Wall clock time and date at job start Tue Mar 31 2020 01:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48498 * 109.46686 * 275.41112 * 3 2 1 5 5 H 1.48496 * 109.47112 * 35.41625 * 3 2 1 6 6 H 1.48500 * 109.46981 * 155.41588 * 3 2 1 7 7 C 1.39862 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99835 * 341.72093 * 7 2 1 9 9 C 1.41128 * 119.99977 * 161.71911 * 7 2 1 10 10 C 1.40908 * 120.14971 * 330.13560 * 9 7 2 11 11 C 1.36352 * 119.85596 * 179.97438 * 10 9 7 12 12 C 1.39544 * 120.16895 * 359.97438 * 11 10 9 13 13 N 1.38899 * 119.84520 * 180.02562 * 12 11 10 14 14 C 1.46496 * 120.00077 * 359.97438 * 13 12 11 15 15 H 1.08998 * 110.53666 * 32.38975 * 14 13 12 16 16 C 1.54628 * 110.48557 * 155.00247 * 14 13 12 17 17 C 1.54486 * 101.79855 * 143.49487 * 16 14 13 18 18 N 1.46759 * 105.47273 * 334.56688 * 17 16 14 19 19 C 1.34417 * 111.30313 * 17.01357 * 18 17 16 20 20 O 1.21282 * 124.94483 * 179.56234 * 19 18 17 21 21 C 1.39666 * 120.30669 * 0.27660 * 12 11 10 22 22 Cl 1.73607 * 119.92967 * 179.70388 * 21 12 11 23 23 C 1.36429 * 120.13937 * 359.44243 * 21 12 11 24 24 H 0.97004 * 119.99796 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.07527 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.91136 * 180.02562 * 11 10 9 27 27 H 0.97001 * 119.99939 * 180.02562 * 13 12 11 28 28 H 1.08999 * 110.97401 * 25.35702 * 16 14 13 29 29 H 1.09002 * 110.96985 * 261.62879 * 16 14 13 30 30 H 1.09001 * 110.24480 * 93.56442 * 17 16 14 31 31 H 1.08992 * 110.24648 * 215.55868 * 17 16 14 32 32 H 0.97002 * 124.34585 * 197.04047 * 18 17 16 33 33 H 1.08007 * 120.08607 * 180.25301 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3762 2.1123 -1.3939 5 1 1.5025 2.6169 0.8113 6 1 3.5932 1.4098 0.5825 7 6 2.0083 -1.2113 0.0005 8 1 1.5092 -2.1228 0.2943 9 6 3.3662 -1.2424 -0.3828 10 6 3.8593 -0.3101 -1.3173 11 6 5.1723 -0.3452 -1.6831 12 6 6.0279 -1.3011 -1.1340 13 7 7.3645 -1.3305 -1.5109 14 6 7.8728 -0.3597 -2.4832 15 1 7.3429 0.5882 -2.3900 16 6 9.3932 -0.1506 -2.2949 17 6 9.8713 0.0232 -3.7536 18 7 8.8797 -0.6788 -4.5768 19 6 7.7455 -0.9021 -3.8908 20 8 6.7627 -1.4568 -4.3351 21 6 5.5454 -2.2318 -0.2111 22 17 6.6167 -3.4216 0.4601 23 6 4.2351 -2.2044 0.1681 24 1 -0.4850 0.8401 -0.0004 25 1 3.1986 0.4307 -1.7430 26 1 5.5513 0.3691 -2.3989 27 1 7.9611 -1.9942 -1.1309 28 1 9.8534 -1.0253 -1.8352 29 1 9.5940 0.7465 -1.7091 30 1 9.9003 1.0804 -4.0176 31 1 10.8558 -0.4259 -3.8839 32 1 9.0243 -0.9474 -5.4976 33 1 3.8638 -2.9219 0.8849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334666758.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:00 Heat of formation + Delta-G solvation = -38.505377 kcal Electronic energy + Delta-G solvation = -19324.582721 eV Core-core repulsion = 16181.600247 eV Total energy + Delta-G solvation = -3142.982474 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45422 -39.92868 -37.47910 -37.28180 -36.41619 -34.88385 -32.02178 -31.55026 -30.25577 -27.98690 -25.84562 -23.88061 -22.69625 -22.51100 -20.92516 -19.45764 -18.72320 -18.27203 -17.32771 -16.93387 -16.79776 -16.06731 -15.66502 -14.93380 -14.92030 -14.75540 -14.54351 -14.42979 -14.32539 -14.12446 -13.30375 -13.27390 -12.78074 -12.70774 -12.48592 -12.31381 -12.21397 -11.93964 -11.67063 -11.54765 -11.41763 -10.98861 -10.39684 -10.02899 -9.53561 -8.81111 -8.42127 -6.26213 0.63784 0.80406 1.28928 1.35863 1.43096 1.51655 1.53827 2.17240 2.36663 2.60541 2.76224 3.40595 3.56873 3.58243 3.96708 4.08692 4.20218 4.40650 4.54105 4.74228 4.80368 4.84946 5.02257 5.06227 5.13160 5.24652 5.44650 5.49924 5.84821 5.90388 5.99337 6.04912 6.32081 6.45588 6.73254 6.86269 6.94444 7.31058 8.28587 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.005923 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.895823 B = 4726.172980 C = 5601.072171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.045 3.955 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.484 4.484 8 H 0.053 0.947 9 C 0.046 3.954 10 C -0.197 4.197 11 C -0.130 4.130 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.118 3.882 15 H 0.113 0.887 16 C -0.128 4.128 17 C 0.103 3.897 18 N -0.725 5.725 19 C 0.483 3.517 20 O -0.575 6.575 21 C -0.060 4.060 22 Cl -0.083 7.083 23 C -0.172 4.172 24 H 0.291 0.709 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.403 0.597 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.414 0.586 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.469 4.650 -4.750 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.168 4.168 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.171 1.171 7 C -0.515 4.515 8 H 0.071 0.929 9 C 0.042 3.958 10 C -0.217 4.217 11 C -0.152 4.152 12 C 0.028 3.972 13 N -0.361 5.361 14 C 0.008 3.992 15 H 0.131 0.869 16 C -0.166 4.166 17 C -0.020 4.020 18 N -0.381 5.381 19 C 0.267 3.733 20 O -0.453 6.453 21 C -0.090 4.090 22 Cl -0.054 7.054 23 C -0.192 4.192 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.141 0.859 27 H 0.240 0.760 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.253 0.747 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 22.789 4.514 -4.889 23.741 hybrid contribution -0.402 -0.302 -0.261 0.567 sum 22.387 4.212 -5.151 23.355 Atomic orbital electron populations 1.69771 1.09130 1.31087 1.38797 1.26764 0.95314 1.04028 0.90655 0.85556 0.79950 0.76737 0.79341 1.18532 1.20398 1.17106 1.19219 0.94267 0.95573 1.42462 0.92875 1.17575 0.92790 0.93075 0.92323 1.20810 0.96028 1.03270 1.01552 1.20088 0.93012 0.99918 1.02168 1.17041 0.86186 0.96430 0.97557 1.43766 1.06262 1.38293 1.47744 1.21682 0.98547 0.93743 0.85265 0.86907 1.22985 0.89670 1.06074 0.97832 1.22354 0.92552 0.98766 0.88313 1.46268 1.15837 1.59509 1.16469 1.22268 0.82465 0.78190 0.90345 1.90763 1.34726 1.44418 1.75366 1.19954 0.91396 0.95189 1.02461 1.98248 1.65372 1.56993 1.84811 1.20621 0.91284 1.03675 1.03670 0.89913 0.87966 0.85864 0.75996 0.88697 0.85796 0.88440 0.87125 0.74672 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.01 13.93 21.82 0.30 -48.71 16 2 C 0.04 2.49 5.40 85.22 0.46 2.95 16 3 Si 0.96 43.48 24.51 68.60 1.68 45.16 16 4 H -0.26 -11.14 6.70 99.48 0.67 -10.47 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.25 -11.20 6.87 99.48 0.68 -10.52 16 7 C -0.48 -28.21 9.55 23.37 0.22 -27.99 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 9 C 0.05 2.44 5.10 -21.27 -0.11 2.33 16 10 C -0.20 -9.65 7.11 22.48 0.16 -9.49 16 11 C -0.13 -5.55 9.14 22.14 0.20 -5.35 16 12 C 0.13 5.10 6.67 38.68 0.26 5.36 16 13 N -0.73 -21.77 5.23 -318.32 -1.67 -23.43 16 14 C 0.12 2.72 2.98 45.02 0.13 2.86 16 15 H 0.11 2.63 6.37 -2.39 -0.02 2.61 16 16 C -0.13 -1.37 6.87 31.65 0.22 -1.15 16 17 C 0.10 0.77 7.78 86.84 0.68 1.44 16 18 N -0.72 -11.95 6.24 -459.69 -2.87 -14.82 16 19 C 0.48 13.40 8.08 87.93 0.71 14.11 16 20 O -0.57 -23.18 18.02 -3.04 -0.05 -23.23 16 21 C -0.06 -2.51 6.30 22.19 0.14 -2.37 16 22 Cl -0.08 -2.80 27.55 -2.72 -0.07 -2.88 16 23 C -0.17 -8.29 9.50 22.49 0.21 -8.08 16 24 H 0.29 14.89 8.30 -92.71 -0.77 14.13 16 25 H 0.10 5.01 4.73 -2.91 -0.01 4.99 16 26 H 0.12 4.66 6.16 -2.91 -0.02 4.64 16 27 H 0.40 10.85 7.06 -92.71 -0.65 10.20 16 28 H 0.09 0.92 7.82 -2.39 -0.02 0.90 16 29 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.41 5.78 8.96 -92.71 -0.83 4.94 16 33 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -73.28 290.59 0.24 -73.04 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.37 Total: 20.23 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 3.29 Total: -25.36 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -4.23 Total: -86.96 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.68 Total: 45.16 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.07 Total: -2.88 kcal Total: -73.28 0.24 -73.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334666758.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.538 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds