Wall clock time and date at job start Tue Mar 31 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38487 * 120.86587 * 2 1 4 4 Cl 1.73599 * 120.35784 * 0.03624 * 3 2 1 5 5 C 1.38445 * 119.28486 * 180.25820 * 3 2 1 6 6 N 1.31953 * 121.07640 * 359.49938 * 5 3 2 7 7 C 1.31652 * 121.90048 * 0.25264 * 6 5 3 8 8 C 1.39629 * 120.58427 * 0.02562 * 7 6 5 9 9 C 1.47724 * 120.55758 * 179.97438 * 8 7 6 10 10 O 1.21602 * 119.99831 * 134.81752 * 9 8 7 11 11 N 1.34770 * 120.00382 * 314.81646 * 9 8 7 12 12 C 1.36874 * 120.00415 * 184.06899 * 11 9 8 13 13 H 1.08005 * 120.00008 * 134.04071 * 12 11 9 14 14 C 1.39045 * 120.00031 * 314.04780 * 12 11 9 15 15 N 1.31360 * 120.00230 * 339.07771 * 14 12 11 16 16 Si 1.86805 * 119.99912 * 159.07415 * 14 12 11 17 17 H 1.48502 * 109.46774 * 60.00531 * 16 14 12 18 18 H 1.48497 * 109.47089 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47246 * 300.00106 * 16 14 12 20 20 C 1.46499 * 119.99717 * 4.07420 * 11 9 8 21 21 C 1.53003 * 117.49714 * 183.07001 * 20 11 9 22 22 C 1.53000 * 117.50074 * 114.40917 * 20 11 9 23 23 H 1.08994 * 109.47109 * 273.26435 * 1 2 3 24 24 H 1.08996 * 109.47027 * 33.26928 * 1 2 3 25 25 H 1.09001 * 109.47122 * 153.26284 * 1 2 3 26 26 H 1.08004 * 119.45869 * 179.77075 * 5 3 2 27 27 H 1.07996 * 119.70626 * 179.97438 * 7 6 5 28 28 H 0.96996 * 119.99915 * 185.04524 * 15 14 12 29 29 H 1.08995 * 115.54968 * 328.73363 * 20 11 9 30 30 H 1.08995 * 117.50135 * 359.97438 * 21 20 11 31 31 H 1.09006 * 117.49962 * 145.01990 * 21 20 11 32 32 H 1.08996 * 117.49939 * 214.97850 * 22 20 11 33 33 H 1.09001 * 117.49743 * 0.02562 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1887 0.0000 4 17 1.3818 2.7103 0.0009 5 6 3.6014 1.1505 -0.0054 6 7 4.2511 0.0020 -0.0007 7 6 3.6209 -1.1538 0.0043 8 6 2.2254 -1.2021 0.0044 9 6 1.5188 -2.4993 0.0095 10 8 0.5760 -2.6752 0.7572 11 7 1.9189 -3.4880 -0.8144 12 6 1.2140 -4.6599 -0.8701 13 1 0.9690 -5.0978 -1.8265 14 6 0.8133 -5.2867 0.3046 15 7 1.4269 -5.0183 1.4346 16 14 -0.5980 -6.5103 0.2758 17 1 -0.2597 -7.6347 -0.6333 18 1 -0.8269 -7.0342 1.6463 19 1 -1.8287 -5.8351 -0.2085 20 6 3.1085 -3.3083 -1.6503 21 6 3.4701 -4.4381 -2.6167 22 6 4.3159 -4.2030 -1.3626 23 1 -0.3633 0.0585 1.0259 24 1 -0.3633 0.8592 -0.5637 25 1 -0.3633 -0.9178 -0.4623 26 1 4.1583 2.0759 -0.0092 27 1 4.1882 -2.0727 0.0077 28 1 1.1971 -5.5083 2.2396 29 1 3.3053 -2.2865 -1.9746 30 1 2.8231 -5.3152 -2.6302 31 1 3.9051 -4.1595 -3.5765 32 1 5.3069 -3.7699 -1.4979 33 1 4.2249 -4.9256 -0.5516 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334565780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:32 Heat of formation + Delta-G solvation = 16.412778 kcal Electronic energy + Delta-G solvation = -19980.933543 eV Core-core repulsion = 16840.332499 eV Total energy + Delta-G solvation = -3140.601044 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75132 -39.94723 -37.88558 -37.68832 -35.10243 -34.51788 -33.21327 -32.03284 -29.13744 -27.19139 -25.26513 -23.63378 -23.10775 -22.78012 -21.30473 -19.01949 -17.99562 -17.92878 -17.39326 -17.02978 -16.41074 -15.97614 -15.59364 -15.39429 -14.83455 -14.58742 -14.11969 -13.93972 -13.87580 -13.78151 -13.13484 -13.00368 -12.85165 -12.77556 -12.70540 -12.25603 -12.17903 -12.04165 -11.60326 -11.30727 -10.96855 -10.73780 -10.54550 -10.12717 -9.91387 -9.03871 -8.27210 -6.03976 -0.30484 -0.07412 0.91162 1.37063 1.45762 1.49056 2.10634 2.32600 2.62117 2.89741 3.06750 3.29791 3.35077 3.52357 3.61042 3.76343 4.07809 4.15244 4.25391 4.33664 4.36725 4.49650 4.59558 4.68706 4.89705 4.94413 5.02126 5.18764 5.27370 5.39797 5.44673 5.51735 6.16736 6.68557 6.94171 7.08020 7.56311 8.20204 8.80846 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021298 B = 0.006401 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.368582 B = 4372.959748 C = 5225.717329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.008 4.008 3 C -0.095 4.095 4 Cl -0.033 7.033 5 C 0.125 3.875 6 N -0.479 5.479 7 C 0.127 3.873 8 C -0.161 4.161 9 C 0.510 3.490 10 O -0.572 6.572 11 N -0.423 5.423 12 C -0.362 4.362 13 H 0.087 0.913 14 C 0.031 3.969 15 N -0.862 5.862 16 Si 0.969 3.031 17 H -0.255 1.255 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.038 3.962 21 C -0.160 4.160 22 C -0.185 4.185 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.202 0.798 27 H 0.166 0.834 28 H 0.262 0.738 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 10.947 -6.123 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.017 4.017 3 C -0.123 4.123 4 Cl -0.005 7.005 5 C -0.033 4.033 6 N -0.188 5.188 7 C -0.029 4.029 8 C -0.167 4.167 9 C 0.298 3.702 10 O -0.453 6.453 11 N -0.141 5.141 12 C -0.489 4.489 13 H 0.104 0.896 14 C -0.177 4.177 15 N -0.496 5.496 16 Si 0.794 3.206 17 H -0.179 1.179 18 H -0.214 1.214 19 H -0.206 1.206 20 C -0.067 4.067 21 C -0.197 4.197 22 C -0.223 4.223 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.219 0.781 27 H 0.183 0.817 28 H 0.072 0.928 29 H 0.139 0.861 30 H 0.105 0.895 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.908 10.960 -5.547 13.228 hybrid contribution -1.714 -0.893 0.542 2.007 sum 3.194 10.067 -5.006 11.688 Atomic orbital electron populations 1.20786 0.88872 1.03296 1.03433 1.20377 0.98057 0.90356 0.92884 1.21836 0.94216 0.87529 1.08767 1.98353 1.78107 1.27191 1.96810 1.23416 0.89193 0.97840 0.92883 1.67897 1.39501 0.97865 1.13581 1.23256 0.90299 0.97003 0.92380 1.21219 0.95775 0.94588 1.05114 1.18036 0.84786 0.83085 0.84260 1.90598 1.31650 1.81926 1.41169 1.42823 1.22207 1.12136 1.36928 1.19143 1.35078 1.01538 0.93133 0.89564 1.26083 0.98522 0.98147 0.94907 1.69910 1.39303 1.39543 1.00863 0.85390 0.79518 0.78440 0.77265 1.17915 1.21439 1.20582 1.22115 0.88491 0.96178 0.99871 1.23188 1.02416 0.99711 0.94383 1.23265 0.95713 1.03585 0.99762 0.90249 0.88553 0.92531 0.78099 0.81664 0.92839 0.86129 0.89454 0.85811 0.86083 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.70 8.73 71.24 0.62 -3.08 16 2 C -0.01 -0.27 5.95 -19.37 -0.12 -0.39 16 3 C -0.09 -2.67 6.33 22.38 0.14 -2.53 16 4 Cl -0.03 -0.75 27.53 -2.72 -0.07 -0.83 16 5 C 0.12 3.24 10.97 84.72 0.93 4.17 16 6 N -0.48 -14.90 10.34 -194.61 -2.01 -16.91 16 7 C 0.13 4.60 8.81 85.06 0.75 5.35 16 8 C -0.16 -6.62 5.14 -20.00 -0.10 -6.72 16 9 C 0.51 25.93 5.93 86.75 0.51 26.45 16 10 O -0.57 -33.72 13.26 -4.04 -0.05 -33.77 16 11 N -0.42 -20.76 2.81 -616.50 -1.73 -22.49 16 12 C -0.36 -19.28 7.99 84.10 0.67 -18.60 16 13 H 0.09 4.40 7.09 -2.91 -0.02 4.38 16 14 C 0.03 1.74 4.29 84.96 0.36 2.10 16 15 N -0.86 -51.00 11.97 21.68 0.26 -50.74 16 16 Si 0.97 44.43 29.61 68.60 2.03 46.46 16 17 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 C 0.04 1.46 4.44 44.99 0.20 1.66 16 21 C -0.16 -5.24 9.81 30.62 0.30 -4.94 16 22 C -0.18 -6.35 9.49 30.62 0.29 -6.06 16 23 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 24 H 0.10 2.65 7.16 -2.39 -0.02 2.63 16 25 H 0.06 2.29 6.57 -2.39 -0.02 2.28 16 26 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 27 H 0.17 6.04 5.88 -2.91 -0.02 6.02 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 29 H 0.12 4.15 6.27 -2.39 -0.01 4.14 16 30 H 0.09 3.24 6.61 -2.39 -0.02 3.23 16 31 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 32 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -67.47 293.28 4.13 -63.34 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.15 Total: 17.53 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 4.57 Total: -2.59 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -3.49 Total: -90.14 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.05 Total: -33.77 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.07 Total: -0.83 kcal Total: -67.47 4.13 -63.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334565780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.749 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds