Wall clock time and date at job start Tue Mar 31 2020 01:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 119.99521 * 2 1 4 4 H 1.48497 * 109.47099 * 240.00237 * 3 2 1 5 5 H 1.48496 * 109.47392 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47163 * 120.00406 * 3 2 1 7 7 C 1.38948 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00150 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00131 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99897 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00389 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47251 * 185.77999 * 12 10 9 14 14 C 1.47913 * 111.00038 * 75.78166 * 13 12 10 15 15 C 1.54597 * 102.62428 * 94.46966 * 14 13 12 16 16 C 1.51581 * 102.90824 * 25.32061 * 15 14 13 17 17 C 1.37926 * 131.53637 * 163.34689 * 16 15 14 18 18 C 1.38395 * 120.06887 * 181.02474 * 17 16 15 19 19 Cl 1.73602 * 120.07149 * 180.21725 * 18 17 16 20 20 C 1.38398 * 119.85792 * 0.23590 * 18 17 16 21 21 C 1.37910 * 120.25348 * 359.85211 * 20 18 17 22 22 C 1.38955 * 107.96149 * 344.47018 * 16 15 14 23 23 H 0.96997 * 120.00446 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99544 * 359.97438 * 9 7 2 25 25 H 1.08999 * 109.47045 * 65.77375 * 12 10 9 26 26 H 1.09003 * 109.46461 * 305.77418 * 12 10 9 27 27 H 1.09003 * 110.77433 * 212.75428 * 14 13 12 28 28 H 1.09001 * 110.78003 * 336.18812 * 14 13 12 29 29 H 1.09000 * 110.73579 * 143.85664 * 15 14 13 30 30 H 1.08998 * 110.73704 * 266.99479 * 15 14 13 31 31 H 1.07992 * 119.96654 * 1.29262 * 17 16 15 32 32 H 1.08010 * 119.87493 * 179.87638 * 20 18 17 33 33 H 1.08001 * 119.89477 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1926 -5.9759 0.1385 14 6 2.6748 -6.0897 1.5321 15 6 1.7133 -7.1379 2.1379 16 6 1.2646 -7.9272 0.9241 17 6 0.6565 -9.1597 0.8082 18 6 0.3641 -9.6738 -0.4430 19 17 -0.4064 -11.2226 -0.5888 20 6 0.6875 -8.9506 -1.5779 21 6 1.2972 -7.7186 -1.4664 22 6 1.5927 -7.1935 -0.2095 23 1 -0.4850 0.8400 -0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6976 -4.9666 -0.9385 26 1 0.5418 -4.8774 0.8324 27 1 3.7038 -6.4487 1.5571 28 1 2.5842 -5.1359 2.0518 29 1 2.2381 -7.7792 2.8460 30 1 0.8637 -6.6511 2.6165 31 1 0.4044 -9.7223 1.6948 32 1 0.4612 -9.3524 -2.5546 33 1 1.5467 -7.1590 -2.3558 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334431326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:05 Heat of formation + Delta-G solvation = -19.464618 kcal Electronic energy + Delta-G solvation = -18847.899721 eV Core-core repulsion = 15705.742916 eV Total energy + Delta-G solvation = -3142.156805 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.95744 -39.93970 -38.21054 -36.86732 -35.91150 -33.55616 -33.19669 -30.98904 -29.96864 -28.27117 -26.20048 -24.18497 -22.43591 -22.31017 -20.94732 -19.89525 -18.02956 -17.63745 -17.39971 -16.78763 -16.64829 -16.06938 -15.91337 -15.49299 -14.85739 -14.81467 -14.34146 -14.32008 -13.77714 -13.62710 -13.51919 -13.11490 -13.02770 -12.78953 -12.58101 -12.43795 -12.31912 -12.13292 -12.03706 -11.69912 -11.50028 -10.66383 -10.08679 -10.02167 -9.91674 -8.85938 -8.46943 -5.96044 0.05856 0.26483 1.13759 1.39704 1.42206 1.52881 2.01919 2.25036 2.43550 2.63746 3.18969 3.22522 3.55315 3.72956 3.94089 3.97750 4.14304 4.22710 4.28579 4.37985 4.43893 4.50927 4.74488 4.78034 4.91330 4.97524 5.12392 5.20788 5.33798 5.40609 5.56690 5.77412 5.99663 6.19942 6.58786 7.11646 7.53935 8.09380 8.70156 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.039786 B = 0.003352 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.603155 B = 8351.108623 C = 8588.317243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.571 5.571 10 C 0.442 3.558 11 O -0.614 6.614 12 C 0.065 3.935 13 N -0.492 5.492 14 C 0.057 3.943 15 C -0.100 4.100 16 C -0.132 4.132 17 C -0.078 4.078 18 C -0.054 4.054 19 Cl -0.064 7.064 20 C -0.089 4.089 21 C -0.109 4.109 22 C 0.081 3.919 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 -18.704 1.615 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.209 5.209 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.064 4.064 13 N -0.208 5.208 14 C -0.070 4.070 15 C -0.138 4.138 16 C -0.135 4.135 17 C -0.097 4.097 18 C -0.082 4.082 19 Cl -0.035 7.035 20 C -0.108 4.108 21 C -0.129 4.129 22 C -0.016 4.016 23 H 0.088 0.912 24 H 0.230 0.770 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.543 -18.489 1.272 18.706 hybrid contribution -0.641 0.804 0.317 1.076 sum -3.184 -17.685 1.589 18.040 Atomic orbital electron populations 1.69663 1.06833 1.29416 1.50144 1.26026 0.96518 1.02364 0.96189 0.85000 0.77779 0.76665 0.78982 1.19757 1.19509 1.19618 1.19627 0.92722 0.83881 1.50099 0.90220 1.41904 1.09308 1.04608 1.65076 1.20589 0.88241 0.85657 0.82666 1.90506 1.15545 1.87757 1.56135 1.21806 0.92719 0.87868 1.03975 1.59527 1.34726 1.01244 1.25335 1.23102 0.99612 0.99194 0.85075 1.21720 0.99842 0.96572 0.95620 1.21097 1.00192 0.96272 0.95907 1.20371 0.98228 0.94099 0.97032 1.20793 1.03006 0.89451 0.94902 1.98362 1.79761 1.27103 1.98286 1.20997 0.97762 0.93200 0.98845 1.20637 1.00466 0.95957 0.95883 1.19927 0.95282 0.91476 0.94892 0.91249 0.77013 0.87643 0.90423 0.89461 0.91040 0.86923 0.88889 0.83190 0.82484 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.22 13.05 21.66 0.28 -48.93 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 3 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.10 5.29 -306.99 -1.62 -30.73 16 10 C 0.44 20.95 7.24 87.66 0.63 21.59 16 11 O -0.61 -33.95 15.55 -3.08 -0.05 -34.00 16 12 C 0.07 2.30 5.23 85.56 0.45 2.75 16 13 N -0.49 -16.56 4.60 -692.89 -3.19 -19.75 16 14 C 0.06 1.70 6.36 86.65 0.55 2.25 16 15 C -0.10 -2.17 6.91 30.67 0.21 -1.95 16 16 C -0.13 -3.12 6.23 -19.49 -0.12 -3.24 16 17 C -0.08 -1.58 9.82 22.23 0.22 -1.36 16 18 C -0.05 -1.09 6.32 22.35 0.14 -0.95 16 19 Cl -0.06 -1.13 28.96 -2.72 -0.08 -1.20 16 20 C -0.09 -1.79 9.81 22.23 0.22 -1.57 16 21 C -0.11 -2.67 10.05 22.47 0.23 -2.45 16 22 C 0.08 2.26 5.49 38.27 0.21 2.47 16 23 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 24 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 25 H 0.11 3.41 7.96 -2.39 -0.02 3.39 16 26 H 0.08 2.43 7.94 -2.39 -0.02 2.41 16 27 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.38 7.30 -2.39 -0.02 2.37 16 29 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -65.54 302.15 1.81 -63.73 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.41 Total: 26.87 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 4.02 Total: -0.56 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -4.53 Total: -99.41 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.05 Total: -34.00 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -65.54 1.81 -63.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334431326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.267 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds