Wall clock time and date at job start Tue Mar 31 2020 02:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47425 * 2 1 4 4 C 1.50694 * 109.47545 * 239.99772 * 2 1 3 5 5 H 1.08001 * 120.00019 * 245.48903 * 4 2 1 6 6 C 1.37879 * 119.99851 * 65.48073 * 4 2 1 7 7 N 1.31512 * 119.99756 * 9.57984 * 6 4 2 8 8 Si 1.86801 * 119.99987 * 189.57470 * 6 4 2 9 9 H 1.48503 * 109.46983 * 84.99907 * 8 6 4 10 10 H 1.48501 * 109.47264 * 204.99529 * 8 6 4 11 11 H 1.48502 * 109.47400 * 324.99895 * 8 6 4 12 12 N 1.46501 * 109.46956 * 119.99731 * 2 1 3 13 13 C 1.46501 * 120.00036 * 60.00090 * 12 2 1 14 14 C 1.38019 * 120.00204 * 240.00229 * 12 2 1 15 15 N 1.28910 * 124.82464 * 359.69388 * 14 12 2 16 16 C 1.34813 * 117.87153 * 179.81662 * 15 14 12 17 17 C 1.41166 * 128.70248 * 180.17785 * 16 15 14 18 18 C 1.37179 * 120.48220 * 180.30462 * 17 16 15 19 19 C 1.38723 * 120.61003 * 359.97438 * 18 17 16 20 20 C 1.37913 * 119.94618 * 0.02562 * 19 18 17 21 21 F 1.35100 * 119.91405 * 179.97438 * 20 19 18 22 22 C 1.39442 * 120.16534 * 0.02562 * 20 19 18 23 23 S 1.75799 * 124.82894 * 180.02562 * 14 12 2 24 24 H 1.08999 * 109.46572 * 182.63132 * 1 2 3 25 25 H 1.09001 * 109.46645 * 302.63183 * 1 2 3 26 26 H 1.08999 * 109.46876 * 62.62908 * 1 2 3 27 27 H 0.97003 * 119.99931 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46991 * 89.99814 * 13 12 2 29 29 H 1.08998 * 109.47143 * 209.99505 * 13 12 2 30 30 H 1.09001 * 109.46925 * 329.99840 * 13 12 2 31 31 H 1.07996 * 119.75965 * 0.27872 * 17 16 15 32 32 H 1.07997 * 119.69485 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.02536 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.5783 -1.6373 -1.1337 6 6 1.7951 -0.1772 -2.4795 7 7 1.3005 1.0361 -2.5934 8 14 2.1762 -1.1780 -4.0101 9 1 1.0237 -2.0603 -4.3242 10 1 2.4235 -0.2614 -5.1520 11 1 3.3841 -2.0080 -3.7708 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.8118 -0.0198 2.1048 15 7 3.1836 1.2093 1.9910 16 6 3.9577 1.7264 2.9661 17 6 4.4866 3.0307 3.0748 18 6 5.2674 3.3777 4.1480 19 6 5.5500 2.4543 5.1440 20 6 5.0443 1.1740 5.0593 21 9 5.3203 0.2750 6.0293 22 6 4.2498 0.8047 3.9745 23 16 3.4659 -0.7224 3.5775 24 1 -0.3632 -1.0266 0.0472 25 1 -0.3633 0.5542 0.8655 26 1 -0.3633 0.4725 -0.9126 27 1 1.1339 1.4114 -3.4722 28 1 2.4158 -2.7377 0.9718 29 1 1.6238 -2.2851 2.5003 30 1 0.6904 -2.3001 0.9847 31 1 4.2754 3.7605 2.3074 32 1 5.6652 4.3792 4.2186 33 1 6.1661 2.7375 5.9845 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336198548.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:49 Heat of formation + Delta-G solvation = 17.619604 kcal Electronic energy + Delta-G solvation = -19066.683921 eV Core-core repulsion = 15940.551705 eV Total energy + Delta-G solvation = -3126.132216 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.82703 -39.72750 -37.60066 -35.42264 -32.96496 -30.29933 -29.89146 -29.12489 -26.23694 -25.31144 -23.77914 -22.33873 -21.72504 -19.44247 -18.44813 -16.88620 -16.54749 -16.30359 -15.71260 -15.63820 -15.28790 -14.68851 -14.55917 -14.31207 -13.65515 -13.26932 -13.21543 -12.76689 -12.30237 -11.84659 -11.82482 -11.64970 -11.51677 -11.08452 -11.02581 -10.87815 -10.75700 -10.44885 -10.26075 -9.75922 -9.48590 -8.99684 -8.90670 -8.51399 -7.81879 -7.02796 -6.19127 -4.26072 0.91770 1.21300 1.35972 1.94421 2.77638 3.21024 3.28388 3.29663 3.43661 3.94561 4.29865 4.32345 4.73683 4.92423 5.10302 5.13351 5.41065 5.43092 5.65346 5.79920 6.03909 6.04704 6.15592 6.38401 6.45498 6.52057 6.60760 6.76339 6.87939 7.04097 7.34715 7.61004 7.77063 7.92908 8.10892 8.40350 8.77073 9.38910 10.86905 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.004881 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.495327 B = 5734.680140 C = 6226.874043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.264 3.736 3 H 0.079 0.921 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.071 3.929 7 N -0.882 5.882 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.539 5.539 13 C 0.090 3.910 14 C 0.412 3.588 15 N -0.557 5.557 16 C 0.188 3.812 17 C -0.110 4.110 18 C -0.070 4.070 19 C -0.183 4.183 20 C 0.161 3.839 21 F -0.140 7.140 22 C -0.253 4.253 23 S 0.013 5.987 24 H 0.034 0.966 25 H 0.019 0.981 26 H 0.081 0.919 27 H 0.265 0.735 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 0.024 12.214 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.097 0.903 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.133 4.133 7 N -0.518 5.518 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.250 5.250 13 C -0.053 4.053 14 C 0.036 3.964 15 N -0.284 5.284 16 C 0.064 3.936 17 C -0.132 4.132 18 C -0.092 4.092 19 C -0.205 4.205 20 C 0.136 3.864 21 F -0.118 7.118 22 C -0.374 4.374 23 S 0.262 5.738 24 H 0.053 0.947 25 H 0.038 0.962 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.384 -0.794 11.886 12.384 hybrid contribution 0.524 0.041 -0.743 0.910 sum 3.908 -0.752 11.143 11.832 Atomic orbital electron populations 1.22082 0.98105 0.99215 1.00831 1.19281 0.90622 0.95098 0.78695 0.90318 1.21226 1.37205 1.08802 0.90098 0.92100 1.24872 0.94904 0.94617 0.98932 1.69959 1.43916 1.13614 1.24361 0.86528 0.78773 0.79993 0.82255 1.20380 1.21081 1.19930 1.47082 1.46329 1.10669 1.20945 1.21744 1.02546 0.81103 0.99923 1.24103 0.91928 0.89645 0.90731 1.66428 1.23230 1.10316 1.28452 1.18855 0.93186 0.94321 0.87222 1.20639 0.99354 0.93647 0.99579 1.20624 0.96785 0.99174 0.92586 1.20774 1.05686 0.91630 1.02418 1.16639 0.97441 0.87348 0.84940 1.91480 1.92056 1.67206 1.61076 1.23333 1.12001 0.99078 1.03021 1.84745 1.53473 1.12543 1.23043 0.94657 0.96192 0.90032 0.92472 0.92121 0.92637 0.89331 0.84583 0.84570 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.09 37.16 0.34 -2.84 16 2 C 0.26 6.37 2.56 -69.08 -0.18 6.19 16 3 H 0.08 2.18 7.04 -51.93 -0.37 1.81 16 4 C -0.53 -13.84 8.33 -34.44 -0.29 -14.13 16 5 H 0.06 1.57 7.53 -52.49 -0.40 1.17 16 6 C 0.07 1.86 5.18 -17.82 -0.09 1.77 16 7 N -0.88 -24.20 12.16 55.43 0.67 -23.52 16 8 Si 0.90 20.39 29.55 -169.99 -5.02 15.37 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.54 -11.20 2.84 -176.47 -0.50 -11.70 16 13 C 0.09 1.49 9.60 59.85 0.57 2.06 16 14 C 0.41 8.49 7.88 -88.88 -0.70 7.79 16 15 N -0.56 -12.15 9.52 -11.16 -0.11 -12.26 16 16 C 0.19 3.56 6.94 -84.90 -0.59 2.97 16 17 C -0.11 -1.70 10.10 -38.86 -0.39 -2.09 16 18 C -0.07 -0.86 9.99 -39.79 -0.40 -1.25 16 19 C -0.18 -2.31 10.02 -39.52 -0.40 -2.71 16 20 C 0.16 2.49 7.31 -39.25 -0.29 2.20 16 21 F -0.14 -2.13 17.26 2.25 0.04 -2.09 16 22 C -0.25 -4.50 6.50 -38.59 -0.25 -4.75 16 23 S 0.01 0.23 21.89 -107.50 -2.35 -2.12 16 24 H 0.03 0.70 6.56 -51.93 -0.34 0.36 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 1.98 6.85 -51.93 -0.36 1.62 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 29 H 0.06 0.78 7.04 -51.93 -0.37 0.41 16 30 H 0.09 1.39 6.38 -51.93 -0.33 1.06 16 31 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 298.16 15.07 4.49 4.49 Total: -1.00 -28.77 298.16 -8.83 -37.60 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.40 Total: -0.98 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.66 Total: -4.79 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.07 Total: -47.48 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.35 Total: -2.12 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.77 -8.83 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336198548.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.225 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds