Wall clock time and date at job start Tue Mar 31 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.50703 * 109.46845 * 119.99620 * 2 1 3 5 5 H 1.07999 * 119.99803 * 119.99749 * 4 2 1 6 6 C 1.37875 * 120.00142 * 300.00313 * 4 2 1 7 7 N 1.31516 * 119.99788 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00006 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47352 * 90.00294 * 8 6 4 10 10 H 1.48501 * 109.46796 * 210.00194 * 8 6 4 11 11 H 1.48502 * 109.47137 * 329.99826 * 8 6 4 12 12 N 1.46496 * 109.47112 * 239.99919 * 2 1 3 13 13 C 1.46506 * 119.99759 * 299.99885 * 12 2 1 14 14 C 1.38005 * 120.00234 * 120.00460 * 12 2 1 15 15 N 1.28910 * 124.83003 * 179.97438 * 14 12 2 16 16 C 1.34813 * 117.87382 * 179.97438 * 15 14 12 17 17 C 1.41170 * 128.70357 * 180.02562 * 16 15 14 18 18 C 1.37180 * 120.48104 * 179.97438 * 17 16 15 19 19 C 1.38714 * 120.61346 * 359.97438 * 18 17 16 20 20 C 1.37918 * 119.94394 * 0.02562 * 19 18 17 21 21 F 1.35105 * 119.91260 * 179.97438 * 20 19 18 22 22 C 1.39444 * 120.16679 * 359.97438 * 20 19 18 23 23 S 1.75814 * 124.82698 * 359.69152 * 14 12 2 24 24 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47223 * 300.00224 * 1 2 3 26 26 H 1.09001 * 109.47080 * 60.00198 * 1 2 3 27 27 H 0.97002 * 119.99313 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47060 * 90.00688 * 13 12 2 29 29 H 1.09004 * 109.47073 * 210.00177 * 13 12 2 30 30 H 1.09000 * 109.47212 * 330.00260 * 13 12 2 31 31 H 1.08003 * 119.75999 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.69051 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.02869 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8021 0.8747 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8491 2.1774 1.4922 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.8118 -0.0200 -2.1045 15 7 3.2915 -0.5353 -3.1844 16 6 4.0518 0.2498 -3.9737 17 6 4.6844 -0.0734 -5.1936 18 6 5.4257 0.8665 -5.8636 19 6 5.5659 2.1494 -5.3549 20 6 4.9571 2.4884 -4.1647 21 9 5.0945 3.7379 -3.6696 22 6 4.2001 1.5448 -3.4712 23 16 3.3064 1.6607 -1.9572 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9030 -0.5278 4.4376 28 1 0.7376 -2.1445 -1.9993 29 1 2.4629 -2.5820 -1.9862 30 1 1.5294 -2.5969 -0.4707 31 1 4.5841 -1.0680 -5.6025 32 1 5.9038 0.6055 -6.7961 33 1 6.1520 2.8819 -5.8900 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336198550.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:51 Heat of formation + Delta-G solvation = 7.802027 kcal Electronic energy + Delta-G solvation = -19133.022489 eV Core-core repulsion = 16006.464551 eV Total energy + Delta-G solvation = -3126.557938 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.074 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01405 -41.09738 -39.23590 -37.03587 -34.77825 -32.40502 -31.48212 -30.24853 -28.15954 -27.26894 -25.15981 -23.90540 -22.54149 -21.50020 -19.70009 -19.05417 -18.14199 -17.67336 -17.42418 -16.91179 -16.65058 -16.49044 -16.00013 -15.66810 -15.19224 -14.92519 -14.49974 -14.42737 -14.14534 -13.77659 -13.43743 -13.21847 -12.99543 -12.75387 -12.69137 -12.63036 -12.30420 -12.00751 -11.59448 -11.49301 -11.04600 -10.86625 -10.69740 -10.46077 -9.11941 -8.54587 -8.40582 -6.49266 -0.40995 -0.05514 0.02543 0.62134 1.25925 1.33400 1.37985 1.41022 1.81330 2.21984 2.66609 2.92882 3.15572 3.34046 3.81558 3.94007 4.16267 4.30403 4.34314 4.40927 4.52734 4.55707 4.67206 4.79568 4.88490 4.96679 5.00767 5.17327 5.23954 5.32678 5.34713 5.62718 5.80945 6.06374 6.25667 6.54748 6.78962 7.16652 8.74927 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.005374 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.946018 B = 5209.135956 C = 5829.461950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.245 3.755 3 H 0.039 0.961 4 C -0.536 4.536 5 H 0.046 0.954 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.934 3.066 9 H -0.252 1.252 10 H -0.294 1.294 11 H -0.250 1.250 12 N -0.549 5.549 13 C 0.105 3.895 14 C 0.389 3.611 15 N -0.579 5.579 16 C 0.144 3.856 17 C -0.110 4.110 18 C -0.051 4.051 19 C -0.154 4.154 20 C 0.135 3.865 21 F -0.144 7.144 22 C -0.270 4.270 23 S 0.021 5.979 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.271 0.729 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.189 0.811 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 4.524 -18.443 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.142 3.858 3 H 0.056 0.944 4 C -0.574 4.574 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.759 3.241 9 H -0.177 1.177 10 H -0.221 1.221 11 H -0.175 1.175 12 N -0.262 5.262 13 C -0.039 4.039 14 C 0.014 3.986 15 N -0.308 5.308 16 C 0.023 3.977 17 C -0.131 4.131 18 C -0.072 4.072 19 C -0.175 4.175 20 C 0.111 3.889 21 F -0.123 7.123 22 C -0.391 4.391 23 S 0.270 5.730 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.172 0.828 32 H 0.206 0.794 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.888 4.676 -17.359 18.076 hybrid contribution -0.045 0.401 0.576 0.704 sum 1.844 5.078 -16.782 17.630 Atomic orbital electron populations 1.22387 0.95626 1.03009 1.00674 1.19295 0.92673 0.92207 0.81639 0.94392 1.21225 1.32631 1.13762 0.89830 0.93605 1.25624 0.96777 0.99516 0.95038 1.69991 1.46366 1.41922 0.98792 0.86087 0.80015 0.80020 0.77941 1.17722 1.22086 1.17451 1.46470 1.47872 1.12301 1.19556 1.21700 1.00966 0.79067 1.02122 1.24024 0.92486 0.91487 0.90636 1.66399 1.22041 1.35416 1.06930 1.19219 0.95634 0.86560 0.96281 1.21003 0.98378 1.02264 0.91476 1.21224 0.95308 0.90361 1.00293 1.21385 1.02494 0.99880 0.93774 1.17063 0.99165 0.78142 0.94558 1.91479 1.94289 1.38729 1.87819 1.23699 1.12485 1.00697 1.02170 1.85260 1.53234 1.12099 1.22368 0.90910 0.92980 0.91916 0.91942 0.91062 0.91009 0.90760 0.82831 0.79382 0.80646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.09 8.67 71.98 0.62 -5.47 16 2 C 0.24 10.90 2.26 44.25 0.10 11.00 16 3 H 0.04 1.77 5.39 -2.39 -0.01 1.76 16 4 C -0.54 -28.67 8.57 25.60 0.22 -28.45 16 5 H 0.05 2.75 7.58 -2.91 -0.02 2.73 16 6 C 0.03 1.68 5.45 84.65 0.46 2.14 16 7 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 8 Si 0.93 41.53 24.37 68.60 1.67 43.20 16 9 H -0.25 -10.33 6.87 99.48 0.68 -9.65 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.25 -10.50 6.53 99.48 0.65 -9.85 16 12 N -0.55 -22.57 2.84 -712.20 -2.02 -24.59 16 13 C 0.11 3.72 9.54 127.77 1.22 4.94 16 14 C 0.39 15.81 7.87 179.75 1.41 17.22 16 15 N -0.58 -22.09 9.79 -189.22 -1.85 -23.94 16 16 C 0.14 4.84 6.94 39.76 0.28 5.11 16 17 C -0.11 -2.57 10.10 22.74 0.23 -2.34 16 18 C -0.05 -0.84 9.99 22.13 0.22 -0.62 16 19 C -0.15 -2.99 10.02 22.31 0.22 -2.76 16 20 C 0.14 3.89 7.31 22.48 0.16 4.06 16 21 F -0.14 -4.37 17.27 44.97 0.78 -3.60 16 22 C -0.27 -9.35 6.50 22.91 0.15 -9.20 16 23 S 0.02 0.82 21.58 -56.49 -1.22 -0.39 16 24 H 0.07 2.63 7.67 -2.39 -0.02 2.62 16 25 H 0.05 2.04 3.27 -2.39 -0.01 2.03 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.46 7.60 -2.38 -0.02 2.44 16 30 H 0.07 2.78 7.02 -2.39 -0.02 2.77 16 31 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -65.50 290.83 4.02 -61.48 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.06 Total: 7.06 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 5.30 Total: -4.37 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -3.58 Total: -103.38 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.78 Total: -3.60 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.67 Total: 43.20 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.22 Total: -0.39 kcal Total: -65.50 4.02 -61.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336198550.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.286 kcal (2) G-P(sol) polarization free energy of solvation -65.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds