Wall clock time and date at job start Tue Mar 31 2020 01:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48492 * 109.47475 * 269.72792 * 3 2 1 5 5 H 1.48501 * 109.47030 * 29.73248 * 3 2 1 6 6 H 1.48502 * 109.46861 * 149.72718 * 3 2 1 7 7 C 1.40050 * 120.00027 * 179.73307 * 2 1 3 8 8 H 1.07995 * 119.99944 * 346.67064 * 7 2 1 9 9 C 1.46380 * 119.99757 * 166.67392 * 7 2 1 10 10 O 1.21684 * 120.00137 * 350.81519 * 9 7 2 11 11 N 1.34778 * 119.99787 * 170.80715 * 9 7 2 12 12 C 1.46501 * 120.00187 * 179.97438 * 11 9 7 13 13 H 1.09002 * 110.43347 * 323.91639 * 12 11 9 14 14 C 1.54630 * 110.48756 * 201.23089 * 12 11 9 15 15 C 1.54485 * 101.76311 * 266.11991 * 14 12 11 16 16 N 1.46768 * 105.47383 * 334.58500 * 15 14 12 17 17 C 1.46498 * 124.34610 * 196.99222 * 16 15 14 18 18 C 1.52996 * 109.47395 * 270.00266 * 17 16 15 19 19 F 1.39901 * 109.47155 * 60.00025 * 18 17 16 20 20 F 1.39898 * 109.46982 * 180.02562 * 18 17 16 21 21 F 1.39904 * 109.46930 * 300.00145 * 18 17 16 22 22 C 1.34419 * 111.29772 * 17.01773 * 16 15 14 23 23 O 1.21283 * 124.93595 * 179.55599 * 22 16 15 24 24 H 0.97000 * 119.99625 * 181.97875 * 1 2 3 25 25 H 0.97005 * 119.99630 * 0.02562 * 11 9 7 26 26 H 1.08999 * 110.96476 * 24.23663 * 14 12 11 27 27 H 1.08995 * 110.96724 * 147.99923 * 14 12 11 28 28 H 1.08996 * 110.24469 * 215.58421 * 15 14 12 29 29 H 1.08997 * 110.24283 * 93.58656 * 15 14 12 30 30 H 1.09004 * 109.47227 * 30.00675 * 17 16 15 31 31 H 1.08996 * 109.46660 * 149.99839 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4939 2.0432 -1.4000 5 1 1.4352 2.6543 0.6944 6 1 3.5353 1.4419 0.7058 7 6 2.0069 -1.2128 0.0057 8 1 1.4888 -2.1345 0.2256 9 6 3.4412 -1.2312 -0.2865 10 8 3.9916 -0.2263 -0.6962 11 7 4.1521 -2.3612 -0.1015 12 6 5.5874 -2.3798 -0.3943 13 1 5.8068 -1.7582 -1.2625 14 6 6.0737 -3.8292 -0.6262 15 6 6.5666 -4.2253 0.7834 16 7 6.9201 -2.9631 1.4436 17 6 7.7551 -2.8634 2.6432 18 6 6.8690 -2.9320 3.8886 19 9 6.1768 -4.1478 3.9020 20 9 7.6663 -2.8362 5.0341 21 9 5.9534 -1.8744 3.8684 22 6 6.3789 -1.9105 0.8065 23 8 6.5060 -0.7530 1.1454 24 1 -0.4849 -0.8396 0.0290 25 1 3.7132 -3.1623 0.2249 26 1 5.2520 -4.4698 -0.9464 27 1 6.8909 -3.8559 -1.3469 28 1 7.4420 -4.8704 0.7094 29 1 5.7715 -4.7288 1.3332 30 1 8.4684 -3.6874 2.6590 31 1 8.2944 -1.9162 2.6327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330894721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:41 Heat of formation + Delta-G solvation = -261.770042 kcal Electronic energy + Delta-G solvation = -22926.033450 eV Core-core repulsion = 18790.803589 eV Total energy + Delta-G solvation = -4135.229861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.14748 -48.68311 -48.65392 -41.76524 -39.55633 -37.68286 -35.71119 -35.06064 -32.94216 -29.60446 -28.86474 -27.31124 -24.70283 -22.92863 -22.16518 -20.92953 -20.19532 -19.60202 -19.54009 -18.79643 -17.92079 -17.51589 -17.19153 -16.44874 -15.94857 -15.93607 -15.60103 -15.53703 -15.10180 -15.09123 -14.83895 -14.80580 -14.70878 -14.59889 -14.46917 -14.18635 -13.65743 -13.44350 -13.34298 -12.79849 -12.38952 -12.32955 -12.23705 -11.53494 -11.29248 -11.13518 -10.18895 -10.05465 -9.74999 -9.24929 -7.14723 1.13395 1.39298 1.48441 1.60739 1.81564 1.91407 2.15412 2.36056 2.76009 2.92822 2.94152 3.17718 3.22828 3.45214 3.50485 3.89400 4.06366 4.17547 4.23303 4.57068 4.67021 4.99206 5.06168 5.29240 5.42207 5.50835 5.74274 5.88529 5.92710 6.60475 6.96840 7.09516 7.99122 8.08395 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.006094 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.865317 B = 4593.464055 C = 5025.088400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.037 3.963 3 Si 1.144 2.856 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.303 1.303 7 C -0.617 4.617 8 H 0.073 0.927 9 C 0.547 3.453 10 O -0.632 6.632 11 N -0.723 5.723 12 C 0.114 3.886 13 H 0.091 0.909 14 C -0.119 4.119 15 C 0.098 3.902 16 N -0.617 5.617 17 C 0.091 3.909 18 C 0.424 3.576 19 F -0.182 7.182 20 F -0.180 7.180 21 F -0.205 7.205 22 C 0.497 3.503 23 O -0.554 6.554 24 H 0.281 0.719 25 H 0.405 0.595 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.181 0.819 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.602 -16.102 3.767 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.179 4.179 3 Si 0.975 3.025 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.232 1.232 7 C -0.653 4.653 8 H 0.091 0.909 9 C 0.353 3.647 10 O -0.525 6.525 11 N -0.377 5.377 12 C 0.004 3.996 13 H 0.109 0.891 14 C -0.157 4.157 15 C -0.022 4.022 16 N -0.351 5.351 17 C -0.034 4.034 18 C 0.368 3.632 19 F -0.164 7.164 20 F -0.162 7.162 21 F -0.187 7.187 22 C 0.283 3.717 23 O -0.428 6.428 24 H 0.091 0.909 25 H 0.241 0.759 26 H 0.136 0.864 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.099 0.901 30 H 0.199 0.801 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.808 -13.275 3.701 22.518 hybrid contribution -0.734 -1.744 0.718 2.023 sum 17.075 -15.018 4.419 23.165 Atomic orbital electron populations 1.70635 1.07730 1.32156 1.36671 1.27522 0.95658 1.06297 0.88447 0.82260 0.71937 0.70792 0.77546 1.21345 1.22996 1.23163 1.22152 0.93101 0.96964 1.53096 0.90879 1.18398 0.87696 0.81860 0.76748 1.90246 1.72977 1.34568 1.54693 1.45350 1.06276 1.14232 1.71825 1.21512 0.81909 1.01158 0.94995 0.89089 1.22990 1.04055 0.90980 0.97668 1.22608 1.03579 0.83986 0.92018 1.48272 1.50916 1.09311 1.26648 1.22753 0.91439 1.10513 0.78651 1.21861 0.80702 0.73144 0.87478 1.93168 1.81305 1.45018 1.96869 1.93181 1.73234 1.95907 1.53864 1.93240 1.69962 1.58669 1.96790 1.22200 0.78543 0.84756 0.86216 1.90726 1.60566 1.21152 1.70381 0.90867 0.75882 0.86367 0.85624 0.84624 0.90115 0.80150 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.68 13.65 21.84 0.30 -49.38 16 2 C 0.04 2.18 5.52 85.31 0.47 2.65 16 3 Si 1.14 63.87 26.37 68.60 1.81 65.68 16 4 H -0.29 -15.80 7.11 99.48 0.71 -15.10 16 5 H -0.30 -15.58 7.11 99.48 0.71 -14.88 16 6 H -0.30 -18.54 6.52 99.48 0.65 -17.89 16 7 C -0.62 -35.55 9.92 24.83 0.25 -35.30 16 8 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 9 C 0.55 29.77 7.46 86.36 0.64 30.41 16 10 O -0.63 -38.43 12.02 -4.30 -0.05 -38.48 16 11 N -0.72 -29.24 5.12 -446.85 -2.29 -31.53 16 12 C 0.11 3.72 3.23 44.98 0.15 3.86 16 13 H 0.09 3.41 7.66 -2.39 -0.02 3.39 16 14 C -0.12 -1.85 6.78 31.65 0.21 -1.64 16 15 C 0.10 1.27 7.22 86.83 0.63 1.89 16 16 N -0.62 -13.91 2.81 -817.99 -2.30 -16.21 16 17 C 0.09 1.60 5.91 86.38 0.51 2.11 16 18 C 0.42 10.18 3.29 71.98 0.24 10.42 16 19 F -0.18 -4.17 17.09 44.97 0.77 -3.40 16 20 F -0.18 -4.00 17.32 44.97 0.78 -3.22 16 21 F -0.20 -7.34 16.95 44.97 0.76 -6.58 16 22 C 0.50 17.74 7.35 87.90 0.65 18.38 16 23 O -0.55 -26.60 17.60 -3.04 -0.05 -26.65 16 24 H 0.28 15.78 8.72 -92.71 -0.81 14.98 16 25 H 0.41 13.81 8.55 -92.70 -0.79 13.02 16 26 H 0.12 1.48 8.03 -2.39 -0.02 1.46 16 27 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 1.04 8.12 -2.39 -0.02 1.03 16 30 H 0.18 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.12 2.30 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -85.72 287.81 3.77 -81.95 By element: Atomic # 1 Polarization: -5.27 SS G_CDS: 0.30 Total: -4.97 kcal Atomic # 6 Polarization: 29.05 SS G_CDS: 3.74 Total: 32.79 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -4.29 Total: -97.12 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: -0.11 Total: -65.13 kcal Atomic # 9 Polarization: -15.51 SS G_CDS: 2.31 Total: -13.20 kcal Atomic # 14 Polarization: 63.87 SS G_CDS: 1.81 Total: 65.68 kcal Total: -85.72 3.77 -81.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330894721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.822 kcal (2) G-P(sol) polarization free energy of solvation -85.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds