Wall clock time and date at job start Tue Mar 31 2020 00:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99904 * 2 1 4 4 H 1.48508 * 109.46782 * 239.99567 * 3 2 1 5 5 H 1.48501 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47191 * 119.99831 * 3 2 1 7 7 C 1.37876 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46759 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46932 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00314 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47280 * 179.97438 * 12 11 10 14 14 C 1.33644 * 126.03938 * 90.00130 * 13 12 11 15 15 N 1.31771 * 114.50041 * 180.02562 * 14 13 12 16 16 C 1.29028 * 117.12878 * 359.97438 * 15 14 13 17 17 C 1.50701 * 124.91855 * 180.02562 * 16 15 14 18 18 F 1.39896 * 109.46912 * 5.00165 * 17 16 15 19 19 F 1.39904 * 109.47073 * 124.99784 * 17 16 15 20 20 F 1.39900 * 109.46972 * 244.99973 * 17 16 15 21 21 S 1.70979 * 110.16576 * 359.97438 * 16 15 14 22 22 H 0.96999 * 120.00229 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46792 * 60.00526 * 9 7 2 24 24 H 1.09000 * 109.47331 * 300.00003 * 9 7 2 25 25 H 1.08992 * 109.46996 * 60.00108 * 10 9 7 26 26 H 1.09000 * 109.47143 * 300.00046 * 10 9 7 27 27 H 1.00905 * 110.99949 * 303.95492 * 11 10 9 28 28 H 1.08996 * 109.47307 * 59.99553 * 12 11 10 29 29 H 1.09005 * 109.46527 * 299.99761 * 12 11 10 30 30 H 1.08002 * 122.74545 * 359.72316 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5108 -4.9343 0.0012 12 6 2.4352 -6.0759 0.0030 13 6 1.6472 -7.3604 0.0030 14 6 1.2373 -8.0314 -1.0777 15 7 0.5613 -9.1314 -0.8142 16 6 0.3786 -9.4261 0.4286 17 6 -0.3657 -10.6379 0.9273 18 9 -0.7240 -11.4445 -0.1581 19 9 0.4552 -11.3641 1.7970 20 9 -1.5190 -10.2301 1.6061 21 16 1.1043 -8.2436 1.4277 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8712 -3.6039 0.8922 26 1 2.8727 -3.6047 -0.8877 27 1 0.8735 -4.9842 0.7819 28 1 3.0619 -6.0346 0.8938 29 1 3.0645 -6.0352 -0.8861 30 1 1.4391 -7.6966 -2.0845 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309563793.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:38 Heat of formation + Delta-G solvation = -108.957756 kcal Electronic energy + Delta-G solvation = -18522.750884 eV Core-core repulsion = 14836.900332 eV Total energy + Delta-G solvation = -3685.850552 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.50658 -48.06020 -47.96428 -40.14287 -36.42621 -33.35816 -31.89587 -29.73711 -27.85147 -25.17970 -24.08655 -23.04660 -20.92268 -20.55150 -19.43329 -18.92040 -17.98001 -17.49924 -16.41704 -15.59164 -15.22322 -14.93513 -14.80701 -14.64075 -14.53205 -14.42350 -14.13696 -14.11766 -13.96160 -13.78340 -13.09395 -12.81177 -12.33109 -12.12011 -11.60207 -11.15653 -10.98333 -10.65479 -10.26515 -10.10599 -9.84684 -9.54204 -9.40356 -9.21847 -8.42429 -8.11637 -6.06168 -4.09782 0.00971 0.65249 1.18496 2.07523 2.31626 3.11902 3.29133 3.34170 3.35836 3.77914 3.93658 4.31189 4.40658 4.53563 4.71439 4.91170 5.29858 5.48493 5.50302 5.74489 6.13584 6.18662 6.81145 7.11052 7.19893 7.54262 7.63851 7.77885 7.97256 8.33341 8.96980 9.54549 11.05093 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.044423 B = 0.002850 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.158801 B = 9821.744499 C = 9963.687951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.685 5.685 12 C 0.127 3.873 13 C -0.172 4.172 14 C 0.045 3.955 15 N -0.411 5.411 16 C -0.095 4.095 17 C 0.555 3.445 18 F -0.155 7.155 19 F -0.166 7.166 20 F -0.164 7.164 21 S 0.219 5.781 22 H 0.262 0.738 23 H 0.027 0.973 24 H 0.014 0.986 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.339 0.661 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 -21.020 3.127 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.317 5.317 12 C -0.005 4.005 13 C -0.295 4.295 14 C -0.108 4.108 15 N -0.126 5.126 16 C -0.371 4.371 17 C 0.497 3.503 18 F -0.137 7.137 19 F -0.148 7.148 20 F -0.145 7.145 21 S 0.473 5.527 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.994 -21.195 3.148 21.520 hybrid contribution 0.723 1.039 0.045 1.267 sum 2.717 -20.155 3.194 20.587 Atomic orbital electron populations 1.69957 1.06060 1.26863 1.50209 1.25004 0.94854 0.99281 0.95154 0.86629 0.79560 0.83013 0.78620 1.20175 1.21226 1.20256 1.21101 0.92950 0.90898 1.51479 0.92721 1.19071 0.93969 0.90257 0.97908 1.22244 0.97180 0.87682 0.99126 1.60728 1.19197 1.01569 1.50177 1.20459 0.92827 0.84718 1.02508 1.26597 1.05455 1.02830 0.94598 1.21798 0.97881 0.89961 1.01165 1.66013 1.12525 1.16895 1.17204 1.26557 1.11624 1.03651 0.95316 1.16929 0.76808 0.81003 0.75532 1.93254 1.91897 1.74218 1.54291 1.93254 1.72378 1.78857 1.70292 1.93272 1.50473 1.90360 1.80421 1.84071 1.45583 1.14033 1.09053 0.92822 0.95492 0.96732 0.96152 0.91804 0.84351 0.93671 0.88206 0.79091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.63 5.23 -27.88 -0.15 0.49 16 10 C 0.07 1.25 5.62 -3.82 -0.02 1.23 16 11 N -0.69 -10.85 6.49 -115.06 -0.75 -11.59 16 12 C 0.13 1.51 6.22 -4.98 -0.03 1.48 16 13 C -0.17 -1.96 6.11 -35.92 -0.22 -2.18 16 14 C 0.04 0.52 11.25 -19.19 -0.22 0.31 16 15 N -0.41 -5.34 10.25 -11.86 -0.12 -5.46 16 16 C -0.10 -1.13 6.72 -13.46 -0.09 -1.22 16 17 C 0.56 6.14 3.53 36.01 0.13 6.27 16 18 F -0.16 -1.84 17.09 2.25 0.04 -1.80 16 19 F -0.17 -1.69 17.30 2.25 0.04 -1.65 16 20 F -0.16 -1.80 17.30 2.25 0.04 -1.76 16 21 S 0.22 2.27 23.18 -107.50 -2.49 -0.22 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.34 5.30 8.72 -39.29 -0.34 4.95 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 296.69 15.07 4.47 4.47 Total: -1.00 -29.59 296.69 -6.91 -36.50 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -2.84 Total: -2.18 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.01 Total: -6.79 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.13 Total: -42.69 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.12 Total: -5.22 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.49 Total: -0.22 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.59 -6.91 -36.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309563793.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.458 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds