Wall clock time and date at job start Tue Mar 31 2020 01:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48498 * 109.46686 * 275.41112 * 3 2 1 5 5 H 1.48496 * 109.47112 * 35.41625 * 3 2 1 6 6 H 1.48500 * 109.46981 * 155.41588 * 3 2 1 7 7 C 1.39862 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99835 * 341.72093 * 7 2 1 9 9 C 1.41128 * 119.99977 * 161.71911 * 7 2 1 10 10 C 1.40908 * 120.14971 * 330.13560 * 9 7 2 11 11 C 1.36352 * 119.85596 * 179.97438 * 10 9 7 12 12 C 1.39544 * 120.16895 * 359.97438 * 11 10 9 13 13 N 1.38899 * 119.84520 * 180.02562 * 12 11 10 14 14 C 1.46496 * 120.00077 * 359.97438 * 13 12 11 15 15 H 1.08998 * 110.53666 * 32.38975 * 14 13 12 16 16 C 1.54628 * 110.48557 * 155.00247 * 14 13 12 17 17 C 1.54486 * 101.79855 * 143.49487 * 16 14 13 18 18 N 1.46759 * 105.47273 * 334.56688 * 17 16 14 19 19 C 1.34417 * 111.30313 * 17.01357 * 18 17 16 20 20 O 1.21282 * 124.94483 * 179.56234 * 19 18 17 21 21 C 1.39666 * 120.30669 * 0.27660 * 12 11 10 22 22 Cl 1.73607 * 119.92967 * 179.70388 * 21 12 11 23 23 C 1.36429 * 120.13937 * 359.44243 * 21 12 11 24 24 H 0.97004 * 119.99796 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.07527 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.91136 * 180.02562 * 11 10 9 27 27 H 0.97001 * 119.99939 * 180.02562 * 13 12 11 28 28 H 1.08999 * 110.97401 * 25.35702 * 16 14 13 29 29 H 1.09002 * 110.96985 * 261.62879 * 16 14 13 30 30 H 1.09001 * 110.24480 * 93.56442 * 17 16 14 31 31 H 1.08992 * 110.24648 * 215.55868 * 17 16 14 32 32 H 0.97002 * 124.34585 * 197.04047 * 18 17 16 33 33 H 1.08007 * 120.08607 * 180.25301 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3762 2.1123 -1.3939 5 1 1.5025 2.6169 0.8113 6 1 3.5932 1.4098 0.5825 7 6 2.0083 -1.2113 0.0005 8 1 1.5092 -2.1228 0.2943 9 6 3.3662 -1.2424 -0.3828 10 6 3.8593 -0.3101 -1.3173 11 6 5.1723 -0.3452 -1.6831 12 6 6.0279 -1.3011 -1.1340 13 7 7.3645 -1.3305 -1.5109 14 6 7.8728 -0.3597 -2.4832 15 1 7.3429 0.5882 -2.3900 16 6 9.3932 -0.1506 -2.2949 17 6 9.8713 0.0232 -3.7536 18 7 8.8797 -0.6788 -4.5768 19 6 7.7455 -0.9021 -3.8908 20 8 6.7627 -1.4568 -4.3351 21 6 5.5454 -2.2318 -0.2111 22 17 6.6167 -3.4216 0.4601 23 6 4.2351 -2.2044 0.1681 24 1 -0.4850 0.8401 -0.0004 25 1 3.1986 0.4307 -1.7430 26 1 5.5513 0.3691 -2.3989 27 1 7.9611 -1.9942 -1.1309 28 1 9.8534 -1.0253 -1.8352 29 1 9.5940 0.7465 -1.7091 30 1 9.9003 1.0804 -4.0176 31 1 10.8558 -0.4259 -3.8839 32 1 9.0243 -0.9474 -5.4976 33 1 3.8638 -2.9219 0.8849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334666758.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:00 Heat of formation + Delta-G solvation = -14.738477 kcal Electronic energy + Delta-G solvation = -19323.552111 eV Core-core repulsion = 16181.600247 eV Total energy + Delta-G solvation = -3141.951864 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37635 -38.23409 -36.32824 -35.65437 -34.93183 -33.08738 -30.70022 -29.76067 -28.89219 -26.84577 -24.10666 -22.53374 -21.54840 -20.91626 -19.63294 -17.54595 -17.45397 -17.08786 -16.17227 -15.60808 -15.03522 -14.37690 -14.28999 -13.83030 -13.74004 -13.39550 -12.93188 -12.78684 -12.70212 -12.55115 -12.43090 -11.89466 -11.42624 -11.21364 -10.90825 -10.85979 -10.53887 -10.41683 -10.01974 -9.88995 -9.58423 -9.26934 -9.18090 -8.77482 -7.75212 -6.85505 -6.73892 -4.27733 2.46979 2.58817 2.69936 3.04425 3.13795 3.23427 3.27865 3.34825 3.95471 4.03293 4.34243 4.35594 4.56336 4.74785 4.85461 5.21695 5.29341 5.39758 5.60670 5.71201 5.87857 6.23437 6.50311 6.66210 6.73721 6.87220 6.96135 7.02148 7.28717 7.32623 7.74631 7.85628 8.04474 8.29329 8.36360 8.41510 8.67259 8.86571 10.18042 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.005923 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.895823 B = 4726.172980 C = 5601.072171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.084 3.916 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.448 4.448 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.193 4.193 11 C -0.118 4.118 12 C 0.099 3.901 13 N -0.733 5.733 14 C 0.132 3.868 15 H 0.112 0.888 16 C -0.140 4.140 17 C 0.106 3.894 18 N -0.741 5.741 19 C 0.493 3.507 20 O -0.506 6.506 21 C -0.042 4.042 22 Cl -0.118 7.118 23 C -0.168 4.168 24 H 0.283 0.717 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.395 0.605 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.405 0.595 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.769 3.185 -4.081 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.167 1.167 7 C -0.477 4.477 8 H 0.108 0.892 9 C 0.068 3.932 10 C -0.213 4.213 11 C -0.140 4.140 12 C 0.001 3.999 13 N -0.370 5.370 14 C 0.020 3.980 15 H 0.130 0.870 16 C -0.178 4.178 17 C -0.020 4.020 18 N -0.400 5.400 19 C 0.276 3.724 20 O -0.379 6.379 21 C -0.072 4.072 22 Cl -0.090 7.090 23 C -0.189 4.189 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.231 0.769 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.244 0.756 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.976 3.037 -4.200 18.708 hybrid contribution 0.685 0.299 -0.385 0.840 sum 18.660 3.335 -4.585 19.503 Atomic orbital electron populations 1.69733 1.07964 1.29947 1.36340 1.26079 0.94683 1.01420 0.91186 0.86393 0.81402 0.80208 0.78703 1.19765 1.21868 1.16733 1.19267 0.92892 0.96145 1.39405 0.89195 1.17509 0.93151 0.91413 0.91104 1.20732 0.94944 1.03687 1.01937 1.19861 0.93675 0.98839 1.01577 1.16844 0.84438 0.98554 1.00027 1.43615 1.08012 1.37622 1.47719 1.21303 0.94759 0.94977 0.86948 0.87021 1.22904 0.94400 1.04323 0.96223 1.21987 0.92428 0.97343 0.90206 1.46262 1.16675 1.61103 1.15938 1.21995 0.82239 0.78744 0.89383 1.90790 1.32056 1.41030 1.73987 1.19907 0.91363 0.93979 1.01911 1.98246 1.66954 1.58464 1.85326 1.20534 0.90281 1.04245 1.03800 0.90661 0.87632 0.88147 0.76932 0.89582 0.88532 0.90975 0.90388 0.75639 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.09 13.93 55.54 0.77 -21.31 16 2 C 0.08 2.22 5.40 -17.34 -0.09 2.13 16 3 Si 0.91 20.77 24.51 -169.99 -4.17 16.61 16 4 H -0.27 -6.05 6.70 56.52 0.38 -5.67 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.24 -5.65 6.87 56.52 0.39 -5.26 16 7 C -0.45 -12.24 9.55 -37.88 -0.36 -12.60 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 9 C 0.07 1.85 5.10 -106.80 -0.55 1.30 16 10 C -0.19 -4.71 7.11 -39.25 -0.28 -4.99 16 11 C -0.12 -2.59 9.14 -39.77 -0.36 -2.95 16 12 C 0.10 2.06 6.67 -83.64 -0.56 1.50 16 13 N -0.73 -12.11 5.23 -51.97 -0.27 -12.39 16 14 C 0.13 1.76 2.98 -67.89 -0.20 1.56 16 15 H 0.11 1.51 6.37 -51.93 -0.33 1.18 16 16 C -0.14 -1.14 6.87 -25.10 -0.17 -1.31 16 17 C 0.11 0.70 7.78 -3.12 -0.02 0.67 16 18 N -0.74 -7.53 6.24 -59.17 -0.37 -7.90 16 19 C 0.49 7.46 8.08 -10.81 -0.09 7.37 16 20 O -0.51 -10.38 18.02 5.56 0.10 -10.28 16 21 C -0.04 -0.90 6.30 -39.70 -0.25 -1.15 16 22 Cl -0.12 -2.12 27.55 -51.86 -1.43 -3.55 16 23 C -0.17 -3.97 9.50 -39.24 -0.37 -4.35 16 24 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 25 H 0.11 2.57 4.73 -52.49 -0.25 2.32 16 26 H 0.10 2.00 6.16 -52.49 -0.32 1.67 16 27 H 0.39 6.03 7.06 -40.82 -0.29 5.74 16 28 H 0.09 0.67 7.82 -51.93 -0.41 0.26 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.41 3.51 8.96 -40.82 -0.37 3.14 16 33 H 0.11 2.57 8.06 -52.48 -0.42 2.14 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -31.39 290.59 -7.54 -38.93 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.25 Total: 8.33 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.31 Total: -12.82 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.13 Total: -41.60 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.10 Total: -10.28 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.17 Total: 16.61 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -1.43 Total: -3.55 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.39 -7.54 -38.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334666758.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.195 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds