Wall clock time and date at job start Tue Mar 31 2020 01:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99624 * 2 1 4 4 H 1.48495 * 109.47582 * 270.00060 * 3 2 1 5 5 H 1.48502 * 109.47340 * 30.00766 * 3 2 1 6 6 H 1.48512 * 109.46772 * 150.00328 * 3 2 1 7 7 C 1.37873 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00410 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00006 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00103 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99587 * 5.02401 * 11 10 9 13 13 N 1.34775 * 120.00313 * 185.01758 * 11 10 9 14 14 C 1.46533 * 124.97881 * 354.92292 * 13 11 10 15 15 C 1.53738 * 105.20154 * 180.02562 * 14 13 11 16 16 C 1.51223 * 104.58534 * 359.97438 * 15 14 13 17 17 C 1.38194 * 130.95163 * 180.02562 * 16 15 14 18 18 C 1.38207 * 120.16836 * 179.72663 * 17 16 15 19 19 C 1.38419 * 119.80672 * 0.55230 * 18 17 16 20 20 Cl 1.73599 * 119.89758 * 179.72617 * 19 18 17 21 21 C 1.37957 * 120.19589 * 359.44419 * 19 18 17 22 22 C 1.38566 * 108.55856 * 0.02562 * 16 15 14 23 23 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46859 * 59.99940 * 9 7 2 25 25 H 1.08992 * 109.47218 * 299.99783 * 9 7 2 26 26 H 0.97001 * 120.00058 * 0.02562 * 10 9 7 27 27 H 1.09000 * 110.30256 * 61.08490 * 14 13 11 28 28 H 1.09008 * 110.29756 * 298.94567 * 14 13 11 29 29 H 1.09007 * 110.41023 * 241.22209 * 15 14 13 30 30 H 1.08994 * 110.41815 * 118.77216 * 15 14 13 31 31 H 1.08004 * 119.91753 * 0.02562 * 17 16 15 32 32 H 1.07995 * 120.09674 * 180.30181 * 18 17 16 33 33 H 1.07999 * 119.85789 * 180.29693 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0020 12 8 6.1144 -1.9011 0.0893 13 7 5.7751 -4.0877 -0.1040 14 6 4.9268 -5.2825 -0.1129 15 6 5.8990 -6.4661 -0.2454 16 6 7.2692 -5.8288 -0.3038 17 6 8.5257 -6.3918 -0.4217 18 6 9.6474 -5.5852 -0.4593 19 6 9.5101 -4.2110 -0.3670 20 17 10.9180 -3.1961 -0.4069 21 6 8.2574 -3.6451 -0.2493 22 6 7.1201 -4.4539 -0.2165 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6803 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.3696 -3.3125 -0.0010 27 1 4.2452 -5.2561 -0.9630 28 1 4.3670 -5.3558 0.8195 29 1 5.6991 -7.0216 -1.1617 30 1 5.8209 -7.1213 0.6222 31 1 8.6311 -7.4645 -0.4895 32 1 10.6285 -6.0262 -0.5564 33 1 8.1563 -2.5720 -0.1825 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336363932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:15 Heat of formation + Delta-G solvation = -3.860947 kcal Electronic energy + Delta-G solvation = -18922.223798 eV Core-core repulsion = 15780.743619 eV Total energy + Delta-G solvation = -3141.480179 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.15031 -38.80962 -37.02908 -35.80213 -34.54082 -32.50217 -32.26506 -30.12739 -28.97171 -27.73984 -23.77015 -23.36513 -21.92181 -21.41905 -19.97979 -18.37656 -16.77211 -16.49258 -16.35645 -16.02269 -15.22101 -14.91886 -14.53651 -14.26813 -13.77760 -13.48162 -13.42347 -13.00300 -12.69704 -12.65228 -12.41759 -12.06142 -11.88641 -11.57108 -11.38159 -11.06915 -10.98702 -10.82649 -10.14091 -10.02687 -9.76924 -9.55136 -8.86283 -8.79058 -8.38702 -7.73140 -6.26946 -4.30099 1.03898 1.24005 2.01941 2.69953 3.23636 3.29313 3.31242 3.39347 3.71501 4.14766 4.28951 4.35277 4.53678 4.86226 4.88712 4.99888 5.08557 5.11130 5.34383 5.37552 5.56770 5.66273 5.70989 5.99557 6.13913 6.21809 6.30957 6.61336 6.84905 6.99483 7.08543 7.19305 7.35653 8.11791 8.43560 8.68964 8.88325 9.32359 10.84785 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.004233 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.634014 B = 6612.656691 C = 7758.197810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.236 3.764 10 N -0.710 5.710 11 C 0.704 3.296 12 O -0.577 6.577 13 N -0.571 5.571 14 C 0.096 3.904 15 C -0.080 4.080 16 C -0.147 4.147 17 C -0.064 4.064 18 C -0.146 4.146 19 C -0.005 4.005 20 Cl -0.071 7.071 21 C -0.132 4.132 22 C 0.196 3.804 23 H 0.269 0.731 24 H 0.028 0.972 25 H 0.021 0.979 26 H 0.395 0.605 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.681 -15.312 -0.993 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.114 3.886 10 N -0.361 5.361 11 C 0.405 3.595 12 O -0.454 6.454 13 N -0.297 5.297 14 C -0.026 4.026 15 C -0.117 4.117 16 C -0.151 4.151 17 C -0.083 4.083 18 C -0.166 4.166 19 C -0.032 4.032 20 Cl -0.042 7.042 21 C -0.154 4.154 22 C 0.097 3.903 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.229 0.771 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 15.977 -14.212 -0.919 21.404 hybrid contribution 0.010 0.687 -0.017 0.688 sum 15.988 -13.525 -0.936 20.962 Atomic orbital electron populations 1.69866 1.06207 1.27555 1.49117 1.24755 0.94787 0.99142 0.93732 0.86830 0.80640 0.83187 0.79147 1.19763 1.20785 1.18405 1.21031 0.88260 0.95301 1.53769 0.90217 1.19484 0.95161 0.76953 0.97018 1.45484 1.03075 1.11664 1.75904 1.15839 0.84152 0.80756 0.78707 1.90867 1.55265 1.42074 1.57218 1.45203 1.04807 1.06160 1.73510 1.22175 0.93955 0.83077 1.03437 1.21054 0.89820 0.97026 1.03825 1.20071 0.95328 0.92686 1.07057 1.20200 0.89705 0.99654 0.98752 1.20806 0.99387 0.91128 1.05291 1.20508 0.87689 0.91210 1.03775 1.98364 1.39926 1.69011 1.96869 1.20792 0.88501 1.02092 1.03991 1.17950 0.83952 0.92566 0.95814 0.92146 0.95437 0.96066 0.77060 0.89632 0.89710 0.88965 0.88985 0.84954 0.84850 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.55 -14.70 9.83 -34.44 -0.34 -15.04 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C 0.24 5.75 4.50 -5.19 -0.02 5.72 16 10 N -0.71 -14.44 5.50 -66.41 -0.37 -14.81 16 11 C 0.70 14.10 8.42 -86.92 -0.73 13.36 16 12 O -0.58 -13.47 14.54 5.28 0.08 -13.39 16 13 N -0.57 -9.03 3.13 -118.26 -0.37 -9.40 16 14 C 0.10 1.05 6.34 -3.64 -0.02 1.03 16 15 C -0.08 -0.68 6.94 -27.24 -0.19 -0.87 16 16 C -0.15 -1.68 6.23 -104.26 -0.65 -2.33 16 17 C -0.06 -0.62 10.03 -39.61 -0.40 -1.02 16 18 C -0.15 -1.54 9.84 -39.53 -0.39 -1.93 16 19 C 0.00 -0.06 6.31 -39.62 -0.25 -0.31 16 20 Cl -0.07 -0.87 28.95 -51.86 -1.50 -2.37 16 21 C -0.13 -2.07 9.23 -39.18 -0.36 -2.43 16 22 C 0.20 2.94 6.62 -83.57 -0.55 2.39 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 25 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 26 H 0.40 6.99 7.26 -40.82 -0.30 6.70 16 27 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 28 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.15 2.78 6.29 -52.49 -0.33 2.45 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -31.96 297.18 -9.09 -41.05 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.51 Total: 2.47 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -4.00 Total: 0.71 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.04 Total: -49.46 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.96 -9.09 -41.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.191 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds