Wall clock time and date at job start Tue Mar 31 2020 01:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99624 * 2 1 4 4 H 1.48495 * 109.47582 * 270.00060 * 3 2 1 5 5 H 1.48502 * 109.47340 * 30.00766 * 3 2 1 6 6 H 1.48512 * 109.46772 * 150.00328 * 3 2 1 7 7 C 1.37873 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00410 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00006 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00103 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99587 * 5.02401 * 11 10 9 13 13 N 1.34775 * 120.00313 * 185.01758 * 11 10 9 14 14 C 1.46533 * 124.97881 * 354.92292 * 13 11 10 15 15 C 1.53738 * 105.20154 * 180.02562 * 14 13 11 16 16 C 1.51223 * 104.58534 * 359.97438 * 15 14 13 17 17 C 1.38194 * 130.95163 * 180.02562 * 16 15 14 18 18 C 1.38207 * 120.16836 * 179.72663 * 17 16 15 19 19 C 1.38419 * 119.80672 * 0.55230 * 18 17 16 20 20 Cl 1.73599 * 119.89758 * 179.72617 * 19 18 17 21 21 C 1.37957 * 120.19589 * 359.44419 * 19 18 17 22 22 C 1.38566 * 108.55856 * 0.02562 * 16 15 14 23 23 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46859 * 59.99940 * 9 7 2 25 25 H 1.08992 * 109.47218 * 299.99783 * 9 7 2 26 26 H 0.97001 * 120.00058 * 0.02562 * 10 9 7 27 27 H 1.09000 * 110.30256 * 61.08490 * 14 13 11 28 28 H 1.09008 * 110.29756 * 298.94567 * 14 13 11 29 29 H 1.09007 * 110.41023 * 241.22209 * 15 14 13 30 30 H 1.08994 * 110.41815 * 118.77216 * 15 14 13 31 31 H 1.08004 * 119.91753 * 0.02562 * 17 16 15 32 32 H 1.07995 * 120.09674 * 180.30181 * 18 17 16 33 33 H 1.07999 * 119.85789 * 180.29693 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3250 -2.8214 -0.0020 12 8 6.1144 -1.9011 0.0893 13 7 5.7751 -4.0877 -0.1040 14 6 4.9268 -5.2825 -0.1129 15 6 5.8990 -6.4661 -0.2454 16 6 7.2692 -5.8288 -0.3038 17 6 8.5257 -6.3918 -0.4217 18 6 9.6474 -5.5852 -0.4593 19 6 9.5101 -4.2110 -0.3670 20 17 10.9180 -3.1961 -0.4069 21 6 8.2574 -3.6451 -0.2493 22 6 7.1201 -4.4539 -0.2165 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6803 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.3696 -3.3125 -0.0010 27 1 4.2452 -5.2561 -0.9630 28 1 4.3670 -5.3558 0.8195 29 1 5.6991 -7.0216 -1.1617 30 1 5.8209 -7.1213 0.6222 31 1 8.6311 -7.4645 -0.4895 32 1 10.6285 -6.0262 -0.5564 33 1 8.1563 -2.5720 -0.1825 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336363932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:14 Heat of formation + Delta-G solvation = -24.471943 kcal Electronic energy + Delta-G solvation = -18923.117558 eV Core-core repulsion = 15780.743619 eV Total energy + Delta-G solvation = -3142.373939 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28374 -40.14260 -38.06716 -36.82752 -36.34995 -34.49092 -33.30592 -31.33590 -29.86518 -29.52744 -25.18055 -24.25969 -23.57498 -22.38517 -21.46301 -19.80662 -18.50680 -17.85183 -17.47216 -17.08093 -16.60438 -16.41288 -15.84615 -15.73586 -15.06570 -14.79111 -14.47910 -14.37735 -14.33124 -14.08966 -13.54169 -13.09588 -12.97716 -12.77633 -12.68449 -12.58319 -12.32630 -11.99259 -11.96043 -11.70091 -11.32474 -11.10842 -10.95274 -10.16962 -9.72239 -8.81072 -8.42846 -6.50208 0.10111 0.25634 1.03987 1.30836 1.33009 1.44589 1.46688 1.91614 2.25805 2.65790 2.91025 2.92954 3.49361 3.57826 4.01660 4.11909 4.17075 4.21308 4.34264 4.56241 4.67009 4.76438 4.96172 4.96526 5.02317 5.08616 5.17648 5.27286 5.30390 5.34275 5.40537 5.83103 5.92364 6.11052 6.50319 6.85169 7.13009 7.36531 8.71611 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.004233 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.634014 B = 6612.656691 C = 7758.197810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.032 3.968 3 Si 0.933 3.067 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.708 5.708 11 C 0.701 3.299 12 O -0.620 6.620 13 N -0.572 5.572 14 C 0.082 3.918 15 C -0.069 4.069 16 C -0.133 4.133 17 C -0.052 4.052 18 C -0.132 4.132 19 C -0.018 4.018 20 Cl -0.073 7.073 21 C -0.161 4.161 22 C 0.152 3.848 23 H 0.274 0.726 24 H 0.013 0.987 25 H 0.012 0.988 26 H 0.408 0.592 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.180 0.820 32 H 0.164 0.836 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.916 -18.285 -1.271 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.169 4.169 3 Si 0.757 3.243 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.126 3.874 10 N -0.361 5.361 11 C 0.403 3.597 12 O -0.501 6.501 13 N -0.297 5.297 14 C -0.038 4.038 15 C -0.106 4.106 16 C -0.136 4.136 17 C -0.070 4.070 18 C -0.152 4.152 19 C -0.045 4.045 20 Cl -0.044 7.044 21 C -0.183 4.183 22 C 0.055 3.945 23 H 0.083 0.917 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.244 0.756 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.198 0.802 32 H 0.182 0.818 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.228 -17.262 -1.203 24.418 hybrid contribution -0.299 1.462 0.064 1.493 sum 16.929 -15.800 -1.139 23.185 Atomic orbital electron populations 1.69955 1.07545 1.28703 1.50359 1.25498 0.95494 1.02393 0.93480 0.85922 0.79254 0.79611 0.79509 1.18934 1.19592 1.18761 1.21199 0.89439 0.94786 1.53031 0.91890 1.19052 0.93475 0.79082 0.95779 1.45137 1.03818 1.10528 1.76638 1.15938 0.83376 0.82053 0.78341 1.90836 1.56093 1.44220 1.58961 1.45127 1.06173 1.05636 1.72766 1.22604 0.94493 0.82200 1.04539 1.21188 0.86800 0.95997 1.06606 1.20512 0.97461 0.90922 1.04729 1.20737 0.88228 1.01777 0.96294 1.21257 1.01394 0.89735 1.02815 1.20655 0.86720 0.92477 1.04657 1.98357 1.39639 1.69500 1.96921 1.20653 0.90481 1.00557 1.06580 1.18313 0.83176 0.94423 0.98555 0.91703 0.96946 0.97043 0.75592 0.88676 0.88656 0.86039 0.86014 0.80239 0.81840 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.76 13.96 21.45 0.30 -54.46 16 2 C 0.03 1.82 5.47 84.65 0.46 2.28 16 3 Si 0.93 44.14 27.47 68.60 1.88 46.03 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -12.52 6.54 99.48 0.65 -11.87 16 7 C -0.55 -30.01 9.83 25.60 0.25 -29.76 16 8 H 0.06 3.59 7.84 -2.91 -0.02 3.57 16 9 C 0.25 12.48 4.50 85.64 0.39 12.87 16 10 N -0.71 -29.47 5.50 -482.28 -2.65 -32.13 16 11 C 0.70 29.01 8.42 179.06 1.51 30.51 16 12 O -0.62 -30.64 14.54 -4.01 -0.06 -30.70 16 13 N -0.57 -17.99 3.13 -646.31 -2.02 -20.01 16 14 C 0.08 1.62 6.34 86.62 0.55 2.16 16 15 C -0.07 -0.87 6.94 30.26 0.21 -0.66 16 16 C -0.13 -2.56 6.23 -19.63 -0.12 -2.68 16 17 C -0.05 -0.75 10.03 22.25 0.22 -0.53 16 18 C -0.13 -2.33 9.84 22.31 0.22 -2.11 16 19 C -0.02 -0.46 6.31 22.25 0.14 -0.32 16 20 Cl -0.07 -1.80 28.95 -2.72 -0.08 -1.88 16 21 C -0.16 -5.22 9.23 22.53 0.21 -5.01 16 22 C 0.15 4.50 6.62 38.27 0.25 4.76 16 23 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 24 H 0.01 0.67 7.20 -2.38 -0.02 0.65 16 25 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 26 H 0.41 14.56 7.26 -92.71 -0.67 13.89 16 27 H 0.10 1.67 8.12 -2.39 -0.02 1.65 16 28 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 32 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.11 4.51 6.29 -2.91 -0.02 4.50 16 Total: -1.00 -73.14 297.18 2.08 -71.06 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.42 Total: 10.58 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 4.29 Total: 11.51 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -4.38 Total: -106.59 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.06 Total: -30.70 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -73.14 2.08 -71.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336363932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.589 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds