94708 0.87889 0.93833 1.21207 1.30389 1.12622 0.90017 0.94551 1.25795 0.97475 1.00075 0.95329 1.70045 1.47931 1.42635 0.98582 0.85834 0.78796 0.80037 0.77529 1.19807 1.22828 1.16569 1.60582 1.58478 1.09216 1.02369 1.20609 1.01246 0.93917 0.84482 1.27001 0.95148 1.01736 0.99896 1.65797 1.39882 1.10200 1.03035 1.19955 0.92050 1.07622 0.98846 1.17204 0.76716 0.76904 0.79849 1.93207 1.31974 1.95474 1.94946 1.93224 1.91958 1.87221 1.42335 1.93233 1.92093 1.33579 1.96319 1.27437 0.97993 1.04594 1.04510 1.84074 1.06960 1.42548 1.13977 0.92008 0.93038 0.94286 0.92621 0.84527 0.87406 0.91893 0.76084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.07 8.64 71.98 0.62 -6.45 16 2 C 0.19 8.20 2.17 44.17 0.10 8.29 16 3 H 0.04 1.85 6.86 -2.39 -0.02 1.83 16 4 C -0.50 -27.85 9.42 25.60 0.24 -27.61 16 5 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 6 C 0.01 0.57 5.45 84.66 0.46 1.03 16 7 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 8 Si 0.95 43.25 24.37 68.60 1.67 44.92 16 9 H -0.27 -11.92 6.87 99.48 0.68 -11.24 16 10 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 11 H -0.24 -9.86 6.53 99.48 0.65 -9.21 16 12 N -0.68 -25.27 6.22 -499.46 -3.11 -28.38 16 13 C 0.13 3.75 6.06 85.56 0.52 4.27 16 14 C 0.04 1.07 6.90 88.52 0.61 1.68 16 15 N -0.47 -13.66 10.14 -179.40 -1.82 -15.48 16 16 C -0.05 -1.21 6.16 41.52 0.26 -0.95 16 17 C 0.55 12.84 3.39 71.24 0.24 13.08 16 18 F -0.17 -4.75 17.01 44.97 0.76 -3.98 16 19 F -0.17 -3.42 17.22 44.97 0.77 -2.65 16 20 F -0.17 -3.91 17.30 44.97 0.78 -3.13 16 21 C -0.20 -3.67 11.05 66.78 0.74 -2.93 16 22 S 0.27 5.26 23.18 -56.49 -1.31 3.95 16 23 H 0.06 2.02 7.45 -2.38 -0.02 2.00 16 24 H 0.05 2.04 8.13 -2.39 -0.02 2.03 16 25 H 0.04 1.59 3.27 -2.39 -0.01 1.59 16 26 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 27 H 0.34 12.79 8.46 -89.70 -0.76 12.03 16 28 H 0.11 2.78 8.05 -2.39 -0.02 2.76 16 29 H 0.06 1.77 7.44 -2.39 -0.02 1.75 16 30 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -65.44 283.23 2.20 -63.23 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.36 Total: 9.54 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 3.78 Total: -9.58 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -4.63 Total: -102.30 kcal Atomic # 9 Polarization: -12.08 SS G_CDS: 2.32 Total: -9.76 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.67 Total: 44.92 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.31 Total: 3.95 kcal Total: -65.44 2.20 -63.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309414066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.624 kcal (2) G-P(sol) polarization free energy of solvation -65.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds