Wall clock time and date at job start Tue Mar 31 2020 01:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47332 * 2 1 4 4 C 1.47203 * 109.47184 * 240.00391 * 2 1 3 5 5 N 2.60805 * 109.47035 * 240.00303 * 2 1 3 6 6 S 1.81401 * 109.47121 * 120.00326 * 2 1 3 7 7 O 1.42102 * 110.54122 * 188.36129 * 6 2 1 8 8 O 1.42097 * 110.54080 * 51.61251 * 6 2 1 9 9 N 1.65596 * 104.45040 * 299.98544 * 6 2 1 10 10 C 1.39682 * 120.00017 * 294.22979 * 9 6 2 11 11 C 1.39331 * 119.94881 * 284.94979 * 10 9 6 12 12 C 1.38480 * 120.41929 * 180.25685 * 11 10 9 13 13 C 1.37693 * 120.32809 * 359.44792 * 12 11 10 14 14 C 1.40745 * 119.89148 * 0.27751 * 13 12 11 15 15 C 1.41405 * 120.20900 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99991 * 208.69994 * 15 14 13 17 17 C 1.39926 * 120.00129 * 28.69351 * 15 14 13 18 18 N 1.30831 * 120.00126 * 12.03897 * 17 15 14 19 19 Si 1.86798 * 120.00349 * 192.04223 * 17 15 14 20 20 H 1.48499 * 109.47301 * 59.99874 * 19 17 15 21 21 H 1.48502 * 109.47283 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46960 * 299.99919 * 19 17 15 23 23 C 1.38284 * 119.95091 * 104.66135 * 10 9 6 24 24 H 1.08998 * 109.47189 * 64.56808 * 1 2 3 25 25 H 1.09001 * 109.47566 * 184.56620 * 1 2 3 26 26 H 1.08997 * 109.47444 * 304.57097 * 1 2 3 27 27 H 0.97003 * 120.00036 * 114.22444 * 9 6 2 28 28 H 1.07995 * 119.79484 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.83655 * 179.72211 * 12 11 10 30 30 H 1.08001 * 120.05477 * 180.29452 * 13 12 11 31 31 H 0.96996 * 120.00350 * 180.02562 * 18 17 15 32 32 H 1.08000 * 120.16237 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6938 -1.2020 5 7 2.3993 -1.2293 -2.1295 6 16 2.1346 -0.8552 1.4811 7 8 3.5421 -0.7033 1.6049 8 8 1.5218 -2.1312 1.6051 9 7 1.5168 0.0192 2.7444 10 6 1.9384 1.3339 2.9560 11 6 3.1961 1.5817 3.5020 12 6 3.6218 2.8811 3.7209 13 6 2.8106 3.9435 3.3906 14 6 1.5398 3.7089 2.8330 15 6 0.7010 4.7949 2.4918 16 1 -0.3723 4.6756 2.5125 17 6 1.2613 6.0242 2.1275 18 7 2.5418 6.1098 1.8732 19 14 0.1812 7.5433 2.0042 20 1 -0.4472 7.8121 3.3226 21 1 1.0100 8.7089 1.6046 22 1 -0.8778 7.3165 0.9881 23 6 1.1093 2.3877 2.6179 24 1 -0.3633 0.4413 -0.9281 25 1 -0.3634 -1.0244 0.0818 26 1 -0.3634 0.5831 0.8462 27 1 0.8620 -0.3816 3.3373 28 1 3.8413 0.7551 3.7604 29 1 4.5968 3.0623 4.1488 30 1 3.1490 4.9553 3.5589 31 1 2.9304 6.9620 1.6210 32 1 0.1363 2.1970 2.1899 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313464508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:20 Heat of formation + Delta-G solvation = -44.800702 kcal Electronic energy + Delta-G solvation = -19402.508220 eV Core-core repulsion = 16261.296467 eV Total energy + Delta-G solvation = -3141.211753 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71275 -38.45808 -38.28074 -37.24932 -36.39499 -34.73006 -34.24186 -31.69021 -29.43430 -27.08702 -26.07646 -22.82835 -22.59414 -21.17380 -19.69995 -19.12234 -18.90339 -17.54282 -17.47015 -16.98423 -16.39420 -16.19207 -15.60939 -15.35036 -14.75604 -14.69822 -14.54112 -14.14455 -13.87816 -13.70921 -13.40693 -13.30961 -13.26880 -13.10534 -12.90767 -12.80458 -12.71786 -12.51622 -12.11613 -11.88332 -11.72435 -11.47097 -10.98662 -10.64196 -9.33739 -9.13352 -8.52765 -6.28707 -1.16076 0.95751 1.04545 1.29130 1.34403 1.47440 1.51688 1.56566 1.58852 2.16122 2.28025 2.67985 2.80746 3.04296 3.60343 3.73846 3.94027 4.42277 4.57527 4.63448 4.70488 4.76133 5.07390 5.16045 5.22197 5.33826 5.43730 5.65374 5.93258 6.01173 6.11731 6.18239 6.22736 6.44138 6.76354 7.01351 7.08127 8.43519 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.005489 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.348301 B = 5099.815762 C = 5668.396084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.491 4.491 3 H 0.192 0.808 4 C 0.230 3.770 5 N -0.429 5.429 6 S 2.633 3.367 7 O -0.968 6.968 8 O -0.960 6.960 9 N -1.033 6.033 10 C 0.136 3.864 11 C -0.218 4.218 12 C -0.108 4.108 13 C -0.169 4.169 14 C 0.083 3.917 15 C -0.490 4.490 16 H 0.086 0.914 17 C 0.036 3.964 18 N -0.833 5.833 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.259 1.259 23 C -0.207 4.207 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.434 0.566 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.285 0.715 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.046 -5.189 0.141 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.601 4.601 3 H 0.209 0.791 4 C -0.088 4.088 5 N -0.106 5.106 6 S 2.724 3.276 7 O -0.957 6.957 8 O -0.950 6.950 9 N -0.791 5.791 10 C 0.042 3.958 11 C -0.240 4.240 12 C -0.127 4.127 13 C -0.190 4.190 14 C 0.080 3.920 15 C -0.520 4.520 16 H 0.104 0.896 17 C -0.178 4.178 18 N -0.460 5.460 19 Si 0.797 3.203 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.183 1.183 23 C -0.229 4.229 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.131 0.869 27 H 0.275 0.725 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.645 -6.589 -1.408 8.184 hybrid contribution -0.572 1.529 0.143 1.639 sum -5.217 -5.060 -1.265 7.377 Atomic orbital electron populations 1.21856 0.84218 1.06165 1.07876 1.28448 1.10643 1.14038 1.06977 0.79060 1.27801 0.93163 0.93398 0.94484 1.81249 1.08960 1.09866 1.10560 1.04663 0.74131 0.73485 0.75367 1.93604 1.31042 1.86269 1.84816 1.93578 1.78215 1.37821 1.85341 1.52539 1.59928 1.22705 1.43974 1.16900 0.94082 0.82090 1.02705 1.20976 0.97735 0.96314 1.08954 1.20861 0.98904 0.92665 1.00296 1.21481 0.96937 0.97873 1.02666 1.17823 0.92491 0.92705 0.88956 1.19786 0.95050 0.95333 1.41815 0.89602 1.26622 0.96276 1.02890 0.92054 1.69839 1.13891 1.28098 1.34159 0.85348 0.78727 0.76528 0.79729 1.18673 1.20343 1.18302 1.21470 1.01362 0.91112 1.08959 0.88108 0.88894 0.86919 0.72464 0.87293 0.87217 0.87985 0.90476 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.02 71.98 0.65 -1.73 16 2 C -0.49 -11.37 3.29 28.79 0.09 -11.27 16 3 H 0.19 4.24 8.14 -2.39 -0.02 4.22 16 4 C 0.23 6.40 14.65 89.44 1.31 7.71 16 5 N -0.43 -13.66 18.54 20.01 0.37 -13.29 16 6 S 2.63 73.32 4.83 -56.49 -0.27 73.05 16 7 O -0.97 -34.78 16.85 -127.65 -2.15 -36.93 16 8 O -0.96 -28.38 17.84 -127.65 -2.28 -30.65 16 9 N -1.03 -27.14 5.40 -51.49 -0.28 -27.41 16 10 C 0.14 4.68 5.72 38.16 0.22 4.90 16 11 C -0.22 -8.48 9.19 22.59 0.21 -8.27 16 12 C -0.11 -4.53 10.02 22.20 0.22 -4.31 16 13 C -0.17 -7.90 8.66 22.75 0.20 -7.70 16 14 C 0.08 3.77 5.54 -21.31 -0.12 3.65 16 15 C -0.49 -22.51 9.06 23.46 0.21 -22.30 16 16 H 0.09 3.68 7.87 -2.91 -0.02 3.65 16 17 C 0.04 1.61 5.23 85.25 0.45 2.05 16 18 N -0.83 -40.02 10.90 21.82 0.24 -39.79 16 19 Si 0.97 34.67 29.58 68.60 2.03 36.70 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 21 H -0.28 -9.77 7.11 99.48 0.71 -9.07 16 22 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 23 C -0.21 -7.63 9.71 22.86 0.22 -7.41 16 24 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.09 1.34 7.96 -2.39 -0.02 1.32 16 26 H 0.11 1.59 7.16 -2.39 -0.02 1.57 16 27 H 0.43 8.77 8.92 -96.74 -0.86 7.91 16 28 H 0.11 4.08 7.80 -2.91 -0.02 4.06 16 29 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.10 5.09 6.26 -2.91 -0.02 5.08 16 31 H 0.28 12.66 8.30 -92.71 -0.77 11.89 16 32 H 0.13 4.02 7.15 -2.91 -0.02 4.00 16 Total: -1.00 -61.03 301.10 1.63 -59.40 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.31 Total: 23.61 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 3.66 Total: -44.68 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: 0.33 Total: -80.49 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -4.43 Total: -67.59 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Atomic # 16 Polarization: 73.32 SS G_CDS: -0.27 Total: 73.05 kcal Total: -61.03 1.63 -59.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313464508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.600 kcal (2) G-P(sol) polarization free energy of solvation -61.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds