Wall clock time and date at job start Tue Mar 31 2020 01:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86805 * 119.99716 * 2 1 4 4 H 1.48504 * 109.46901 * 240.00059 * 3 2 1 5 5 H 1.48501 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47267 * 120.00112 * 3 2 1 7 7 C 1.39862 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00104 * 197.96826 * 7 2 1 9 9 C 1.41130 * 119.99659 * 17.96331 * 7 2 1 10 10 C 1.40908 * 120.15076 * 204.60073 * 9 7 2 11 11 C 1.36347 * 119.85524 * 179.74737 * 10 9 7 12 12 C 1.39542 * 120.16712 * 0.55354 * 11 10 9 13 13 N 1.38902 * 119.84357 * 179.72157 * 12 11 10 14 14 C 1.46500 * 120.00015 * 359.72607 * 13 12 11 15 15 H 1.09000 * 110.43642 * 327.54018 * 14 13 12 16 16 C 1.54637 * 110.48702 * 205.00248 * 14 13 12 17 17 C 1.54482 * 101.76345 * 216.52254 * 16 14 13 18 18 N 1.46762 * 105.47297 * 25.41307 * 17 16 14 19 19 C 1.34419 * 111.30495 * 342.98498 * 18 17 16 20 20 O 1.21279 * 124.94556 * 180.36785 * 19 18 17 21 21 C 1.39662 * 120.31223 * 359.44493 * 12 11 10 22 22 Cl 1.73599 * 119.93263 * 180.25294 * 21 12 11 23 23 C 1.36432 * 120.13789 * 0.27012 * 21 12 11 24 24 H 0.97001 * 120.00019 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.06768 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.91438 * 180.27530 * 11 10 9 27 27 H 0.96997 * 120.00357 * 179.72635 * 13 12 11 28 28 H 1.09001 * 110.96599 * 334.64281 * 16 14 13 29 29 H 1.08997 * 110.96619 * 98.40011 * 16 14 13 30 30 H 1.09000 * 110.24150 * 144.41822 * 17 16 14 31 31 H 1.08998 * 110.24507 * 266.41391 * 17 16 14 32 32 H 0.97003 * 124.34685 * 162.95988 * 18 17 16 33 33 H 1.08007 * 120.08970 * 179.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6965 -1.2126 5 1 1.2779 2.7465 0.0006 6 1 3.0967 1.6966 1.2125 7 6 2.0084 -1.2112 -0.0005 8 1 3.0489 -1.2341 0.2880 9 6 1.3544 -2.4035 -0.3780 10 6 1.8270 -3.6473 0.0857 11 6 1.1874 -4.7950 -0.2786 12 6 0.0741 -4.7412 -1.1181 13 7 -0.5689 -5.9151 -1.4896 14 6 -0.0742 -7.2061 -1.0051 15 1 1.0091 -7.1787 -0.8874 16 6 -0.4848 -8.3406 -1.9724 17 6 -0.7725 -9.5005 -0.9934 18 7 -1.1279 -8.8602 0.2785 19 6 -0.7425 -7.5727 0.3016 20 8 -0.9072 -6.8149 1.2341 21 6 -0.4003 -3.5122 -1.5818 22 17 -1.7902 -3.4563 -2.6205 23 6 0.2265 -2.3555 -1.2205 24 1 -0.4850 0.8400 0.0004 25 1 2.6912 -3.6910 0.7319 26 1 1.5462 -5.7486 0.0799 27 1 -1.3454 -5.8801 -2.0698 28 1 -1.3806 -8.0710 -2.5318 29 1 0.3332 -8.5932 -2.6469 30 1 -1.6042 -10.1037 -1.3575 31 1 0.1167 -10.1185 -0.8691 32 1 -1.5828 -9.3086 1.0086 33 1 -0.1408 -1.4055 -1.5800 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334666757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:57 Heat of formation + Delta-G solvation = -38.652880 kcal Electronic energy + Delta-G solvation = -19212.612576 eV Core-core repulsion = 16069.623706 eV Total energy + Delta-G solvation = -3142.988870 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40901 -39.69211 -37.45107 -37.11943 -36.40321 -34.69290 -31.76251 -31.12105 -29.99518 -27.93113 -26.03617 -23.56192 -22.63206 -22.34315 -20.97255 -19.26510 -18.38207 -18.13653 -17.30191 -17.06941 -16.58248 -15.98668 -15.42755 -14.87222 -14.74359 -14.64865 -14.57766 -14.25214 -14.01011 -13.65175 -13.25978 -12.93976 -12.82361 -12.65464 -12.52215 -12.26224 -12.07035 -11.89490 -11.58198 -11.45009 -11.39212 -10.93439 -10.26815 -10.01844 -9.33068 -8.59550 -8.25868 -6.08236 0.89876 1.07265 1.41382 1.51345 1.52471 1.54545 1.60449 2.26512 2.41097 2.76657 2.84440 3.53651 3.61076 3.74000 4.05084 4.11118 4.34188 4.54711 4.72002 4.80619 5.01102 5.04778 5.10772 5.13544 5.32360 5.46894 5.54114 5.75339 5.92886 6.01600 6.06307 6.24941 6.52562 6.67657 6.95203 7.00906 7.09064 7.33323 8.43824 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028006 B = 0.004781 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.547871 B = 5855.052816 C = 6402.480301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.033 3.967 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.051 3.949 10 C -0.192 4.192 11 C -0.139 4.139 12 C 0.115 3.885 13 N -0.729 5.729 14 C 0.121 3.879 15 H 0.113 0.887 16 C -0.128 4.128 17 C 0.105 3.895 18 N -0.725 5.725 19 C 0.482 3.518 20 O -0.576 6.576 21 C -0.075 4.075 22 Cl -0.099 7.099 23 C -0.142 4.142 24 H 0.284 0.716 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.398 0.602 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.413 0.587 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -17.232 -6.252 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.095 0.905 9 C 0.048 3.952 10 C -0.212 4.212 11 C -0.161 4.161 12 C 0.015 3.985 13 N -0.364 5.364 14 C 0.011 3.989 15 H 0.130 0.870 16 C -0.166 4.166 17 C -0.019 4.019 18 N -0.382 5.382 19 C 0.267 3.733 20 O -0.454 6.454 21 C -0.106 4.106 22 Cl -0.071 7.071 23 C -0.163 4.163 24 H 0.095 0.905 25 H 0.124 0.876 26 H 0.136 0.864 27 H 0.235 0.765 28 H 0.110 0.890 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.253 0.747 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.471 -16.757 -5.869 17.816 hybrid contribution -0.517 0.913 0.480 1.154 sum -1.988 -15.844 -5.389 16.853 Atomic orbital electron populations 1.69916 1.08956 1.30212 1.37250 1.26687 0.95397 1.04373 0.91582 0.85293 0.78710 0.75928 0.79981 1.18389 1.19639 1.18503 1.19588 0.98359 0.92316 1.42714 0.90483 1.17695 0.92626 0.93346 0.91520 1.20867 1.03282 0.92557 1.04459 1.20007 0.96867 0.97873 1.01337 1.17048 0.95610 0.85032 1.00780 1.43737 1.35016 1.01307 1.56361 1.21620 1.00094 0.85211 0.91982 0.86956 1.22983 1.04758 0.91758 0.97103 1.22348 1.03472 0.94981 0.81068 1.46277 1.60151 1.11313 1.20429 1.22319 0.78423 0.82556 0.90045 1.90760 1.58116 1.55509 1.41034 1.20104 0.93344 0.94117 1.02999 1.98214 1.43276 1.98614 1.66978 1.20756 0.99274 0.95684 1.00593 0.90517 0.87634 0.86431 0.76531 0.89049 0.85739 0.87203 0.88262 0.74738 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.27 10.96 21.81 0.24 -46.03 16 2 C 0.03 1.72 5.13 85.22 0.44 2.16 16 3 Si 0.98 39.99 29.60 68.60 2.03 42.02 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.50 -27.82 9.03 23.37 0.21 -27.61 16 8 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 9 C 0.05 2.88 5.57 -21.27 -0.12 2.76 16 10 C -0.19 -9.71 9.74 22.48 0.22 -9.49 16 11 C -0.14 -6.32 9.14 22.14 0.20 -6.12 16 12 C 0.12 5.10 6.67 38.68 0.26 5.35 16 13 N -0.73 -24.87 5.23 -318.46 -1.67 -26.53 16 14 C 0.12 3.15 2.97 44.99 0.13 3.28 16 15 H 0.11 2.90 6.38 -2.39 -0.02 2.89 16 16 C -0.13 -1.69 6.87 31.66 0.22 -1.48 16 17 C 0.10 0.98 7.78 86.83 0.68 1.65 16 18 N -0.73 -13.56 6.24 -459.81 -2.87 -16.43 16 19 C 0.48 14.72 8.07 87.90 0.71 15.43 16 20 O -0.58 -25.07 18.02 -3.03 -0.05 -25.12 16 21 C -0.08 -3.65 6.30 22.19 0.14 -3.51 16 22 Cl -0.10 -4.02 27.55 -2.72 -0.07 -4.09 16 23 C -0.14 -7.80 8.40 22.49 0.19 -7.61 16 24 H 0.28 14.41 8.30 -92.71 -0.77 13.64 16 25 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 26 H 0.12 4.72 6.17 -2.91 -0.02 4.71 16 27 H 0.40 12.66 7.06 -92.71 -0.65 12.01 16 28 H 0.09 1.16 7.82 -2.39 -0.02 1.15 16 29 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.41 6.58 8.96 -92.71 -0.83 5.75 16 33 H 0.11 6.43 6.16 -2.91 -0.02 6.41 16 Total: -1.00 -73.40 295.83 0.57 -72.83 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.31 Total: 28.53 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 3.27 Total: -25.18 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -4.30 Total: -88.99 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 17 Polarization: -4.02 SS G_CDS: -0.07 Total: -4.09 kcal Total: -73.40 0.57 -72.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334666757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.177 kcal (2) G-P(sol) polarization free energy of solvation -73.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds