Wall clock time and date at job start Tue Mar 31 2020 01:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47332 * 2 1 4 4 C 1.47203 * 109.47184 * 240.00391 * 2 1 3 5 5 N 2.60805 * 109.47035 * 240.00303 * 2 1 3 6 6 S 1.81401 * 109.47121 * 120.00326 * 2 1 3 7 7 O 1.42102 * 110.54122 * 188.36129 * 6 2 1 8 8 O 1.42097 * 110.54080 * 51.61251 * 6 2 1 9 9 N 1.65596 * 104.45040 * 299.98544 * 6 2 1 10 10 C 1.39682 * 120.00017 * 294.22979 * 9 6 2 11 11 C 1.39331 * 119.94881 * 284.94979 * 10 9 6 12 12 C 1.38480 * 120.41929 * 180.25685 * 11 10 9 13 13 C 1.37693 * 120.32809 * 359.44792 * 12 11 10 14 14 C 1.40745 * 119.89148 * 0.27751 * 13 12 11 15 15 C 1.41405 * 120.20900 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99991 * 208.69994 * 15 14 13 17 17 C 1.39926 * 120.00129 * 28.69351 * 15 14 13 18 18 N 1.30831 * 120.00126 * 12.03897 * 17 15 14 19 19 Si 1.86798 * 120.00349 * 192.04223 * 17 15 14 20 20 H 1.48499 * 109.47301 * 59.99874 * 19 17 15 21 21 H 1.48502 * 109.47283 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46960 * 299.99919 * 19 17 15 23 23 C 1.38284 * 119.95091 * 104.66135 * 10 9 6 24 24 H 1.08998 * 109.47189 * 64.56808 * 1 2 3 25 25 H 1.09001 * 109.47566 * 184.56620 * 1 2 3 26 26 H 1.08997 * 109.47444 * 304.57097 * 1 2 3 27 27 H 0.97003 * 120.00036 * 114.22444 * 9 6 2 28 28 H 1.07995 * 119.79484 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.83655 * 179.72211 * 12 11 10 30 30 H 1.08001 * 120.05477 * 180.29452 * 13 12 11 31 31 H 0.96996 * 120.00350 * 180.02562 * 18 17 15 32 32 H 1.08000 * 120.16237 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1295 6 16 2.1346 -0.8552 1.4811 7 8 3.5421 -0.7033 1.6049 8 8 1.5218 -2.1312 1.6051 9 7 1.5168 0.0192 2.7444 10 6 1.9384 1.3339 2.9560 11 6 3.1961 1.5817 3.5020 12 6 3.6218 2.8811 3.7209 13 6 2.8106 3.9435 3.3906 14 6 1.5398 3.7089 2.8330 15 6 0.7010 4.7949 2.4918 16 1 -0.3723 4.6756 2.5125 17 6 1.2613 6.0242 2.1275 18 7 2.5418 6.1098 1.8732 19 14 0.1812 7.5433 2.0042 20 1 -0.4472 7.8121 3.3226 21 1 1.0100 8.7089 1.6046 22 1 -0.8778 7.3165 0.9881 23 6 1.1093 2.3877 2.6179 24 1 -0.3633 0.4413 -0.9281 25 1 -0.3634 -1.0244 0.0818 26 1 -0.3634 0.5831 0.8462 27 1 0.8620 -0.3816 3.3373 28 1 3.8413 0.7551 3.7604 29 1 4.5968 3.0623 4.1488 30 1 3.1490 4.9553 3.5589 31 1 2.9304 6.9620 1.6210 32 1 0.1363 2.1970 2.1899 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313464508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:21 Heat of formation + Delta-G solvation = -26.394240 kcal Electronic energy + Delta-G solvation = -19401.710056 eV Core-core repulsion = 16261.296467 eV Total energy + Delta-G solvation = -3140.413589 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.15951 -37.22609 -36.99713 -35.93106 -34.89910 -33.37957 -32.96125 -30.03826 -27.90048 -25.41430 -25.12718 -21.28975 -20.97768 -19.89170 -18.32181 -17.79285 -17.61065 -16.38038 -15.95012 -15.45003 -14.93480 -14.77881 -14.37267 -13.82312 -13.48471 -13.44252 -13.17784 -12.89421 -12.60393 -12.29983 -12.09945 -12.03394 -11.93420 -11.81608 -11.71283 -11.35426 -11.22891 -11.01599 -10.68674 -10.56458 -10.15197 -9.94399 -9.34025 -9.21575 -7.70885 -7.50564 -6.87124 -4.56039 0.08077 2.45688 2.52937 2.54056 2.65048 2.76576 2.99685 3.01167 3.08270 3.33830 3.82882 3.86689 4.17764 4.45813 4.68496 4.91486 5.37172 5.39987 5.49927 5.85022 5.88002 6.16137 6.34241 6.71821 6.83090 6.96472 6.99700 7.10231 7.18928 7.47133 7.63973 7.82393 7.85563 8.07130 8.42857 8.71381 8.73561 10.07783 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.005489 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.348301 B = 5099.815762 C = 5668.396084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.504 4.504 3 H 0.184 0.816 4 C 0.218 3.782 5 N -0.398 5.398 6 S 2.621 3.379 7 O -0.929 6.929 8 O -0.953 6.953 9 N -1.043 6.043 10 C 0.119 3.881 11 C -0.207 4.207 12 C -0.104 4.104 13 C -0.142 4.142 14 C 0.111 3.889 15 C -0.464 4.464 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.799 5.799 19 Si 0.910 3.090 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.216 4.216 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.418 0.582 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.283 0.717 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 -4.736 0.405 6.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.611 4.611 3 H 0.201 0.799 4 C -0.101 4.101 5 N -0.075 5.075 6 S 2.708 3.292 7 O -0.918 6.918 8 O -0.942 6.942 9 N -0.800 5.800 10 C 0.026 3.974 11 C -0.229 4.229 12 C -0.123 4.123 13 C -0.162 4.162 14 C 0.108 3.892 15 C -0.494 4.494 16 H 0.097 0.903 17 C -0.143 4.143 18 N -0.425 5.425 19 Si 0.735 3.265 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.239 4.239 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.256 0.744 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.141 0.859 31 H 0.094 0.906 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.862 -6.099 -1.187 6.841 hybrid contribution -1.141 1.528 0.065 1.909 sum -4.003 -4.571 -1.122 6.179 Atomic orbital electron populations 1.21631 0.86794 1.04681 1.06334 1.28477 1.08567 1.14527 1.09560 0.79903 1.27527 0.94012 0.94037 0.94532 1.81231 1.07917 1.08945 1.09404 1.05250 0.75143 0.73739 0.75027 1.93642 1.28478 1.85771 1.83944 1.93585 1.78354 1.37367 1.84938 1.52779 1.59654 1.24363 1.43194 1.17035 0.95052 0.80839 1.04487 1.20743 0.96739 0.96591 1.08826 1.20689 0.98482 0.92574 1.00592 1.21559 0.95817 0.98287 1.00502 1.17486 0.92274 0.91126 0.88357 1.19499 0.94597 0.94440 1.40835 0.90309 1.25877 0.95290 1.00438 0.92664 1.69755 1.12377 1.27418 1.32918 0.86328 0.80420 0.79979 0.79781 1.18833 1.20348 1.19046 1.21241 1.00278 0.92223 1.10169 0.89663 0.90235 0.88373 0.74372 0.87922 0.88498 0.85946 0.90647 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.02 37.16 0.34 -1.05 16 2 C -0.50 -6.51 3.29 -29.52 -0.10 -6.60 16 3 H 0.18 2.27 8.14 -51.93 -0.42 1.85 16 4 C 0.22 3.24 14.65 -20.76 -0.30 2.93 16 5 N -0.40 -6.59 18.54 42.15 0.78 -5.81 16 6 S 2.62 39.35 4.83 -107.50 -0.52 38.83 16 7 O -0.93 -17.24 16.85 -57.54 -0.97 -18.21 16 8 O -0.95 -15.24 17.84 -57.54 -1.03 -16.27 16 9 N -1.04 -15.13 5.40 32.37 0.17 -14.96 16 10 C 0.12 2.17 5.72 -83.86 -0.48 1.69 16 11 C -0.21 -4.14 9.19 -39.09 -0.36 -4.50 16 12 C -0.10 -2.18 10.02 -39.69 -0.40 -2.58 16 13 C -0.14 -3.24 8.66 -38.83 -0.34 -3.58 16 14 C 0.11 2.53 5.54 -106.85 -0.59 1.94 16 15 C -0.46 -10.75 9.06 -37.75 -0.34 -11.09 16 16 H 0.08 1.73 7.87 -52.48 -0.41 1.32 16 17 C 0.07 1.69 5.23 -17.35 -0.09 1.60 16 18 N -0.80 -18.85 10.90 55.55 0.61 -18.24 16 19 Si 0.91 17.09 29.58 -169.99 -5.03 12.06 16 20 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 21 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 C -0.22 -4.23 9.71 -38.67 -0.38 -4.60 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.73 7.96 -51.93 -0.41 0.31 16 26 H 0.10 0.91 7.16 -51.93 -0.37 0.54 16 27 H 0.42 4.91 8.92 -34.47 -0.31 4.60 16 28 H 0.10 1.98 7.80 -52.49 -0.41 1.58 16 29 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 30 H 0.12 2.93 6.26 -52.49 -0.33 2.60 16 31 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 32 H 0.10 1.75 7.15 -52.49 -0.38 1.38 16 LS Contribution 301.10 15.07 4.54 4.54 Total: -1.00 -28.53 301.10 -7.50 -36.03 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.02 Total: 7.88 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -3.04 Total: -25.85 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 1.56 Total: -39.01 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -2.00 Total: -34.48 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 16 Polarization: 39.35 SS G_CDS: -0.52 Total: 38.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.53 -7.50 -36.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313464508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.637 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds