Wall clock time and date at job start Tue Mar 31 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47216 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46975 * 120.00108 * 3 2 1 6 6 H 1.48499 * 109.47526 * 240.00270 * 3 2 1 7 7 C 1.40042 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00378 * 4.67208 * 7 2 1 9 9 C 1.46373 * 119.99893 * 184.67122 * 7 2 1 10 10 O 1.21686 * 120.00338 * 6.24667 * 9 7 2 11 11 N 1.34786 * 119.99966 * 186.24264 * 9 7 2 12 12 C 1.46503 * 119.99926 * 179.97438 * 11 9 7 13 13 H 1.09001 * 110.43242 * 34.29891 * 12 11 9 14 14 C 1.54626 * 110.48529 * 156.84529 * 12 11 9 15 15 C 1.54681 * 101.66980 * 143.39454 * 14 12 11 16 16 N 1.46758 * 105.53534 * 334.73891 * 15 14 12 17 17 C 1.46506 * 124.35032 * 196.94274 * 16 15 14 18 18 C 1.52997 * 109.47113 * 269.95398 * 17 16 15 19 19 F 1.39895 * 109.47480 * 59.99999 * 18 17 16 20 20 F 1.39905 * 109.47180 * 180.02562 * 18 17 16 21 21 F 1.39905 * 109.46883 * 299.99605 * 18 17 16 22 22 C 1.34424 * 111.30170 * 16.92516 * 16 15 14 23 23 O 1.21275 * 124.94391 * 179.56071 * 22 16 15 24 24 H 0.96993 * 120.00036 * 174.89669 * 1 2 3 25 25 H 0.96996 * 119.99987 * 0.02562 * 11 9 7 26 26 H 1.09001 * 110.96396 * 261.59883 * 14 12 11 27 27 H 1.09000 * 110.96903 * 25.35060 * 14 12 11 28 28 H 1.08999 * 110.29618 * 215.67607 * 15 14 12 29 29 H 1.09006 * 110.13969 * 93.72198 * 15 14 12 30 30 H 1.08998 * 109.46839 * 29.95725 * 17 16 15 31 31 H 1.09003 * 109.46906 * 149.95096 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6964 1.2125 6 1 3.0944 1.6966 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 1.4697 -2.1466 -0.0771 9 6 3.4670 -1.2149 0.1027 10 8 4.0644 -0.1739 0.3030 11 7 4.1499 -2.3701 -0.0241 12 6 5.6113 -2.3721 0.0787 13 1 5.9432 -1.6243 0.7989 14 6 6.1236 -3.7748 0.4799 15 6 7.4327 -3.8755 -0.3379 16 7 7.2504 -2.9770 -1.4838 17 6 8.0670 -3.0118 -2.6997 18 6 9.2708 -2.0824 -2.5323 19 9 10.0389 -2.5058 -1.4424 20 9 10.0503 -2.1152 -3.6936 21 9 8.8235 -0.7758 -2.3082 22 6 6.2376 -2.1182 -1.2748 23 8 5.8785 -1.2639 -2.0570 24 1 -0.4850 -0.8366 -0.0747 25 1 3.6738 -3.1999 -0.1840 26 1 6.3247 -3.8251 1.5500 27 1 5.4166 -4.5486 0.1807 28 1 7.5862 -4.8985 -0.6813 29 1 8.2789 -3.5489 0.2667 30 1 8.4153 -4.0297 -2.8744 31 1 7.4685 -2.6819 -3.5489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330894720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:39 Heat of formation + Delta-G solvation = -233.728097 kcal Electronic energy + Delta-G solvation = -22604.435854 eV Core-core repulsion = 18470.421982 eV Total energy + Delta-G solvation = -4134.013871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.18363 -47.75484 -47.61450 -40.49160 -37.63866 -36.33324 -34.29905 -32.84717 -31.71411 -28.48865 -27.37149 -25.51668 -23.75241 -21.89467 -20.44785 -19.48391 -18.65137 -18.53764 -18.06824 -17.80851 -16.68023 -16.16829 -15.72286 -15.18138 -14.59465 -14.58843 -14.14776 -14.08796 -13.93292 -13.81948 -13.79248 -13.64909 -13.60036 -12.89884 -12.79344 -12.55458 -12.53522 -12.15441 -12.03375 -11.86180 -11.05457 -10.44687 -10.19764 -9.82652 -9.19140 -9.05424 -8.92978 -8.06267 -7.90363 -6.98245 -4.92631 2.36679 2.54491 2.91223 3.64239 3.66412 3.74761 3.80856 4.07694 4.12951 4.25120 4.29692 4.47389 4.53660 4.64554 4.81918 4.88148 4.97082 5.05616 5.24137 5.51516 5.56171 5.75122 6.00596 6.18966 6.88145 7.41706 7.52049 7.74175 8.08422 8.27994 8.83892 8.97682 10.04120 10.35213 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.005062 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.211570 B = 5530.271384 C = 6077.856143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.063 3.937 3 Si 1.125 2.875 4 H -0.322 1.322 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.595 4.595 8 H 0.070 0.930 9 C 0.554 3.446 10 O -0.606 6.606 11 N -0.736 5.736 12 C 0.129 3.871 13 H 0.120 0.880 14 C -0.136 4.136 15 C 0.107 3.893 16 N -0.631 5.631 17 C 0.090 3.910 18 C 0.430 3.570 19 F -0.185 7.185 20 F -0.185 7.185 21 F -0.172 7.172 22 C 0.503 3.497 23 O -0.482 6.482 24 H 0.277 0.723 25 H 0.391 0.609 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.443 -12.863 -2.480 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.154 4.154 3 Si 0.958 3.042 4 H -0.254 1.254 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.631 4.631 8 H 0.088 0.912 9 C 0.363 3.637 10 O -0.497 6.497 11 N -0.389 5.389 12 C 0.018 3.982 13 H 0.137 0.863 14 C -0.175 4.175 15 C -0.016 4.016 16 N -0.369 5.369 17 C -0.036 4.036 18 C 0.374 3.626 19 F -0.166 7.166 20 F -0.166 7.166 21 F -0.153 7.153 22 C 0.289 3.711 23 O -0.351 6.351 24 H 0.088 0.912 25 H 0.225 0.775 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.140 0.860 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.408 -10.085 -2.745 20.305 hybrid contribution 0.319 -2.307 -0.263 2.344 sum 17.727 -12.392 -3.009 21.837 Atomic orbital electron populations 1.70663 1.07579 1.31939 1.35836 1.27136 0.95275 1.04937 0.88087 0.82453 0.71484 0.70767 0.79510 1.25413 1.20775 1.21377 1.21991 0.89612 0.96355 1.55144 0.91159 1.18504 0.88644 0.81182 0.75333 1.90172 1.70396 1.30913 1.58243 1.45690 1.02279 1.11586 1.79317 1.21201 0.85144 0.98024 0.93816 0.86251 1.22942 0.96176 0.96926 1.01423 1.22184 0.98713 0.94038 0.86675 1.48270 1.33853 1.37880 1.16935 1.22397 0.89940 1.00167 0.91061 1.21441 0.85533 0.81961 0.73697 1.93163 1.77948 1.89810 1.55727 1.93181 1.77293 1.96560 1.49597 1.93276 1.88867 1.38817 1.94366 1.22074 0.78980 0.79849 0.90236 1.90774 1.62678 1.31708 1.49978 0.91240 0.77541 0.88362 0.89365 0.89952 0.90516 0.86026 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.42 13.64 55.55 0.76 -23.66 16 2 C 0.06 1.87 5.52 -17.37 -0.10 1.77 16 3 Si 1.13 31.09 25.99 -169.99 -4.42 26.67 16 4 H -0.32 -8.52 7.11 56.52 0.40 -8.11 16 5 H -0.28 -7.88 6.78 56.52 0.38 -7.50 16 6 H -0.29 -8.22 7.11 56.52 0.40 -7.82 16 7 C -0.59 -16.96 9.96 -35.64 -0.36 -17.31 16 8 H 0.07 1.94 8.05 -52.49 -0.42 1.52 16 9 C 0.55 14.87 7.57 -12.98 -0.10 14.77 16 10 O -0.61 -17.88 11.75 5.20 0.06 -17.82 16 11 N -0.74 -15.10 5.14 -55.22 -0.28 -15.39 16 12 C 0.13 2.17 3.25 -67.94 -0.22 1.95 16 13 H 0.12 2.21 7.61 -51.93 -0.40 1.82 16 14 C -0.14 -1.36 6.89 -24.99 -0.17 -1.53 16 15 C 0.11 0.91 7.23 -3.02 -0.02 0.89 16 16 N -0.63 -7.82 2.81 -172.29 -0.48 -8.30 16 17 C 0.09 0.90 5.91 -4.04 -0.02 0.88 16 18 C 0.43 5.05 3.29 37.16 0.12 5.17 16 19 F -0.18 -2.09 17.10 2.25 0.04 -2.05 16 20 F -0.18 -2.06 17.32 2.25 0.04 -2.02 16 21 F -0.17 -2.72 16.95 2.25 0.04 -2.68 16 22 C 0.50 9.04 7.36 -10.86 -0.08 8.96 16 23 O -0.48 -11.24 17.59 5.56 0.10 -11.15 16 24 H 0.28 7.74 8.72 -40.82 -0.36 7.39 16 25 H 0.39 6.92 8.38 -40.82 -0.34 6.58 16 26 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.78 7.81 -51.93 -0.41 0.37 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.12 1.32 7.93 -51.93 -0.41 0.90 16 LS Contribution 287.30 15.07 4.33 4.33 Total: -1.00 -36.92 287.30 -3.61 -40.52 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: -2.84 Total: -4.00 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: -0.95 Total: 15.55 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.01 Total: -47.34 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: 0.16 Total: -28.97 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.12 Total: -6.76 kcal Atomic # 14 Polarization: 31.09 SS G_CDS: -4.42 Total: 26.67 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -36.92 -3.61 -40.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330894720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.204 kcal (2) G-P(sol) polarization free energy of solvation -36.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds