Wall clock time and date at job start Tue Mar 31 2020 01:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47399 * 2 1 4 4 C 1.47200 * 109.47242 * 120.00175 * 2 1 3 5 5 N 2.60796 * 109.47140 * 120.00012 * 2 1 3 6 6 S 1.81402 * 109.46736 * 239.99938 * 2 1 3 7 7 O 1.42100 * 110.54237 * 302.42753 * 6 2 1 8 8 O 1.42098 * 110.53807 * 165.68176 * 6 2 1 9 9 N 1.65593 * 104.45006 * 54.05719 * 6 2 1 10 10 C 1.39684 * 120.00403 * 63.93646 * 9 6 2 11 11 C 1.39343 * 119.94841 * 253.08217 * 10 9 6 12 12 C 1.38482 * 120.42024 * 179.71657 * 11 10 9 13 13 C 1.37691 * 120.32366 * 0.55660 * 12 11 10 14 14 C 1.40751 * 119.89551 * 359.71692 * 13 12 11 15 15 C 1.41409 * 120.20926 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99844 * 204.55378 * 15 14 13 17 17 C 1.39930 * 120.00032 * 24.55493 * 15 14 13 18 18 N 1.30834 * 119.99557 * 16.17774 * 17 15 14 19 19 Si 1.86791 * 120.00012 * 196.18011 * 17 15 14 20 20 H 1.48504 * 109.47221 * 89.99985 * 19 17 15 21 21 H 1.48500 * 109.47250 * 210.00028 * 19 17 15 22 22 H 1.48499 * 109.47483 * 330.00006 * 19 17 15 23 23 C 1.38268 * 119.95194 * 73.34969 * 10 9 6 24 24 H 1.08995 * 109.47452 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46990 * 300.00005 * 1 2 3 26 26 H 1.08996 * 109.47367 * 59.99943 * 1 2 3 27 27 H 0.97001 * 120.00105 * 244.21530 * 9 6 2 28 28 H 1.07995 * 119.79110 * 0.02562 * 11 10 9 29 29 H 1.07995 * 119.84073 * 180.28119 * 12 11 10 30 30 H 1.08001 * 120.05148 * 179.74677 * 13 12 11 31 31 H 0.97000 * 119.99650 * 179.97438 * 18 17 15 32 32 H 1.07999 * 120.16413 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 1.2019 5 7 2.3993 -1.2294 2.1294 6 16 2.1345 -0.8552 -1.4812 7 8 1.6280 -2.1818 -1.5327 8 8 3.5163 -0.5903 -1.6806 9 7 1.3848 -0.0825 -2.7394 10 6 1.6531 1.2650 -2.9910 11 6 0.6985 2.2331 -2.6859 12 6 0.9564 3.5724 -2.9259 13 6 2.1557 3.9610 -3.4797 14 6 3.1274 2.9938 -3.7984 15 6 4.3615 3.3855 -4.3669 16 1 4.9276 2.6855 -4.9634 17 6 4.8492 4.6801 -4.1564 18 7 4.3502 5.4195 -3.1993 19 14 6.2124 5.3525 -5.2420 20 1 5.6169 6.0357 -6.4185 21 1 7.0292 6.3215 -4.4680 22 1 7.0750 4.2351 -5.7028 23 6 2.8633 1.6357 -3.5476 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7562 -0.5646 -3.2992 28 1 -0.2466 1.9376 -2.2549 29 1 0.2116 4.3153 -2.6817 30 1 2.3506 5.0063 -3.6688 31 1 4.6886 6.3168 -3.0532 32 1 3.6024 0.8859 -3.7881 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313464510.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:23 Heat of formation + Delta-G solvation = -44.606056 kcal Electronic energy + Delta-G solvation = -19380.517405 eV Core-core repulsion = 16239.314092 eV Total energy + Delta-G solvation = -3141.203313 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.70730 -38.47693 -38.25984 -37.24757 -36.45536 -34.71178 -34.25647 -31.69034 -29.41025 -27.14379 -26.06883 -22.84114 -22.56795 -21.19073 -19.69601 -19.12359 -18.88841 -17.58890 -17.52232 -16.94291 -16.41445 -16.17648 -15.62078 -15.34029 -14.74693 -14.72626 -14.52689 -14.07750 -13.89715 -13.75824 -13.41435 -13.33583 -13.26994 -13.08168 -13.01169 -12.82052 -12.71768 -12.39036 -12.11690 -11.84400 -11.71857 -11.51555 -11.02462 -10.62447 -9.34581 -9.11450 -8.59629 -6.30920 -1.16951 0.96397 1.05630 1.29270 1.35537 1.42028 1.51588 1.53379 1.55198 2.16331 2.25076 2.68712 2.74996 3.06402 3.60587 3.74154 3.93958 4.47147 4.56864 4.62270 4.69362 4.84142 5.14366 5.15698 5.21822 5.32660 5.42739 5.69465 5.99914 6.01546 6.05420 6.17353 6.21936 6.49484 6.76703 6.99926 7.05447 8.36847 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.005096 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.992404 B = 5493.288626 C = 5682.961638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.485 4.485 3 H 0.197 0.803 4 C 0.230 3.770 5 N -0.430 5.430 6 S 2.625 3.375 7 O -0.964 6.964 8 O -0.974 6.974 9 N -1.033 6.033 10 C 0.136 3.864 11 C -0.209 4.209 12 C -0.099 4.099 13 C -0.176 4.176 14 C 0.079 3.921 15 C -0.501 4.501 16 H 0.067 0.933 17 C 0.039 3.961 18 N -0.822 5.822 19 Si 0.975 3.025 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.266 1.266 23 C -0.223 4.223 24 H 0.089 0.911 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.434 0.566 28 H 0.151 0.849 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.288 0.712 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.117 -3.363 2.322 10.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.596 4.596 3 H 0.214 0.786 4 C -0.089 4.089 5 N -0.107 5.107 6 S 2.716 3.284 7 O -0.954 6.954 8 O -0.963 6.963 9 N -0.791 5.791 10 C 0.043 3.957 11 C -0.231 4.231 12 C -0.118 4.118 13 C -0.197 4.197 14 C 0.076 3.924 15 C -0.531 4.531 16 H 0.085 0.915 17 C -0.176 4.176 18 N -0.449 5.449 19 Si 0.796 3.204 20 H -0.184 1.184 21 H -0.193 1.193 22 H -0.190 1.190 23 C -0.245 4.245 24 H 0.108 0.892 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.275 0.725 28 H 0.169 0.831 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.795 -4.648 3.896 10.684 hybrid contribution 0.476 0.917 -0.697 1.246 sum -8.320 -3.730 3.199 9.663 Atomic orbital electron populations 1.21919 0.83712 1.06257 1.08200 1.28385 1.10959 1.13974 1.06306 0.78614 1.27811 0.93209 0.93410 0.94474 1.81255 1.08893 1.09741 1.10810 1.04847 0.74115 0.73612 0.75780 1.93571 1.81114 1.34487 1.86181 1.93634 1.33340 1.85461 1.83899 1.52515 1.62342 1.18840 1.45451 1.16951 0.94566 0.81815 1.02401 1.21024 1.00255 0.91483 1.10301 1.20976 0.96132 0.96126 0.98567 1.21511 0.93760 0.99483 1.04901 1.17822 0.93100 0.91374 0.90086 1.19818 1.05184 0.98143 1.29973 0.91476 1.26578 0.99725 0.96336 0.94941 1.69822 1.39681 1.10253 1.25111 0.85306 0.77736 0.78441 0.78877 1.18374 1.19345 1.19025 1.21401 0.98673 0.96021 1.08450 0.89210 0.87447 0.86586 0.72458 0.83142 0.85506 0.87692 0.90134 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.03 71.98 0.65 -1.28 16 2 C -0.49 -10.48 3.27 28.79 0.09 -10.39 16 3 H 0.20 3.80 8.14 -2.39 -0.02 3.78 16 4 C 0.23 6.15 14.65 89.44 1.31 7.46 16 5 N -0.43 -13.39 18.54 20.01 0.37 -13.02 16 6 S 2.63 75.94 4.84 -56.49 -0.27 75.66 16 7 O -0.96 -29.64 18.08 -127.65 -2.31 -31.94 16 8 O -0.97 -38.43 16.75 -127.65 -2.14 -40.57 16 9 N -1.03 -27.46 4.99 -51.49 -0.26 -27.72 16 10 C 0.14 4.68 5.72 38.16 0.22 4.90 16 11 C -0.21 -6.29 9.70 22.59 0.22 -6.07 16 12 C -0.10 -3.55 10.02 22.20 0.22 -3.33 16 13 C -0.18 -8.10 8.69 22.75 0.20 -7.91 16 14 C 0.08 3.97 5.58 -21.31 -0.12 3.85 16 15 C -0.50 -26.42 9.06 23.46 0.21 -26.21 16 16 H 0.07 3.53 7.90 -2.91 -0.02 3.51 16 17 C 0.04 1.91 5.17 85.25 0.44 2.35 16 18 N -0.82 -40.79 10.86 21.82 0.24 -40.55 16 19 Si 0.97 37.65 29.59 68.60 2.03 39.68 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 21 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 22 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 23 C -0.22 -10.08 8.91 22.86 0.20 -9.88 16 24 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.12 1.19 5.92 -2.39 -0.01 1.18 16 27 H 0.43 8.78 8.92 -96.75 -0.86 7.91 16 28 H 0.15 3.00 6.60 -2.91 -0.02 2.98 16 29 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 30 H 0.11 5.15 6.09 -2.91 -0.02 5.13 16 31 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 32 H 0.09 4.24 7.66 -2.91 -0.02 4.22 16 Total: -1.00 -67.55 298.63 1.62 -65.93 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.31 Total: 19.04 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 3.65 Total: -46.51 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: 0.35 Total: -81.29 kcal Atomic # 8 Polarization: -68.07 SS G_CDS: -4.45 Total: -72.51 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Atomic # 16 Polarization: 75.94 SS G_CDS: -0.27 Total: 75.66 kcal Total: -67.55 1.62 -65.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313464510.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.324 kcal (2) G-P(sol) polarization free energy of solvation -67.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds