Wall clock time and date at job start Tue Mar 31 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38487 * 120.86587 * 2 1 4 4 Cl 1.73599 * 120.35784 * 0.03624 * 3 2 1 5 5 C 1.38445 * 119.28486 * 180.25820 * 3 2 1 6 6 N 1.31953 * 121.07640 * 359.49938 * 5 3 2 7 7 C 1.31652 * 121.90048 * 0.25264 * 6 5 3 8 8 C 1.39629 * 120.58427 * 0.02562 * 7 6 5 9 9 C 1.47724 * 120.55758 * 179.97438 * 8 7 6 10 10 O 1.21602 * 119.99831 * 134.81752 * 9 8 7 11 11 N 1.34770 * 120.00382 * 314.81646 * 9 8 7 12 12 C 1.36874 * 120.00415 * 184.06899 * 11 9 8 13 13 H 1.08005 * 120.00008 * 134.04071 * 12 11 9 14 14 C 1.39045 * 120.00031 * 314.04780 * 12 11 9 15 15 N 1.31360 * 120.00230 * 339.07771 * 14 12 11 16 16 Si 1.86805 * 119.99912 * 159.07415 * 14 12 11 17 17 H 1.48502 * 109.46774 * 60.00531 * 16 14 12 18 18 H 1.48497 * 109.47089 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47246 * 300.00106 * 16 14 12 20 20 C 1.46499 * 119.99717 * 4.07420 * 11 9 8 21 21 C 1.53003 * 117.49714 * 183.07001 * 20 11 9 22 22 C 1.53000 * 117.50074 * 114.40917 * 20 11 9 23 23 H 1.08994 * 109.47109 * 273.26435 * 1 2 3 24 24 H 1.08996 * 109.47027 * 33.26928 * 1 2 3 25 25 H 1.09001 * 109.47122 * 153.26284 * 1 2 3 26 26 H 1.08004 * 119.45869 * 179.77075 * 5 3 2 27 27 H 1.07996 * 119.70626 * 179.97438 * 7 6 5 28 28 H 0.96996 * 119.99915 * 185.04524 * 15 14 12 29 29 H 1.08995 * 115.54968 * 328.73363 * 20 11 9 30 30 H 1.08995 * 117.50135 * 359.97438 * 21 20 11 31 31 H 1.09006 * 117.49962 * 145.01990 * 21 20 11 32 32 H 1.08996 * 117.49939 * 214.97850 * 22 20 11 33 33 H 1.09001 * 117.49743 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1887 0.0000 4 17 1.3818 2.7103 0.0009 5 6 3.6014 1.1505 -0.0054 6 7 4.2511 0.0020 -0.0007 7 6 3.6209 -1.1538 0.0043 8 6 2.2254 -1.2021 0.0044 9 6 1.5188 -2.4993 0.0095 10 8 0.5760 -2.6752 0.7572 11 7 1.9189 -3.4880 -0.8144 12 6 1.2140 -4.6599 -0.8701 13 1 0.9690 -5.0978 -1.8265 14 6 0.8133 -5.2867 0.3046 15 7 1.4269 -5.0183 1.4346 16 14 -0.5980 -6.5103 0.2758 17 1 -0.2597 -7.6347 -0.6333 18 1 -0.8269 -7.0342 1.6463 19 1 -1.8287 -5.8351 -0.2085 20 6 3.1085 -3.3083 -1.6503 21 6 3.4701 -4.4381 -2.6167 22 6 4.3159 -4.2030 -1.3626 23 1 -0.3633 0.0585 1.0259 24 1 -0.3633 0.8592 -0.5637 25 1 -0.3633 -0.9178 -0.4623 26 1 4.1583 2.0759 -0.0092 27 1 4.1882 -2.0727 0.0077 28 1 1.1971 -5.5083 2.2396 29 1 3.3053 -2.2865 -1.9746 30 1 2.8231 -5.3152 -2.6302 31 1 3.9051 -4.1595 -3.5765 32 1 5.3069 -3.7699 -1.4979 33 1 4.2249 -4.9256 -0.5516 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334565780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:32 Heat of formation + Delta-G solvation = 34.105955 kcal Electronic energy + Delta-G solvation = -19980.166309 eV Core-core repulsion = 16840.332499 eV Total energy + Delta-G solvation = -3139.833810 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28950 -38.31158 -36.51728 -36.21588 -33.54756 -32.78270 -31.51418 -30.46444 -27.71835 -25.37141 -23.75178 -22.17354 -21.64589 -21.25791 -19.59680 -17.35030 -16.54640 -16.28317 -16.04114 -15.20304 -14.94353 -14.34777 -14.19303 -13.68393 -13.12688 -12.97824 -12.74208 -12.54317 -12.42589 -12.07717 -11.79237 -11.52341 -11.20317 -11.13997 -10.97189 -10.90141 -10.48196 -10.40800 -9.99274 -9.82749 -9.52886 -9.11516 -8.82471 -8.67741 -8.23931 -7.17695 -6.28136 -4.02071 1.06061 1.31627 2.13239 3.23080 3.31042 3.34205 3.67395 4.12962 4.18560 4.54004 4.67945 4.70716 4.84049 5.01307 5.05591 5.27467 5.53905 5.61119 5.67516 5.75118 5.81277 5.86865 5.99511 6.09529 6.24334 6.29928 6.42639 6.60838 6.72892 6.81771 6.93554 7.49154 8.03407 8.12879 8.85756 8.95595 9.45005 10.06260 10.79651 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.006401 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.368582 B = 4372.959748 C = 5225.717329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.000 4.000 3 C -0.099 4.099 4 Cl -0.064 7.064 5 C 0.107 3.893 6 N -0.478 5.478 7 C 0.122 3.878 8 C -0.133 4.133 9 C 0.516 3.484 10 O -0.522 6.522 11 N -0.408 5.408 12 C -0.352 4.352 13 H 0.084 0.916 14 C 0.078 3.922 15 N -0.822 5.822 16 Si 0.915 3.085 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.058 3.942 21 C -0.175 4.175 22 C -0.196 4.196 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.160 0.840 27 H 0.171 0.829 28 H 0.268 0.732 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 8.876 -4.673 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.009 4.009 3 C -0.128 4.128 4 Cl -0.036 7.036 5 C -0.051 4.051 6 N -0.187 5.187 7 C -0.035 4.035 8 C -0.139 4.139 9 C 0.303 3.697 10 O -0.400 6.400 11 N -0.127 5.127 12 C -0.478 4.478 13 H 0.102 0.898 14 C -0.135 4.135 15 N -0.454 5.454 16 Si 0.741 3.259 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.047 4.047 21 C -0.213 4.213 22 C -0.235 4.235 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.177 0.823 27 H 0.188 0.812 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.603 8.903 -4.053 10.425 hybrid contribution -1.354 -0.468 0.149 1.440 sum 2.249 8.435 -3.904 9.563 Atomic orbital electron populations 1.20865 0.88952 1.03679 1.03592 1.20241 0.97751 0.89942 0.92993 1.21823 0.93812 0.87178 1.09938 1.98335 1.78563 1.29610 1.97046 1.22716 0.89203 0.97140 0.96032 1.67799 1.39740 0.97886 1.13320 1.23404 0.91295 0.96259 0.92557 1.21543 0.94938 0.95859 1.01604 1.17446 0.85193 0.81728 0.85325 1.90655 1.29421 1.80629 1.39264 1.42638 1.20821 1.12674 1.36565 1.18909 1.34749 1.01003 0.93166 0.89822 1.25324 0.96759 0.96286 0.95093 1.69797 1.37448 1.37735 1.00416 0.86239 0.82634 0.79760 0.77240 1.20216 1.21097 1.19716 1.21928 0.89267 0.94521 0.99020 1.23113 1.03527 1.01659 0.93009 1.23330 0.94570 1.05075 1.00545 0.89798 0.91396 0.89480 0.82291 0.81227 0.92141 0.87864 0.87478 0.89777 0.89712 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 8.73 36.01 0.31 -1.66 16 2 C 0.00 0.00 5.95 -103.85 -0.62 -0.62 16 3 C -0.10 -1.53 6.33 -39.41 -0.25 -1.78 16 4 Cl -0.06 -0.83 27.53 -51.86 -1.43 -2.26 16 5 C 0.11 1.60 10.97 -17.42 -0.19 1.41 16 6 N -0.48 -8.10 10.34 -12.86 -0.13 -8.23 16 7 C 0.12 2.27 8.81 -17.11 -0.15 2.12 16 8 C -0.13 -2.73 5.14 -104.83 -0.54 -3.27 16 9 C 0.52 12.66 5.93 -12.39 -0.07 12.58 16 10 O -0.52 -14.61 13.26 5.28 0.07 -14.55 16 11 N -0.41 -9.74 2.81 -108.83 -0.31 -10.05 16 12 C -0.35 -9.07 7.99 -15.00 -0.12 -9.19 16 13 H 0.08 2.08 7.09 -52.48 -0.37 1.71 16 14 C 0.08 2.08 4.29 -17.45 -0.07 2.01 16 15 N -0.82 -23.18 11.97 55.50 0.66 -22.52 16 16 Si 0.91 20.97 29.61 -169.99 -5.03 15.94 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.06 1.13 4.44 -67.93 -0.30 0.83 16 21 C -0.18 -3.02 9.81 -26.69 -0.26 -3.28 16 22 C -0.20 -3.47 9.49 -26.69 -0.25 -3.72 16 23 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 24 H 0.07 0.98 7.16 -51.93 -0.37 0.61 16 25 H 0.09 1.70 6.57 -51.93 -0.34 1.36 16 26 H 0.16 1.85 8.06 -52.48 -0.42 1.42 16 27 H 0.17 3.14 5.88 -52.49 -0.31 2.83 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.10 1.85 6.27 -51.93 -0.33 1.52 16 30 H 0.11 2.01 6.61 -51.93 -0.34 1.66 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -29.61 293.28 -7.58 -37.18 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.31 Total: 4.64 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.52 Total: -4.58 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.23 Total: -40.80 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.07 Total: -14.55 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.43 Total: -2.26 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.61 -7.58 -37.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334565780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.288 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds