Wall clock time and date at job start Tue Mar 31 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47425 * 2 1 4 4 C 1.50694 * 109.47545 * 239.99772 * 2 1 3 5 5 H 1.08001 * 120.00019 * 245.48903 * 4 2 1 6 6 C 1.37879 * 119.99851 * 65.48073 * 4 2 1 7 7 N 1.31512 * 119.99756 * 9.57984 * 6 4 2 8 8 Si 1.86801 * 119.99987 * 189.57470 * 6 4 2 9 9 H 1.48503 * 109.46983 * 84.99907 * 8 6 4 10 10 H 1.48501 * 109.47264 * 204.99529 * 8 6 4 11 11 H 1.48502 * 109.47400 * 324.99895 * 8 6 4 12 12 N 1.46501 * 109.46956 * 119.99731 * 2 1 3 13 13 C 1.46501 * 120.00036 * 60.00090 * 12 2 1 14 14 C 1.38019 * 120.00204 * 240.00229 * 12 2 1 15 15 N 1.28910 * 124.82464 * 359.69388 * 14 12 2 16 16 C 1.34813 * 117.87153 * 179.81662 * 15 14 12 17 17 C 1.41166 * 128.70248 * 180.17785 * 16 15 14 18 18 C 1.37179 * 120.48220 * 180.30462 * 17 16 15 19 19 C 1.38723 * 120.61003 * 359.97438 * 18 17 16 20 20 C 1.37913 * 119.94618 * 0.02562 * 19 18 17 21 21 F 1.35100 * 119.91405 * 179.97438 * 20 19 18 22 22 C 1.39442 * 120.16534 * 0.02562 * 20 19 18 23 23 S 1.75799 * 124.82894 * 180.02562 * 14 12 2 24 24 H 1.08999 * 109.46572 * 182.63132 * 1 2 3 25 25 H 1.09001 * 109.46645 * 302.63183 * 1 2 3 26 26 H 1.08999 * 109.46876 * 62.62908 * 1 2 3 27 27 H 0.97003 * 119.99931 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46991 * 89.99814 * 13 12 2 29 29 H 1.08998 * 109.47143 * 209.99505 * 13 12 2 30 30 H 1.09001 * 109.46925 * 329.99840 * 13 12 2 31 31 H 1.07996 * 119.75965 * 0.27872 * 17 16 15 32 32 H 1.07997 * 119.69485 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.02536 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.5783 -1.6373 -1.1337 6 6 1.7951 -0.1772 -2.4795 7 7 1.3005 1.0361 -2.5934 8 14 2.1762 -1.1780 -4.0101 9 1 1.0237 -2.0603 -4.3242 10 1 2.4235 -0.2614 -5.1520 11 1 3.3841 -2.0080 -3.7708 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.8118 -0.0198 2.1048 15 7 3.1836 1.2093 1.9910 16 6 3.9577 1.7264 2.9661 17 6 4.4866 3.0307 3.0748 18 6 5.2674 3.3777 4.1480 19 6 5.5500 2.4543 5.1440 20 6 5.0443 1.1740 5.0593 21 9 5.3203 0.2750 6.0293 22 6 4.2498 0.8047 3.9745 23 16 3.4659 -0.7224 3.5775 24 1 -0.3632 -1.0266 0.0472 25 1 -0.3633 0.5542 0.8655 26 1 -0.3633 0.4725 -0.9126 27 1 1.1339 1.4114 -3.4722 28 1 2.4158 -2.7377 0.9718 29 1 1.6238 -2.2851 2.5003 30 1 0.6904 -2.3001 0.9847 31 1 4.2754 3.7605 2.3074 32 1 5.6652 4.3792 4.2186 33 1 6.1661 2.7375 5.9845 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336198548.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:48 Heat of formation + Delta-G solvation = 2.372436 kcal Electronic energy + Delta-G solvation = -19067.345088 eV Core-core repulsion = 15940.551705 eV Total energy + Delta-G solvation = -3126.793383 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.00541 -41.05906 -39.06017 -36.84012 -34.81594 -31.66636 -31.45056 -30.45345 -27.61275 -27.26386 -25.16522 -23.70707 -23.10116 -21.02328 -19.74885 -18.46338 -18.24839 -17.54769 -17.07091 -16.88442 -16.69645 -16.35268 -16.01305 -15.57793 -15.19177 -14.66931 -14.54950 -14.35416 -13.66497 -13.49466 -13.20452 -12.96225 -12.94695 -12.72590 -12.70871 -12.54839 -12.26185 -12.10399 -12.08155 -11.30132 -11.01229 -10.58585 -10.41231 -10.36817 -9.08331 -8.52972 -8.14197 -6.31871 -0.37470 -0.04283 0.02617 0.57938 1.41571 1.41983 1.46646 1.51766 2.01469 2.41149 2.69069 3.10644 3.14696 3.41740 3.81914 3.95026 4.17611 4.31196 4.48532 4.56970 4.63642 4.80991 4.86042 4.92779 4.95857 5.01245 5.17411 5.33272 5.40477 5.49230 5.68517 5.79478 6.01519 6.09309 6.32768 6.74939 7.00683 7.37024 8.87428 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.004881 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.495327 B = 5734.680140 C = 6226.874043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.273 3.727 3 H 0.033 0.967 4 C -0.543 4.543 5 H 0.059 0.941 6 C 0.024 3.976 7 N -0.914 5.914 8 Si 0.960 3.040 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.555 5.555 13 C 0.089 3.911 14 C 0.384 3.616 15 N -0.597 5.597 16 C 0.147 3.853 17 C -0.122 4.122 18 C -0.049 4.049 19 C -0.156 4.156 20 C 0.143 3.857 21 F -0.140 7.140 22 C -0.272 4.272 23 S 0.052 5.948 24 H 0.055 0.945 25 H 0.025 0.975 26 H 0.056 0.944 27 H 0.266 0.734 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.185 0.815 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 0.038 13.925 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.170 3.830 3 H 0.051 0.949 4 C -0.582 4.582 5 H 0.077 0.923 6 C -0.177 4.177 7 N -0.552 5.552 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.268 5.268 13 C -0.053 4.053 14 C 0.009 3.991 15 N -0.325 5.325 16 C 0.025 3.975 17 C -0.144 4.144 18 C -0.070 4.070 19 C -0.178 4.178 20 C 0.118 3.882 21 F -0.118 7.118 22 C -0.392 4.392 23 S 0.301 5.699 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.156 0.844 32 H 0.202 0.798 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.787 -0.780 13.644 14.481 hybrid contribution 0.249 0.182 -1.081 1.125 sum 5.036 -0.598 12.563 13.548 Atomic orbital electron populations 1.21877 0.96968 1.00255 0.99748 1.18809 0.91373 0.92981 0.79853 0.94910 1.21501 1.36903 1.08642 0.91142 0.92327 1.25643 0.94892 0.95416 1.01762 1.70086 1.45168 1.15050 1.24868 0.85553 0.78796 0.78548 0.78620 1.19140 1.21191 1.19813 1.46907 1.47445 1.11918 1.20535 1.21909 1.02788 0.78981 1.01599 1.24277 0.92603 0.90108 0.92116 1.66404 1.24095 1.11603 1.30429 1.19213 0.94649 0.96023 0.87591 1.20978 0.99894 0.92511 1.01037 1.21162 0.94325 1.01055 0.90429 1.21350 1.03581 0.89912 1.02944 1.16922 0.98025 0.88581 0.84641 1.91480 1.92050 1.67460 1.60832 1.23623 1.12813 0.99008 1.03789 1.84361 1.52830 1.12154 1.20560 0.92603 0.95543 0.92538 0.92537 0.91952 0.90271 0.88719 0.84387 0.79753 0.80359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 9.09 71.98 0.65 -5.25 16 2 C 0.27 13.68 2.56 44.24 0.11 13.79 16 3 H 0.03 1.94 7.04 -2.39 -0.02 1.92 16 4 C -0.54 -28.82 8.33 25.60 0.21 -28.61 16 5 H 0.06 3.06 7.53 -2.91 -0.02 3.04 16 6 C 0.02 1.26 5.18 84.66 0.44 1.70 16 7 N -0.91 -51.80 12.16 21.45 0.26 -51.54 16 8 Si 0.96 42.28 29.55 68.60 2.03 44.30 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.56 -23.68 2.84 -712.21 -2.02 -25.71 16 13 C 0.09 2.92 9.60 127.77 1.23 4.15 16 14 C 0.38 16.33 7.88 179.74 1.42 17.75 16 15 N -0.60 -27.18 9.52 -189.22 -1.80 -28.99 16 16 C 0.15 5.62 6.94 39.76 0.28 5.90 16 17 C -0.12 -3.63 10.10 22.74 0.23 -3.40 16 18 C -0.05 -1.00 9.99 22.14 0.22 -0.78 16 19 C -0.16 -3.27 10.02 22.31 0.22 -3.04 16 20 C 0.14 4.09 7.31 22.48 0.16 4.25 16 21 F -0.14 -3.93 17.26 44.97 0.78 -3.15 16 22 C -0.27 -9.48 6.50 22.91 0.15 -9.33 16 23 S 0.05 1.81 21.89 -56.49 -1.24 0.57 16 24 H 0.06 2.25 6.56 -2.39 -0.02 2.23 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 2.84 6.85 -2.39 -0.02 2.82 16 27 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.06 1.98 8.09 -2.38 -0.02 1.96 16 29 H 0.08 2.16 7.04 -2.39 -0.02 2.14 16 30 H 0.09 2.91 6.38 -2.39 -0.02 2.90 16 31 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.19 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -65.52 298.16 4.47 -61.05 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.14 Total: 6.34 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.33 Total: -2.88 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.56 Total: -106.23 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.24 Total: 0.57 kcal Total: -65.52 4.47 -61.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336198548.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.426 kcal (2) G-P(sol) polarization free energy of solvation -65.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds