Wall clock time and date at job start Tue Mar 31 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46845 * 119.99620 * 2 1 3 5 5 H 1.07999 * 119.99803 * 119.99749 * 4 2 1 6 6 C 1.37875 * 120.00142 * 300.00313 * 4 2 1 7 7 N 1.31516 * 119.99788 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00006 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47352 * 90.00294 * 8 6 4 10 10 H 1.48501 * 109.46796 * 210.00194 * 8 6 4 11 11 H 1.48502 * 109.47137 * 329.99826 * 8 6 4 12 12 N 1.46496 * 109.47112 * 239.99919 * 2 1 3 13 13 C 1.46506 * 119.99759 * 299.99885 * 12 2 1 14 14 C 1.38005 * 120.00234 * 120.00460 * 12 2 1 15 15 N 1.28910 * 124.83003 * 179.97438 * 14 12 2 16 16 C 1.34813 * 117.87382 * 179.97438 * 15 14 12 17 17 C 1.41170 * 128.70357 * 180.02562 * 16 15 14 18 18 C 1.37180 * 120.48104 * 179.97438 * 17 16 15 19 19 C 1.38714 * 120.61346 * 359.97438 * 18 17 16 20 20 C 1.37918 * 119.94394 * 0.02562 * 19 18 17 21 21 F 1.35105 * 119.91260 * 179.97438 * 20 19 18 22 22 C 1.39444 * 120.16679 * 359.97438 * 20 19 18 23 23 S 1.75814 * 124.82698 * 359.69152 * 14 12 2 24 24 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47223 * 300.00224 * 1 2 3 26 26 H 1.09001 * 109.47080 * 60.00198 * 1 2 3 27 27 H 0.97002 * 119.99313 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47060 * 90.00688 * 13 12 2 29 29 H 1.09004 * 109.47073 * 210.00177 * 13 12 2 30 30 H 1.09000 * 109.47212 * 330.00260 * 13 12 2 31 31 H 1.08003 * 119.75999 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.69051 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.02869 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8021 0.8747 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8491 2.1774 1.4922 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.8118 -0.0200 -2.1045 15 7 3.2915 -0.5353 -3.1844 16 6 4.0518 0.2498 -3.9737 17 6 4.6844 -0.0734 -5.1936 18 6 5.4257 0.8665 -5.8636 19 6 5.5659 2.1494 -5.3549 20 6 4.9571 2.4884 -4.1647 21 9 5.0945 3.7379 -3.6696 22 6 4.2001 1.5448 -3.4712 23 16 3.3064 1.6607 -1.9572 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9030 -0.5278 4.4376 28 1 0.7376 -2.1445 -1.9993 29 1 2.4629 -2.5820 -1.9862 30 1 1.5294 -2.5969 -0.4707 31 1 4.5841 -1.0680 -5.6025 32 1 5.9038 0.6055 -6.7961 33 1 6.1520 2.8819 -5.8900 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336198550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:51 Heat of formation + Delta-G solvation = 24.294592 kcal Electronic energy + Delta-G solvation = -19132.307318 eV Core-core repulsion = 16006.464551 eV Total energy + Delta-G solvation = -3125.842767 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.84221 -39.82614 -37.79967 -35.68475 -32.92054 -30.74041 -30.35936 -28.98165 -26.75550 -25.39534 -23.84559 -22.65338 -21.12296 -20.04848 -18.36414 -17.33621 -16.60456 -16.43004 -16.00465 -15.68896 -15.30369 -15.04931 -14.58069 -14.34225 -13.68164 -13.36475 -13.23609 -12.96998 -12.46769 -12.32769 -12.10444 -11.68895 -11.64198 -11.48295 -11.36198 -10.92586 -10.90962 -10.36072 -9.86932 -9.78481 -9.66764 -9.26319 -9.09032 -8.84819 -7.83936 -7.13915 -6.36342 -4.41178 0.83630 1.14518 1.33779 1.97698 2.65369 3.06795 3.16517 3.21303 3.28502 3.82849 4.12965 4.28259 4.58568 4.86299 4.93242 5.02284 5.33271 5.51521 5.73295 5.88238 5.91973 5.98372 6.03884 6.06362 6.13631 6.27424 6.34919 6.37730 6.46452 6.71521 6.81985 7.13530 7.29064 7.62393 8.10271 8.26631 8.65321 9.20559 10.75526 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.005374 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.946018 B = 5209.135956 C = 5829.461950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.240 3.760 3 H 0.046 0.954 4 C -0.539 4.539 5 H 0.086 0.914 6 C 0.083 3.917 7 N -0.883 5.883 8 Si 0.878 3.122 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.264 1.264 12 N -0.534 5.534 13 C 0.100 3.900 14 C 0.405 3.595 15 N -0.577 5.577 16 C 0.183 3.817 17 C -0.113 4.113 18 C -0.071 4.071 19 C -0.181 4.181 20 C 0.163 3.837 21 F -0.137 7.137 22 C -0.260 4.260 23 S 0.060 5.940 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.270 0.730 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 3.482 -14.913 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.138 3.862 3 H 0.063 0.937 4 C -0.577 4.577 5 H 0.104 0.896 6 C -0.122 4.122 7 N -0.518 5.518 8 Si 0.707 3.293 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.189 1.189 12 N -0.245 5.245 13 C -0.045 4.045 14 C 0.030 3.970 15 N -0.306 5.306 16 C 0.059 3.941 17 C -0.135 4.135 18 C -0.093 4.093 19 C -0.203 4.203 20 C 0.139 3.861 21 F -0.116 7.116 22 C -0.381 4.381 23 S 0.311 5.689 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.567 3.637 -13.757 14.316 hybrid contribution -0.194 0.751 -0.259 0.818 sum 1.374 4.388 -14.016 14.751 Atomic orbital electron populations 1.22495 0.97774 1.02141 0.99833 1.19545 0.91150 0.93078 0.82444 0.93653 1.21054 1.33775 1.15034 0.87869 0.89606 1.24841 0.95363 0.96545 0.95482 1.69850 1.44111 1.39727 0.98151 0.86994 0.80817 0.83548 0.77920 1.19898 1.21576 1.18920 1.46612 1.46690 1.11571 1.19620 1.21695 0.99902 0.80249 1.02640 1.23983 0.91681 0.91318 0.90032 1.66429 1.22263 1.34854 1.07091 1.18735 0.94083 0.86613 0.94682 1.20549 0.99306 1.00544 0.93070 1.20609 0.97410 0.91843 0.99399 1.20796 1.04993 0.98698 0.95862 1.16668 0.97861 0.78445 0.93146 1.91498 1.94145 1.38465 1.87479 1.23582 1.11786 0.99704 1.03054 1.85337 1.52000 1.11586 1.20025 0.91678 0.92485 0.94328 0.91985 0.93348 0.91105 0.89310 0.84887 0.84608 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.67 37.16 0.32 -2.92 16 2 C 0.24 5.27 2.26 -69.08 -0.16 5.11 16 3 H 0.05 1.04 5.39 -51.93 -0.28 0.76 16 4 C -0.54 -13.86 8.57 -34.44 -0.30 -14.16 16 5 H 0.09 2.42 7.58 -52.49 -0.40 2.02 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.88 -25.09 13.96 55.43 0.77 -24.31 16 8 Si 0.88 20.06 24.37 -169.99 -4.14 15.91 16 9 H -0.27 -5.97 6.87 56.52 0.39 -5.58 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.26 -5.80 6.53 56.52 0.37 -5.43 16 12 N -0.53 -10.78 2.84 -176.46 -0.50 -11.28 16 13 C 0.10 1.73 9.54 59.85 0.57 2.30 16 14 C 0.41 8.10 7.87 -88.90 -0.70 7.40 16 15 N -0.58 -11.07 9.79 -11.16 -0.11 -11.18 16 16 C 0.18 3.18 6.94 -84.90 -0.59 2.59 16 17 C -0.11 -1.53 10.10 -38.85 -0.39 -1.92 16 18 C -0.07 -0.79 9.99 -39.79 -0.40 -1.18 16 19 C -0.18 -2.20 10.02 -39.52 -0.40 -2.59 16 20 C 0.16 2.52 7.31 -39.25 -0.29 2.23 16 21 F -0.14 -2.16 17.27 2.25 0.04 -2.12 16 22 C -0.26 -4.59 6.50 -38.59 -0.25 -4.84 16 23 S 0.06 1.15 21.58 -107.50 -2.32 -1.17 16 24 H 0.06 1.21 7.67 -51.93 -0.40 0.81 16 25 H 0.06 1.17 3.27 -51.93 -0.17 1.00 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.19 7.60 -51.93 -0.39 0.80 16 30 H 0.09 1.59 7.02 -51.93 -0.36 1.23 16 31 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 290.83 15.07 4.38 4.38 Total: -1.00 -28.48 290.83 -7.85 -36.33 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -3.30 Total: -0.68 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -2.67 Total: -5.88 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.16 Total: -46.77 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.14 Total: 15.91 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.32 Total: -1.17 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.48 -7.85 -36.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336198550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.624 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds