Wall clock time and date at job start Tue Mar 31 2020 01:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46687 * 2 1 4 4 C 1.50697 * 109.47101 * 239.99712 * 2 1 3 5 5 H 1.07999 * 119.99995 * 274.99724 * 4 2 1 6 6 C 1.37875 * 119.99903 * 94.99573 * 4 2 1 7 7 N 1.31515 * 119.99834 * 184.91086 * 6 4 2 8 8 Si 1.86794 * 120.00115 * 4.91280 * 6 4 2 9 9 H 1.48503 * 109.47131 * 84.83371 * 8 6 4 10 10 H 1.48503 * 109.47177 * 204.82731 * 8 6 4 11 11 H 1.48496 * 109.47173 * 324.83294 * 8 6 4 12 12 N 1.46897 * 109.46781 * 119.99661 * 2 1 3 13 13 C 1.46901 * 111.00061 * 274.99860 * 12 2 1 14 14 C 1.50704 * 109.47371 * 180.02562 * 13 12 2 15 15 N 1.29024 * 124.91306 * 89.99878 * 14 13 12 16 16 C 1.31787 * 117.12395 * 180.02562 * 15 14 13 17 17 C 1.50700 * 122.75049 * 179.97438 * 16 15 14 18 18 F 1.39894 * 109.47356 * 5.02302 * 17 16 15 19 19 F 1.39893 * 109.47168 * 125.02462 * 17 16 15 20 20 F 1.39900 * 109.46616 * 245.02244 * 17 16 15 21 21 C 1.33641 * 114.49434 * 0.23124 * 16 15 14 22 22 S 1.70972 * 124.91685 * 270.00193 * 14 13 12 23 23 H 1.08998 * 109.47502 * 295.04582 * 1 2 3 24 24 H 1.09005 * 109.47416 * 55.04755 * 1 2 3 25 25 H 1.09005 * 109.47087 * 175.04753 * 1 2 3 26 26 H 0.97003 * 120.00182 * 180.02562 * 7 6 4 27 27 H 1.00897 * 111.00499 * 38.95584 * 12 2 1 28 28 H 1.08997 * 109.47108 * 60.00461 * 13 12 2 29 29 H 1.09000 * 109.47223 * 300.00345 * 13 12 2 30 30 H 1.08003 * 126.03402 * 179.76530 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7059 -0.6133 -3.4621 8 14 2.3132 1.8789 -2.3176 9 1 3.5988 2.3949 -1.7824 10 1 2.1055 2.3988 -3.6930 11 1 1.1983 2.3273 -1.4452 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5884 -0.5213 3.5558 15 7 3.8299 -0.6301 3.8898 16 6 4.1006 -1.3183 4.9806 17 6 5.5050 -1.5255 5.4863 18 9 6.3979 -0.7936 4.6963 19 9 5.5918 -1.0907 6.8131 20 9 5.8290 -2.8848 5.4189 21 6 3.0279 -1.8219 5.5985 22 16 1.6004 -1.3434 4.6833 23 1 -0.3634 0.4350 0.9310 24 1 -0.3634 0.5888 -0.8423 25 1 -0.3633 -1.0239 -0.0887 26 1 2.9369 -0.1051 -4.2554 27 1 1.4495 -1.4978 1.4101 28 1 1.0870 0.6164 2.5525 29 1 2.7588 1.0463 2.1182 30 1 3.0348 -2.4156 6.5007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309414068.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:23 Heat of formation + Delta-G solvation = -99.576064 kcal Electronic energy + Delta-G solvation = -19270.243815 eV Core-core repulsion = 15584.800083 eV Total energy + Delta-G solvation = -3685.443732 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.23626 -47.79460 -47.65522 -40.06189 -36.51264 -32.93973 -31.63797 -29.50164 -27.10791 -26.02092 -25.20060 -22.66449 -20.41381 -20.06113 -19.22366 -18.64788 -18.25053 -17.12659 -16.82200 -15.47126 -15.24314 -14.68271 -14.48760 -14.43012 -14.15534 -13.93769 -13.86162 -13.82294 -13.66727 -13.57512 -12.90806 -12.53052 -12.25162 -12.15436 -11.72985 -11.42907 -11.10410 -10.76596 -10.29815 -9.87753 -9.79760 -9.69964 -9.34745 -9.24954 -8.56143 -7.60393 -6.09091 -4.07204 0.29215 0.94752 1.32142 2.24427 2.47456 3.26606 3.32821 3.35521 3.43652 3.92123 4.25940 4.31111 4.38577 4.79204 4.89395 4.97429 5.29944 5.42656 5.62060 5.84238 6.12701 6.24434 6.46285 6.65559 7.02061 7.39008 7.56465 7.78958 8.12390 8.58256 8.98609 9.52354 11.04308 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.004453 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.503093 B = 6286.274065 C = 6882.178365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.181 3.819 3 H 0.041 0.959 4 C -0.493 4.493 5 H 0.077 0.923 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.268 1.268 12 N -0.664 5.664 13 C 0.125 3.875 14 C 0.082 3.918 15 N -0.433 5.433 16 C -0.018 4.018 17 C 0.546 3.454 18 F -0.159 7.159 19 F -0.174 7.174 20 F -0.171 7.171 21 C -0.216 4.216 22 S 0.172 5.828 23 H 0.020 0.980 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.265 0.735 27 H 0.329 0.671 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 -0.507 20.633 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.074 3.926 3 H 0.059 0.941 4 C -0.532 4.532 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.702 3.298 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.193 1.193 12 N -0.295 5.295 13 C -0.008 4.008 14 C -0.198 4.198 15 N -0.146 5.146 16 C -0.153 4.153 17 C 0.489 3.511 18 F -0.140 7.140 19 F -0.155 7.155 20 F -0.152 7.152 21 C -0.358 4.358 22 S 0.429 5.571 23 H 0.039 0.961 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.147 0.853 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.647 -0.286 20.025 20.094 hybrid contribution 0.218 0.832 0.533 1.012 sum -1.428 0.546 20.558 20.614 Atomic orbital electron populations 1.22673 1.00619 1.01072 0.98847 1.19713 0.89593 0.94890 0.88435 0.94122 1.20792 1.43127 0.95750 0.93493 0.90474 1.24971 0.94563 0.98110 0.95373 1.69882 1.46119 1.35758 1.01726 0.86918 0.79013 0.86654 0.77186 1.19965 1.21437 1.19292 1.61032 1.58503 1.08351 1.01629 1.20718 0.99008 0.95255 0.85800 1.27367 0.90097 1.01154 1.01163 1.65841 1.19395 1.16649 1.12698 1.19978 0.94083 1.04747 0.96536 1.17245 0.84516 0.74286 0.75076 1.93253 1.69892 1.77071 1.73825 1.93211 1.96679 1.89610 1.36028 1.93234 1.93537 1.32374 1.96066 1.26847 0.95085 1.07326 1.06532 1.84097 1.10112 1.45501 1.17408 0.96099 0.92816 0.93010 0.92548 0.85331 0.93314 0.87991 0.79507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 9.16 37.16 0.34 -2.99 16 2 C 0.18 4.02 2.23 -68.87 -0.15 3.87 16 3 H 0.04 0.92 4.95 -51.93 -0.26 0.67 16 4 C -0.49 -13.48 9.19 -34.44 -0.32 -13.80 16 5 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 8 Si 0.87 21.02 26.99 -169.99 -4.59 16.44 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.01 6.82 56.52 0.39 -5.63 16 12 N -0.66 -12.91 6.22 -109.22 -0.68 -13.59 16 13 C 0.12 1.98 6.06 -4.97 -0.03 1.95 16 14 C 0.08 1.20 6.90 -13.46 -0.09 1.11 16 15 N -0.43 -7.07 10.14 -8.06 -0.08 -7.15 16 16 C -0.02 -0.25 6.16 -84.22 -0.52 -0.76 16 17 C 0.55 7.20 3.39 36.01 0.12 7.32 16 18 F -0.16 -2.42 17.01 2.25 0.04 -2.38 16 19 F -0.17 -2.04 17.22 2.25 0.04 -2.00 16 20 F -0.17 -2.20 17.30 2.25 0.04 -2.16 16 21 C -0.22 -2.30 11.05 29.12 0.32 -1.98 16 22 S 0.17 1.82 23.18 -107.50 -2.49 -0.67 16 23 H 0.02 0.33 7.35 -51.93 -0.38 -0.05 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.33 5.88 8.47 -39.29 -0.33 5.54 16 28 H 0.05 0.66 7.36 -51.93 -0.38 0.27 16 29 H 0.10 1.71 8.06 -51.93 -0.42 1.29 16 30 H 0.19 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 289.57 15.07 4.36 4.36 Total: -1.00 -30.61 289.57 -5.63 -36.24 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -2.61 Total: 0.59 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.43 Total: -3.34 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.01 Total: -47.06 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.12 Total: -6.54 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.59 Total: 16.44 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.49 Total: -0.67 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.61 -5.63 -36.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309414068.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.335 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds