Wall clock time and date at job start Tue Mar 31 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47399 * 2 1 4 4 C 1.47200 * 109.47242 * 120.00175 * 2 1 3 5 5 N 2.60796 * 109.47140 * 120.00012 * 2 1 3 6 6 S 1.81402 * 109.46736 * 239.99938 * 2 1 3 7 7 O 1.42100 * 110.54237 * 302.42753 * 6 2 1 8 8 O 1.42098 * 110.53807 * 165.68176 * 6 2 1 9 9 N 1.65593 * 104.45006 * 54.05719 * 6 2 1 10 10 C 1.39684 * 120.00403 * 63.93646 * 9 6 2 11 11 C 1.39343 * 119.94841 * 253.08217 * 10 9 6 12 12 C 1.38482 * 120.42024 * 179.71657 * 11 10 9 13 13 C 1.37691 * 120.32366 * 0.55660 * 12 11 10 14 14 C 1.40751 * 119.89551 * 359.71692 * 13 12 11 15 15 C 1.41409 * 120.20926 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99844 * 204.55378 * 15 14 13 17 17 C 1.39930 * 120.00032 * 24.55493 * 15 14 13 18 18 N 1.30834 * 119.99557 * 16.17774 * 17 15 14 19 19 Si 1.86791 * 120.00012 * 196.18011 * 17 15 14 20 20 H 1.48504 * 109.47221 * 89.99985 * 19 17 15 21 21 H 1.48500 * 109.47250 * 210.00028 * 19 17 15 22 22 H 1.48499 * 109.47483 * 330.00006 * 19 17 15 23 23 C 1.38268 * 119.95194 * 73.34969 * 10 9 6 24 24 H 1.08995 * 109.47452 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46990 * 300.00005 * 1 2 3 26 26 H 1.08996 * 109.47367 * 59.99943 * 1 2 3 27 27 H 0.97001 * 120.00105 * 244.21530 * 9 6 2 28 28 H 1.07995 * 119.79110 * 0.02562 * 11 10 9 29 29 H 1.07995 * 119.84073 * 180.28119 * 12 11 10 30 30 H 1.08001 * 120.05148 * 179.74677 * 13 12 11 31 31 H 0.97000 * 119.99650 * 179.97438 * 18 17 15 32 32 H 1.07999 * 120.16413 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1294 6 16 2.1345 -0.8552 -1.4812 7 8 1.6280 -2.1818 -1.5327 8 8 3.5163 -0.5903 -1.6806 9 7 1.3848 -0.0825 -2.7394 10 6 1.6531 1.2650 -2.9910 11 6 0.6985 2.2331 -2.6859 12 6 0.9564 3.5724 -2.9259 13 6 2.1557 3.9610 -3.4797 14 6 3.1274 2.9938 -3.7984 15 6 4.3615 3.3855 -4.3669 16 1 4.9276 2.6855 -4.9634 17 6 4.8492 4.6801 -4.1564 18 7 4.3502 5.4195 -3.1993 19 14 6.2124 5.3525 -5.2420 20 1 5.6169 6.0357 -6.4185 21 1 7.0292 6.3215 -4.4680 22 1 7.0750 4.2351 -5.7028 23 6 2.8633 1.6357 -3.5476 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7562 -0.5646 -3.2992 28 1 -0.2466 1.9376 -2.2549 29 1 0.2116 4.3153 -2.6817 30 1 2.3506 5.0063 -3.6688 31 1 4.6886 6.3168 -3.0532 32 1 3.6024 0.8859 -3.7881 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313464510.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:24 Heat of formation + Delta-G solvation = -24.492585 kcal Electronic energy + Delta-G solvation = -19379.645219 eV Core-core repulsion = 16239.314092 eV Total energy + Delta-G solvation = -3140.331127 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.14120 -37.25601 -36.95694 -35.89214 -34.92669 -33.35916 -32.99185 -30.02627 -27.85362 -25.44709 -25.15917 -21.28943 -20.93997 -19.89463 -18.29707 -17.72772 -17.62453 -16.43561 -15.95784 -15.38397 -14.88429 -14.84620 -14.37722 -13.80215 -13.49261 -13.45412 -13.16895 -12.94080 -12.53954 -12.33404 -12.12974 -12.02829 -11.89021 -11.86250 -11.66692 -11.37618 -11.20750 -10.88057 -10.60097 -10.54215 -10.14896 -9.96546 -9.37116 -9.12985 -7.69021 -7.50421 -6.88291 -4.50412 0.09278 2.42980 2.51921 2.54099 2.69204 2.77589 3.03261 3.07181 3.10103 3.32304 3.86304 3.88494 4.17082 4.44481 4.66871 4.87214 5.30237 5.42361 5.46209 5.75867 5.90543 6.15020 6.23284 6.82067 6.86185 6.92150 7.10545 7.15842 7.16515 7.47805 7.62018 7.83233 7.90947 8.12256 8.47827 8.74414 8.77130 10.06235 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.005096 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.992404 B = 5493.288626 C = 5682.961638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.504 4.504 3 H 0.182 0.818 4 C 0.217 3.783 5 N -0.397 5.397 6 S 2.619 3.381 7 O -0.954 6.954 8 O -0.922 6.922 9 N -1.043 6.043 10 C 0.121 3.879 11 C -0.240 4.240 12 C -0.100 4.100 13 C -0.155 4.155 14 C 0.110 3.890 15 C -0.454 4.454 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.792 5.792 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.197 4.197 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.418 0.582 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.282 0.718 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.406 -3.472 1.517 8.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.611 4.611 3 H 0.199 0.801 4 C -0.102 4.102 5 N -0.074 5.074 6 S 2.706 3.294 7 O -0.943 6.943 8 O -0.912 6.912 9 N -0.800 5.800 10 C 0.028 3.972 11 C -0.262 4.262 12 C -0.120 4.120 13 C -0.175 4.175 14 C 0.107 3.893 15 C -0.483 4.483 16 H 0.100 0.900 17 C -0.143 4.143 18 N -0.417 5.417 19 Si 0.736 3.264 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.185 1.185 23 C -0.219 4.219 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.256 0.744 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.141 0.859 31 H 0.093 0.907 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.072 -4.719 3.137 8.305 hybrid contribution -0.175 1.098 -0.559 1.244 sum -6.246 -3.621 2.579 7.667 Atomic orbital electron populations 1.21663 0.86918 1.04690 1.06215 1.28466 1.08461 1.14413 1.09751 0.80082 1.27516 0.94093 0.94057 0.94509 1.81233 1.07829 1.08842 1.09506 1.05363 0.75256 0.73781 0.75017 1.93584 1.81312 1.33813 1.85632 1.93677 1.29997 1.84858 1.82623 1.52803 1.62193 1.20296 1.44679 1.17034 0.95873 0.80063 1.04208 1.20513 0.99130 0.92910 1.13681 1.20592 0.96989 0.94268 1.00112 1.21532 0.92260 1.00514 1.03147 1.17543 0.92650 0.90094 0.89049 1.19652 1.03843 0.96987 1.27818 0.90035 1.25923 0.97741 0.96584 0.94086 1.69789 1.38136 1.09756 1.24022 0.86248 0.80444 0.79333 0.80404 1.19206 1.20259 1.18462 1.21374 0.96994 0.97004 1.06569 0.90333 0.89762 0.88338 0.74434 0.88551 0.88749 0.85868 0.90675 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.03 37.16 0.34 -0.95 16 2 C -0.50 -6.29 3.27 -29.52 -0.10 -6.39 16 3 H 0.18 2.09 8.14 -51.92 -0.42 1.67 16 4 C 0.22 3.16 14.65 -20.76 -0.30 2.85 16 5 N -0.40 -6.48 18.54 42.15 0.78 -5.70 16 6 S 2.62 40.11 4.84 -107.50 -0.52 39.59 16 7 O -0.95 -15.58 18.08 -57.54 -1.04 -16.62 16 8 O -0.92 -17.99 16.75 -57.54 -0.96 -18.95 16 9 N -1.04 -15.27 4.99 32.37 0.16 -15.10 16 10 C 0.12 2.22 5.72 -83.86 -0.48 1.74 16 11 C -0.24 -4.17 9.70 -39.08 -0.38 -4.55 16 12 C -0.10 -1.95 10.02 -39.69 -0.40 -2.35 16 13 C -0.15 -3.54 8.69 -38.83 -0.34 -3.88 16 14 C 0.11 2.67 5.58 -106.85 -0.60 2.07 16 15 C -0.45 -11.28 9.06 -37.74 -0.34 -11.62 16 16 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 17 C 0.07 1.76 5.17 -17.34 -0.09 1.67 16 18 N -0.79 -19.02 10.86 55.55 0.60 -18.42 16 19 Si 0.91 17.74 29.59 -169.99 -5.03 12.71 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 21 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.20 -4.37 8.91 -38.68 -0.34 -4.71 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.10 0.84 5.92 -51.93 -0.31 0.53 16 27 H 0.42 4.92 8.92 -34.46 -0.31 4.62 16 28 H 0.10 1.34 6.60 -52.49 -0.35 0.99 16 29 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.12 2.95 6.09 -52.49 -0.32 2.63 16 31 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 32 H 0.11 2.46 7.66 -52.49 -0.40 2.06 16 LS Contribution 298.63 15.07 4.50 4.50 Total: -1.00 -29.37 298.63 -7.46 -36.83 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -2.92 Total: 7.27 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -3.03 Total: -26.12 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 1.55 Total: -39.22 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -2.00 Total: -35.57 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 16 Polarization: 40.11 SS G_CDS: -0.52 Total: 39.59 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.37 -7.46 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313464510.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.340 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds