Wall clock time and date at job start Tue Mar 31 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48505 * 109.47216 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46975 * 120.00108 * 3 2 1 6 6 H 1.48499 * 109.47526 * 240.00270 * 3 2 1 7 7 C 1.40042 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00378 * 4.67208 * 7 2 1 9 9 C 1.46373 * 119.99893 * 184.67122 * 7 2 1 10 10 O 1.21686 * 120.00338 * 6.24667 * 9 7 2 11 11 N 1.34786 * 119.99966 * 186.24264 * 9 7 2 12 12 C 1.46503 * 119.99926 * 179.97438 * 11 9 7 13 13 H 1.09001 * 110.43242 * 34.29891 * 12 11 9 14 14 C 1.54626 * 110.48529 * 156.84529 * 12 11 9 15 15 C 1.54681 * 101.66980 * 143.39454 * 14 12 11 16 16 N 1.46758 * 105.53534 * 334.73891 * 15 14 12 17 17 C 1.46506 * 124.35032 * 196.94274 * 16 15 14 18 18 C 1.52997 * 109.47113 * 269.95398 * 17 16 15 19 19 F 1.39895 * 109.47480 * 59.99999 * 18 17 16 20 20 F 1.39905 * 109.47180 * 180.02562 * 18 17 16 21 21 F 1.39905 * 109.46883 * 299.99605 * 18 17 16 22 22 C 1.34424 * 111.30170 * 16.92516 * 16 15 14 23 23 O 1.21275 * 124.94391 * 179.56071 * 22 16 15 24 24 H 0.96993 * 120.00036 * 174.89669 * 1 2 3 25 25 H 0.96996 * 119.99987 * 0.02562 * 11 9 7 26 26 H 1.09001 * 110.96396 * 261.59883 * 14 12 11 27 27 H 1.09000 * 110.96903 * 25.35060 * 14 12 11 28 28 H 1.08999 * 110.29618 * 215.67607 * 15 14 12 29 29 H 1.09006 * 110.13969 * 93.72198 * 15 14 12 30 30 H 1.08998 * 109.46839 * 29.95725 * 17 16 15 31 31 H 1.09003 * 109.46906 * 149.95096 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6964 1.2125 6 1 3.0944 1.6966 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 1.4697 -2.1466 -0.0771 9 6 3.4670 -1.2149 0.1027 10 8 4.0644 -0.1739 0.3030 11 7 4.1499 -2.3701 -0.0241 12 6 5.6113 -2.3721 0.0787 13 1 5.9432 -1.6243 0.7989 14 6 6.1236 -3.7748 0.4799 15 6 7.4327 -3.8755 -0.3379 16 7 7.2504 -2.9770 -1.4838 17 6 8.0670 -3.0118 -2.6997 18 6 9.2708 -2.0824 -2.5323 19 9 10.0389 -2.5058 -1.4424 20 9 10.0503 -2.1152 -3.6936 21 9 8.8235 -0.7758 -2.3082 22 6 6.2376 -2.1182 -1.2748 23 8 5.8785 -1.2639 -2.0570 24 1 -0.4850 -0.8366 -0.0747 25 1 3.6738 -3.1999 -0.1840 26 1 6.3247 -3.8251 1.5500 27 1 5.4166 -4.5486 0.1807 28 1 7.5862 -4.8985 -0.6813 29 1 8.2789 -3.5489 0.2667 30 1 8.4153 -4.0297 -2.8744 31 1 7.4685 -2.6819 -3.5489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330894720.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:39 Heat of formation + Delta-G solvation = -263.251979 kcal Electronic energy + Delta-G solvation = -22605.716105 eV Core-core repulsion = 18470.421982 eV Total energy + Delta-G solvation = -4135.294123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.14385 -48.67711 -48.64543 -41.73648 -39.59433 -37.64758 -35.77342 -35.05966 -33.02738 -29.58814 -28.86829 -27.22859 -24.69516 -22.95572 -22.21560 -20.81741 -20.19147 -19.59671 -19.52543 -18.83808 -17.96489 -17.41354 -17.16696 -16.95983 -15.85661 -15.61558 -15.58066 -15.53963 -15.18686 -15.08801 -14.82856 -14.80073 -14.74869 -14.56167 -14.44634 -14.17586 -13.67547 -13.51323 -13.13622 -12.87804 -12.64184 -12.40868 -12.01962 -11.44120 -11.35426 -11.20148 -10.16463 -10.03972 -9.75151 -9.22353 -7.15486 1.22521 1.38165 1.49854 1.53043 1.86576 1.92772 2.19310 2.38810 2.76444 2.85156 2.94377 3.18281 3.22721 3.50466 3.51362 3.93750 4.05723 4.08981 4.22201 4.50115 4.66083 4.99369 5.06619 5.28570 5.40888 5.50750 5.72788 5.88303 5.93311 6.61237 6.98313 7.09536 7.97882 8.10743 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.005062 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.211570 B = 5530.271384 C = 6077.856143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.034 3.966 3 Si 1.156 2.844 4 H -0.304 1.304 5 H -0.292 1.292 6 H -0.309 1.309 7 C -0.613 4.613 8 H 0.074 0.926 9 C 0.551 3.449 10 O -0.637 6.637 11 N -0.723 5.723 12 C 0.113 3.887 13 H 0.096 0.904 14 C -0.118 4.118 15 C 0.104 3.896 16 N -0.619 5.619 17 C 0.090 3.910 18 C 0.428 3.572 19 F -0.180 7.180 20 F -0.181 7.181 21 F -0.203 7.203 22 C 0.494 3.506 23 O -0.552 6.552 24 H 0.280 0.720 25 H 0.406 0.594 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.179 0.821 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.225 -15.844 -2.185 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.181 4.181 3 Si 0.989 3.011 4 H -0.234 1.234 5 H -0.220 1.220 6 H -0.238 1.238 7 C -0.649 4.649 8 H 0.092 0.908 9 C 0.358 3.642 10 O -0.531 6.531 11 N -0.374 5.374 12 C 0.003 3.997 13 H 0.114 0.886 14 C -0.156 4.156 15 C -0.017 4.017 16 N -0.354 5.354 17 C -0.035 4.035 18 C 0.372 3.628 19 F -0.161 7.161 20 F -0.162 7.162 21 F -0.184 7.184 22 C 0.280 3.720 23 O -0.427 6.427 24 H 0.091 0.909 25 H 0.242 0.758 26 H 0.142 0.858 27 H 0.127 0.873 28 H 0.150 0.850 29 H 0.110 0.890 30 H 0.196 0.804 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 19.231 -13.161 -2.430 23.430 hybrid contribution -0.074 -1.490 -0.362 1.535 sum 19.158 -14.651 -2.792 24.279 Atomic orbital electron populations 1.70647 1.07616 1.32264 1.37021 1.27576 0.95736 1.06392 0.88441 0.82014 0.70708 0.70631 0.77792 1.23418 1.21994 1.23818 1.22202 0.91019 0.96277 1.55450 0.90827 1.18411 0.88553 0.82405 0.74859 1.90143 1.71019 1.32625 1.59292 1.45291 1.04343 1.10258 1.77523 1.21552 0.82504 1.02182 0.93443 0.88605 1.23014 0.96865 0.92282 1.03390 1.22607 0.98122 0.95733 0.85249 1.48232 1.32075 1.36559 1.18542 1.22730 0.88627 1.02569 0.89574 1.21716 0.86269 0.80933 0.73857 1.93170 1.77907 1.89523 1.55526 1.93188 1.77236 1.96442 1.49340 1.93226 1.89288 1.41323 1.94597 1.22200 0.80182 0.79705 0.89866 1.90737 1.65238 1.34734 1.51999 0.90931 0.75775 0.85792 0.87288 0.84995 0.89039 0.80356 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.86 13.64 21.83 0.30 -49.56 16 2 C 0.03 2.00 5.52 85.30 0.47 2.47 16 3 Si 1.16 64.66 25.99 68.60 1.78 66.45 16 4 H -0.30 -15.79 7.11 99.48 0.71 -15.09 16 5 H -0.29 -16.71 6.78 99.48 0.67 -16.03 16 6 H -0.31 -18.34 7.11 99.48 0.71 -17.63 16 7 C -0.61 -35.27 9.96 24.83 0.25 -35.02 16 8 H 0.07 4.08 8.05 -2.91 -0.02 4.06 16 9 C 0.55 29.92 7.57 86.36 0.65 30.58 16 10 O -0.64 -38.55 11.75 -4.30 -0.05 -38.61 16 11 N -0.72 -29.13 5.14 -446.85 -2.30 -31.43 16 12 C 0.11 3.67 3.25 44.98 0.15 3.81 16 13 H 0.10 3.57 7.61 -2.39 -0.02 3.55 16 14 C -0.12 -1.83 6.89 31.72 0.22 -1.61 16 15 C 0.10 1.21 7.23 86.90 0.63 1.84 16 16 N -0.62 -13.42 2.81 -817.58 -2.29 -15.72 16 17 C 0.09 1.50 5.91 86.38 0.51 2.01 16 18 C 0.43 9.22 3.29 71.98 0.24 9.45 16 19 F -0.18 -3.54 17.10 44.97 0.77 -2.77 16 20 F -0.18 -3.67 17.32 44.97 0.78 -2.89 16 21 F -0.20 -6.46 16.95 44.97 0.76 -5.70 16 22 C 0.49 17.41 7.36 87.90 0.65 18.06 16 23 O -0.55 -26.52 17.59 -3.02 -0.05 -26.57 16 24 H 0.28 15.72 8.72 -92.71 -0.81 14.91 16 25 H 0.41 13.71 8.38 -92.71 -0.78 12.93 16 26 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.11 1.32 7.81 -2.39 -0.02 1.30 16 28 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.09 0.91 8.13 -2.38 -0.02 0.89 16 30 H 0.18 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 2.25 7.93 -2.39 -0.02 2.23 16 Total: -1.00 -85.12 287.30 3.80 -81.32 By element: Atomic # 1 Polarization: -6.48 SS G_CDS: 0.35 Total: -6.14 kcal Atomic # 6 Polarization: 27.84 SS G_CDS: 3.76 Total: 31.60 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -4.29 Total: -96.70 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -0.10 Total: -65.17 kcal Atomic # 9 Polarization: -13.66 SS G_CDS: 2.31 Total: -11.35 kcal Atomic # 14 Polarization: 64.66 SS G_CDS: 1.78 Total: 66.45 kcal Total: -85.12 3.80 -81.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330894720.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.931 kcal (2) G-P(sol) polarization free energy of solvation -85.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds