Wall clock time and date at job start Tue Mar 31 2020 01:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00143 * 2 1 4 4 H 1.48500 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47011 * 299.99962 * 3 2 1 6 6 H 1.48504 * 109.47185 * 59.99819 * 3 2 1 7 7 C 1.38952 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99808 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99633 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00007 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99743 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00031 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47010 * 179.97438 * 12 10 9 14 14 C 1.48055 * 111.00253 * 169.99641 * 13 12 10 15 15 C 1.51181 * 105.74235 * 268.28350 * 14 13 12 16 16 C 1.38193 * 131.77104 * 162.47711 * 15 14 13 17 17 C 1.38217 * 120.05957 * 179.97438 * 16 15 14 18 18 C 1.38245 * 120.01981 * 0.02562 * 17 16 15 19 19 C 1.38337 * 119.98300 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 119.99616 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.00257 * 359.97438 * 19 18 17 22 22 C 1.48258 * 111.02994 * 55.09849 * 13 12 10 23 23 H 0.96998 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00432 * 0.02562 * 9 7 2 25 25 H 1.08997 * 109.47476 * 59.99897 * 12 10 9 26 26 H 1.09004 * 109.47010 * 299.98935 * 12 10 9 27 27 H 1.09002 * 110.21058 * 149.18915 * 14 13 12 28 28 H 1.08995 * 110.20579 * 27.37291 * 14 13 12 29 29 H 1.07996 * 119.96878 * 359.97438 * 16 15 14 30 30 H 1.08003 * 119.99340 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.00676 * 180.02562 * 18 17 16 32 32 H 1.09000 * 110.18966 * 332.66282 * 22 13 12 33 33 H 1.09000 * 110.28105 * 210.80877 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 1.5083 -7.2673 0.2413 15 6 1.5462 -7.4809 1.7375 16 6 0.8163 -8.3100 2.5678 17 6 1.0556 -8.3112 3.9291 18 6 2.0253 -7.4823 4.4617 19 6 2.7568 -6.6518 3.6316 20 17 3.9752 -5.6113 4.2999 21 6 2.5182 -6.6513 2.2694 22 6 3.1449 -5.8694 1.1374 23 1 -0.4849 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0002 25 1 0.6180 -4.9209 -0.8896 26 1 0.6161 -4.9205 0.8904 27 1 2.0327 -8.0759 -0.2679 28 1 0.4763 -7.2117 -0.1050 29 1 0.0582 -8.9575 2.1527 30 1 0.4847 -8.9600 4.5771 31 1 2.2124 -7.4838 5.5253 32 1 3.2686 -4.8251 1.4241 33 1 4.1086 -6.3024 0.8693 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334321609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:10 Heat of formation + Delta-G solvation = 3.200545 kcal Electronic energy + Delta-G solvation = -19199.103236 eV Core-core repulsion = 16057.929266 eV Total energy + Delta-G solvation = -3141.173969 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61110 -38.34951 -36.73382 -36.07429 -33.94698 -31.43634 -31.17123 -30.91166 -27.54135 -27.26710 -24.69387 -22.62407 -21.41594 -21.21309 -19.22338 -17.88105 -16.74269 -16.23416 -15.84603 -15.41192 -15.17229 -14.57041 -14.26687 -13.88579 -13.76519 -13.48565 -13.29401 -13.03825 -12.36122 -12.18090 -11.74984 -11.64442 -11.53597 -11.46814 -11.21250 -11.15423 -10.95504 -10.70847 -10.34589 -10.24256 -9.51087 -8.80880 -8.67888 -8.39303 -8.25898 -7.96416 -6.43985 -3.84677 1.09193 1.16088 2.21530 3.15409 3.26581 3.33848 3.50883 3.84504 4.01305 4.21683 4.31276 4.70424 4.83151 4.99405 5.15185 5.21678 5.25895 5.35716 5.46410 5.67524 5.74665 5.79519 5.93174 6.03479 6.12887 6.19429 6.22223 6.26917 6.55122 6.71104 6.97369 7.15638 7.53882 8.03342 8.57434 9.14956 9.50433 10.00738 10.73655 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021262 B = 0.004764 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.608481 B = 5875.761919 C = 6466.994253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.105 0.895 9 N -0.559 5.559 10 C 0.440 3.560 11 O -0.578 6.578 12 C 0.029 3.971 13 N -0.476 5.476 14 C 0.075 3.925 15 C -0.118 4.118 16 C -0.097 4.097 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.016 4.016 20 Cl -0.067 7.067 21 C -0.108 4.108 22 C 0.070 3.930 23 H 0.271 0.729 24 H 0.393 0.607 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.891 -15.934 6.400 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.123 0.877 9 N -0.194 5.194 10 C 0.226 3.774 11 O -0.463 6.463 12 C -0.102 4.102 13 N -0.196 5.196 14 C -0.053 4.053 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.043 4.043 20 Cl -0.038 7.038 21 C -0.110 4.110 22 C -0.058 4.058 23 H 0.081 0.919 24 H 0.226 0.774 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.171 -15.607 5.881 16.679 hybrid contribution -0.709 0.882 0.974 1.493 sum -0.538 -14.725 6.855 16.252 Atomic orbital electron populations 1.69621 1.05980 1.28138 1.50386 1.25274 0.95624 0.99775 0.97171 0.85801 0.79764 0.81076 0.77728 1.19148 1.20698 1.20737 1.19765 0.93440 0.82106 1.47532 0.87733 1.41870 1.09255 1.04601 1.63721 1.19641 0.88363 0.84614 0.84820 1.90488 1.13603 1.86740 1.55500 1.22140 0.94781 0.91416 1.01893 1.65048 1.13963 1.00272 1.40346 1.21886 1.00141 0.93886 0.89380 1.21307 0.96473 0.96697 0.97530 1.20568 0.99321 0.98756 0.92956 1.20990 0.97974 0.99308 0.95008 1.20994 0.96307 0.96126 0.99723 1.20396 0.95167 0.96781 0.91988 1.98383 1.54028 1.65886 1.85505 1.21386 0.97536 0.98540 0.93537 1.22175 0.95924 1.03020 0.84644 0.91865 0.77419 0.88684 0.93095 0.88205 0.89883 0.85576 0.85059 0.84925 0.85914 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.16 5.29 -10.96 -0.06 -14.21 16 10 C 0.44 10.37 7.20 -10.99 -0.08 10.29 16 11 O -0.58 -15.33 13.41 5.54 0.07 -15.25 16 12 C 0.03 0.53 5.34 -4.98 -0.03 0.51 16 13 N -0.48 -8.11 5.46 -236.17 -1.29 -9.40 16 14 C 0.08 0.97 6.61 -4.10 -0.03 0.95 16 15 C -0.12 -1.57 6.12 -104.34 -0.64 -2.21 16 16 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16 17 C -0.11 -1.18 10.05 -39.59 -0.40 -1.58 16 18 C -0.11 -1.34 9.83 -39.54 -0.39 -1.73 16 19 C -0.02 -0.24 6.32 -39.52 -0.25 -0.49 16 20 Cl -0.07 -1.00 28.79 -51.86 -1.49 -2.49 16 21 C -0.11 -1.67 6.08 -104.30 -0.63 -2.30 16 22 C 0.07 1.24 5.57 -3.99 -0.02 1.21 16 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 25 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.05 0.89 7.99 -51.93 -0.42 0.47 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 0.92 7.80 -51.93 -0.41 0.52 16 29 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 2.62 5.18 -51.93 -0.27 2.35 16 33 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -30.64 298.15 -9.13 -39.77 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -3.46 Total: 9.53 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.10 Total: -4.73 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.62 Total: -47.35 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.07 Total: -15.25 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.49 Total: -2.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.64 -9.13 -39.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334321609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.973 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds