Wall clock time and date at job start Tue Mar 31 2020 01:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00143 * 2 1 4 4 H 1.48500 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47011 * 299.99962 * 3 2 1 6 6 H 1.48504 * 109.47185 * 59.99819 * 3 2 1 7 7 C 1.38952 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99808 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99633 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00007 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99743 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00031 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47010 * 179.97438 * 12 10 9 14 14 C 1.48055 * 111.00253 * 169.99641 * 13 12 10 15 15 C 1.51181 * 105.74235 * 268.28350 * 14 13 12 16 16 C 1.38193 * 131.77104 * 162.47711 * 15 14 13 17 17 C 1.38217 * 120.05957 * 179.97438 * 16 15 14 18 18 C 1.38245 * 120.01981 * 0.02562 * 17 16 15 19 19 C 1.38337 * 119.98300 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 119.99616 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.00257 * 359.97438 * 19 18 17 22 22 C 1.48258 * 111.02994 * 55.09849 * 13 12 10 23 23 H 0.96998 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00432 * 0.02562 * 9 7 2 25 25 H 1.08997 * 109.47476 * 59.99897 * 12 10 9 26 26 H 1.09004 * 109.47010 * 299.98935 * 12 10 9 27 27 H 1.09002 * 110.21058 * 149.18915 * 14 13 12 28 28 H 1.08995 * 110.20579 * 27.37291 * 14 13 12 29 29 H 1.07996 * 119.96878 * 359.97438 * 16 15 14 30 30 H 1.08003 * 119.99340 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.00676 * 180.02562 * 18 17 16 32 32 H 1.09000 * 110.18966 * 332.66282 * 22 13 12 33 33 H 1.09000 * 110.28105 * 210.80877 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 1.5083 -7.2673 0.2413 15 6 1.5462 -7.4809 1.7375 16 6 0.8163 -8.3100 2.5678 17 6 1.0556 -8.3112 3.9291 18 6 2.0253 -7.4823 4.4617 19 6 2.7568 -6.6518 3.6316 20 17 3.9752 -5.6113 4.2999 21 6 2.5182 -6.6513 2.2694 22 6 3.1449 -5.8694 1.1374 23 1 -0.4849 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0002 25 1 0.6180 -4.9209 -0.8896 26 1 0.6161 -4.9205 0.8904 27 1 2.0327 -8.0759 -0.2679 28 1 0.4763 -7.2117 -0.1050 29 1 0.0582 -8.9575 2.1527 30 1 0.4847 -8.9600 4.5771 31 1 2.2124 -7.4838 5.5253 32 1 3.2686 -4.8251 1.4241 33 1 4.1086 -6.3024 0.8693 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334321609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:09 Heat of formation + Delta-G solvation = -17.967050 kcal Electronic energy + Delta-G solvation = -19200.021132 eV Core-core repulsion = 16057.929266 eV Total energy + Delta-G solvation = -3142.091865 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76717 -40.03069 -37.97366 -37.20944 -35.94250 -33.36426 -32.22017 -32.16657 -28.89129 -28.47304 -26.54497 -23.84341 -22.46425 -22.29824 -21.04796 -19.88768 -17.95643 -17.65062 -17.08947 -16.76280 -16.59680 -16.13354 -15.83488 -15.36830 -15.07830 -14.81455 -14.50611 -14.23928 -13.75972 -13.57823 -13.47507 -13.11660 -12.90305 -12.75185 -12.64625 -12.42730 -12.23082 -12.14497 -12.08745 -11.80891 -11.46688 -10.28748 -10.03084 -9.78529 -9.66127 -9.56965 -8.48893 -5.97314 0.14623 0.20093 1.15736 1.34660 1.40456 1.54592 1.99634 2.26945 2.58016 2.77173 3.15002 3.19060 3.45154 3.65256 4.02188 4.12999 4.26221 4.29720 4.37958 4.45947 4.52311 4.59374 4.67167 4.80820 4.89939 5.01664 5.19424 5.34506 5.39039 5.41771 5.68311 5.80955 5.84455 6.02998 6.56683 7.09944 7.51796 8.06727 8.68835 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021262 B = 0.004764 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.608481 B = 5875.761919 C = 6466.994253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.570 5.570 10 C 0.437 3.563 11 O -0.612 6.612 12 C 0.045 3.955 13 N -0.493 5.493 14 C 0.077 3.923 15 C -0.121 4.121 16 C -0.090 4.090 17 C -0.101 4.101 18 C -0.117 4.117 19 C -0.036 4.036 20 Cl -0.087 7.087 21 C -0.139 4.139 22 C 0.077 3.923 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.122 0.878 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.079 0.921 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 -17.819 6.880 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.207 5.207 10 C 0.225 3.775 11 O -0.499 6.499 12 C -0.087 4.087 13 N -0.214 5.214 14 C -0.050 4.050 15 C -0.123 4.123 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.135 4.135 19 C -0.063 4.063 20 Cl -0.058 7.058 21 C -0.141 4.141 22 C -0.051 4.051 23 H 0.088 0.912 24 H 0.230 0.770 25 H 0.140 0.860 26 H 0.080 0.920 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.181 0.819 30 H 0.189 0.811 31 H 0.169 0.831 32 H 0.097 0.903 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.873 -17.514 6.361 18.727 hybrid contribution -0.087 1.337 0.863 1.594 sum -1.960 -16.176 7.225 17.824 Atomic orbital electron populations 1.69675 1.06818 1.29281 1.50249 1.26022 0.96523 1.02347 0.96184 0.84894 0.78027 0.77167 0.78397 1.19885 1.19387 1.19624 1.19688 0.92677 0.83909 1.49856 0.90325 1.41922 1.09326 1.04685 1.64727 1.20644 0.88299 0.85999 0.82559 1.90473 1.15565 1.87611 1.56273 1.22016 0.94385 0.88728 1.03531 1.65041 1.14300 1.01607 1.40408 1.22010 1.01397 0.91910 0.89674 1.21437 0.96221 0.96917 0.97709 1.21009 0.98986 0.97901 0.92921 1.21503 0.96727 0.98282 0.95413 1.21335 0.96112 0.95566 1.00499 1.20684 0.95758 0.97677 0.92195 1.98369 1.55058 1.66758 1.85633 1.21233 0.99305 1.00138 0.93447 1.21802 0.96337 1.00702 0.86269 0.91241 0.76990 0.86040 0.91989 0.86450 0.87324 0.81898 0.81077 0.83050 0.90334 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -29.76 5.29 -306.98 -1.62 -31.38 16 10 C 0.44 21.30 7.20 87.66 0.63 21.93 16 11 O -0.61 -34.23 13.41 -3.08 -0.04 -34.27 16 12 C 0.04 1.60 5.34 85.56 0.46 2.06 16 13 N -0.49 -16.55 5.46 -901.12 -4.92 -21.48 16 14 C 0.08 1.79 6.61 85.49 0.57 2.36 16 15 C -0.12 -2.91 6.12 -19.68 -0.12 -3.03 16 16 C -0.09 -1.55 10.04 22.25 0.22 -1.33 16 17 C -0.10 -1.64 10.05 22.27 0.22 -1.41 16 18 C -0.12 -2.48 9.83 22.29 0.22 -2.26 16 19 C -0.04 -1.04 6.32 22.31 0.14 -0.90 16 20 Cl -0.09 -2.70 28.79 -2.72 -0.08 -2.78 16 21 C -0.14 -4.26 6.08 -19.65 -0.12 -4.38 16 22 C 0.08 2.83 5.57 85.45 0.48 3.31 16 23 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 24 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 25 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 26 H 0.06 2.09 7.99 -2.39 -0.02 2.07 16 27 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.11 1.97 7.80 -2.39 -0.02 1.95 16 29 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.08 3.59 5.18 -2.39 -0.01 3.58 16 33 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -69.58 298.15 0.04 -69.53 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.42 Total: 26.60 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 3.98 Total: -2.07 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -6.26 Total: -102.56 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.04 Total: -34.27 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -0.08 Total: -2.78 kcal Total: -69.58 0.04 -69.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334321609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.567 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds