Wall clock time and date at job start Tue Mar 31 2020 01:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46687 * 2 1 4 4 C 1.50697 * 109.47101 * 239.99712 * 2 1 3 5 5 H 1.07999 * 119.99995 * 274.99724 * 4 2 1 6 6 C 1.37875 * 119.99903 * 94.99573 * 4 2 1 7 7 N 1.31515 * 119.99834 * 184.91086 * 6 4 2 8 8 Si 1.86794 * 120.00115 * 4.91280 * 6 4 2 9 9 H 1.48503 * 109.47131 * 84.83371 * 8 6 4 10 10 H 1.48503 * 109.47177 * 204.82731 * 8 6 4 11 11 H 1.48496 * 109.47173 * 324.83294 * 8 6 4 12 12 N 1.46897 * 109.46781 * 119.99661 * 2 1 3 13 13 C 1.46901 * 111.00061 * 274.99860 * 12 2 1 14 14 C 1.50704 * 109.47371 * 180.02562 * 13 12 2 15 15 N 1.29024 * 124.91306 * 89.99878 * 14 13 12 16 16 C 1.31787 * 117.12395 * 180.02562 * 15 14 13 17 17 C 1.50700 * 122.75049 * 179.97438 * 16 15 14 18 18 F 1.39894 * 109.47356 * 5.02302 * 17 16 15 19 19 F 1.39893 * 109.47168 * 125.02462 * 17 16 15 20 20 F 1.39900 * 109.46616 * 245.02244 * 17 16 15 21 21 C 1.33641 * 114.49434 * 0.23124 * 16 15 14 22 22 S 1.70972 * 124.91685 * 270.00193 * 14 13 12 23 23 H 1.08998 * 109.47502 * 295.04582 * 1 2 3 24 24 H 1.09005 * 109.47416 * 55.04755 * 1 2 3 25 25 H 1.09005 * 109.47087 * 175.04753 * 1 2 3 26 26 H 0.97003 * 120.00182 * 180.02562 * 7 6 4 27 27 H 1.00897 * 111.00499 * 38.95584 * 12 2 1 28 28 H 1.08997 * 109.47108 * 60.00461 * 13 12 2 29 29 H 1.09000 * 109.47223 * 300.00345 * 13 12 2 30 30 H 1.08003 * 126.03402 * 179.76530 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7059 -0.6133 -3.4621 8 14 2.3132 1.8789 -2.3176 9 1 3.5988 2.3949 -1.7824 10 1 2.1055 2.3988 -3.6930 11 1 1.1983 2.3273 -1.4452 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5884 -0.5213 3.5558 15 7 3.8299 -0.6301 3.8898 16 6 4.1006 -1.3183 4.9806 17 6 5.5050 -1.5255 5.4863 18 9 6.3979 -0.7936 4.6963 19 9 5.5918 -1.0907 6.8131 20 9 5.8290 -2.8848 5.4189 21 6 3.0279 -1.8219 5.5985 22 16 1.6004 -1.3434 4.6833 23 1 -0.3634 0.4350 0.9310 24 1 -0.3634 0.5888 -0.8423 25 1 -0.3633 -1.0239 -0.0887 26 1 2.9369 -0.1051 -4.2554 27 1 1.4495 -1.4978 1.4101 28 1 1.0870 0.6164 2.5525 29 1 2.7588 1.0463 2.1182 30 1 3.0348 -2.4156 6.5007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309414068.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:22 Heat of formation + Delta-G solvation = -121.930605 kcal Electronic energy + Delta-G solvation = -19271.213180 eV Core-core repulsion = 15584.800083 eV Total energy + Delta-G solvation = -3686.413097 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.24903 -48.76858 -48.72740 -41.07334 -38.05720 -34.71437 -33.11424 -30.90062 -28.06331 -27.36314 -27.07717 -23.78565 -21.97299 -21.29895 -20.23850 -19.64973 -19.31601 -19.00793 -17.80870 -16.90659 -16.57637 -16.00354 -15.68309 -15.51915 -15.16680 -15.15200 -15.02228 -14.99216 -14.87821 -14.85653 -14.47243 -13.99368 -13.74263 -13.56428 -12.91690 -12.85604 -12.64008 -12.57645 -12.01501 -11.76201 -11.21507 -10.84739 -10.69856 -10.62810 -10.27478 -9.08294 -8.24640 -6.26941 -0.63407 0.07541 0.35919 1.21087 1.35933 1.39536 1.47126 1.49873 2.36993 2.43928 2.93005 3.05865 3.26363 3.29249 3.68833 3.96891 4.03522 4.26896 4.41121 4.58207 4.68453 4.73886 4.80194 5.07734 5.47533 5.68424 5.98875 6.42875 6.60703 6.67176 6.78681 7.36901 8.92948 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.004453 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.503093 B = 6286.274065 C = 6882.178365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.184 3.816 3 H 0.040 0.960 4 C -0.496 4.496 5 H 0.030 0.970 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.941 3.059 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.236 1.236 12 N -0.685 5.685 13 C 0.129 3.871 14 C 0.041 3.959 15 N -0.472 5.472 16 C -0.051 4.051 17 C 0.549 3.451 18 F -0.177 7.177 19 F -0.165 7.165 20 F -0.171 7.171 21 C -0.197 4.197 22 S 0.261 5.739 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.264 0.736 27 H 0.338 0.662 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 0.358 23.476 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.076 3.924 3 H 0.058 0.942 4 C -0.535 4.535 5 H 0.048 0.952 6 C -0.188 4.188 7 N -0.593 5.593 8 Si 0.765 3.235 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.159 1.159 12 N -0.317 5.317 13 C -0.003 4.003 14 C -0.237 4.237 15 N -0.187 5.187 16 C -0.186 4.186 17 C 0.491 3.509 18 F -0.158 7.158 19 F -0.146 7.146 20 F -0.152 7.152 21 C -0.339 4.339 22 S 0.518 5.482 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.156 0.844 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.563 0.578 22.902 23.185 hybrid contribution 0.789 0.396 -0.190 0.904 sum -2.773 0.974 22.712 22.901 Atomic orbital electron populations 1.22495 0.97915 1.01374 1.00650 1.19515 0.91424 0.94014 0.87457 0.94212 1.21139 1.42352 0.94008 0.96029 0.95160 1.25873 0.94555 1.03534 0.94879 1.70055 1.48672 1.37876 1.02723 0.85850 0.79883 0.80131 0.77640 1.20118 1.21464 1.15876 1.60627 1.59127 1.09443 1.02540 1.20610 1.00371 0.94236 0.85092 1.27081 0.90949 1.03260 1.02459 1.65752 1.21036 1.17720 1.14155 1.20003 0.94778 1.06633 0.97144 1.17253 0.84365 0.74056 0.75198 1.93211 1.70570 1.77554 1.74470 1.93222 1.96646 1.89513 1.35254 1.93229 1.93574 1.32324 1.96100 1.27408 0.94481 1.05216 1.06775 1.83740 1.07607 1.42572 1.14307 0.91964 0.93670 0.93132 0.92686 0.84418 0.90108 0.89638 0.75849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.91 9.16 71.98 0.66 -5.25 16 2 C 0.18 7.97 2.23 44.17 0.10 8.07 16 3 H 0.04 1.73 4.95 -2.39 -0.01 1.72 16 4 C -0.50 -27.84 9.19 25.60 0.24 -27.60 16 5 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 6 C 0.01 0.48 5.47 84.65 0.46 0.94 16 7 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 8 Si 0.94 43.49 26.99 68.60 1.85 45.34 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 11 H -0.24 -9.57 6.82 99.48 0.68 -8.90 16 12 N -0.69 -25.98 6.22 -499.47 -3.11 -29.08 16 13 C 0.13 3.83 6.06 85.56 0.52 4.35 16 14 C 0.04 1.11 6.90 88.52 0.61 1.73 16 15 N -0.47 -14.98 10.14 -179.40 -1.82 -16.80 16 16 C -0.05 -1.31 6.16 41.52 0.26 -1.05 16 17 C 0.55 13.93 3.39 71.24 0.24 14.17 16 18 F -0.18 -5.41 17.01 44.97 0.76 -4.65 16 19 F -0.17 -3.61 17.22 44.97 0.77 -2.84 16 20 F -0.17 -4.23 17.30 44.97 0.78 -3.45 16 21 C -0.20 -3.49 11.05 66.78 0.74 -2.75 16 22 S 0.26 4.49 23.18 -56.49 -1.31 3.18 16 23 H 0.06 1.72 7.35 -2.39 -0.02 1.70 16 24 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.34 11.61 8.47 -89.70 -0.76 10.85 16 28 H 0.08 1.85 7.36 -2.39 -0.02 1.83 16 29 H 0.09 2.78 8.06 -2.39 -0.02 2.76 16 30 H 0.22 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -70.01 289.57 2.46 -67.55 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.41 Total: 7.69 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 3.82 Total: -7.40 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -4.63 Total: -105.43 kcal Atomic # 9 Polarization: -13.25 SS G_CDS: 2.32 Total: -10.93 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.85 Total: 45.34 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.31 Total: 3.18 kcal Total: -70.01 2.46 -67.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309414068.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.382 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds