Wall clock time and date at job start Tue Mar 31 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47196 * 208.13896 * 3 2 1 5 5 C 1.36872 * 120.00088 * 264.66620 * 4 3 2 6 6 H 1.08000 * 120.00063 * 130.80888 * 5 4 3 7 7 C 1.39052 * 119.99624 * 310.80079 * 5 4 3 8 8 N 1.31356 * 119.99633 * 170.06674 * 7 5 4 9 9 Si 1.86799 * 120.00296 * 350.07083 * 7 5 4 10 10 H 1.48502 * 109.47063 * 95.24881 * 9 7 5 11 11 H 1.48500 * 109.47209 * 215.25265 * 9 7 5 12 12 H 1.48502 * 109.46850 * 335.25248 * 9 7 5 13 13 C 1.34774 * 119.99736 * 84.65982 * 4 3 2 14 14 O 1.21592 * 120.00142 * 2.09612 * 13 4 3 15 15 C 1.47733 * 119.99758 * 182.09334 * 13 4 3 16 16 C 1.39649 * 120.14592 * 137.92412 * 15 13 4 17 17 C 1.37936 * 119.84215 * 180.29737 * 16 15 13 18 18 C 1.38382 * 120.15254 * 359.42612 * 17 16 15 19 19 C 1.50692 * 119.84794 * 180.32320 * 18 17 16 20 20 F 1.39903 * 109.47397 * 30.27207 * 19 18 17 21 21 F 1.39897 * 109.47172 * 150.27876 * 19 18 17 22 22 C 1.38372 * 120.30036 * 0.59854 * 18 17 16 23 23 C 1.37941 * 120.15618 * 359.68116 * 22 18 17 24 24 H 1.09003 * 109.47182 * 88.14374 * 3 2 1 25 25 H 1.08993 * 109.47217 * 328.13875 * 3 2 1 26 26 H 0.97008 * 120.00029 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.07859 * 0.02576 * 16 15 13 28 28 H 1.07996 * 119.92225 * 179.69774 * 17 16 15 29 29 H 1.09005 * 109.47059 * 270.27747 * 19 18 17 30 30 H 1.08005 * 119.92528 * 179.69955 * 22 18 17 31 31 H 1.07992 * 120.07878 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0959 1.2189 0.6514 5 6 3.4274 2.3122 -0.1023 6 1 3.0431 3.2865 0.1613 7 6 4.2592 2.1685 -1.2073 8 7 4.4217 3.1700 -2.0416 9 14 5.1453 0.5513 -1.5054 10 1 4.3524 -0.2817 -2.4450 11 1 6.4832 0.8205 -2.0908 12 1 5.3045 -0.1706 -0.2175 13 6 3.2180 1.2630 1.9929 14 8 2.9598 0.2794 2.6596 15 6 3.6658 2.5063 2.6533 16 6 3.0463 2.9389 3.8277 17 6 3.4653 4.1040 4.4357 18 6 4.5048 4.8373 3.8911 19 6 4.9618 6.1052 4.5651 20 9 4.7504 6.0026 5.9443 21 9 6.3243 6.3011 4.3154 22 6 5.1227 4.4146 2.7275 23 6 4.7100 3.2544 2.1058 24 1 2.9714 -0.0325 -1.0272 25 1 2.9718 -0.8719 0.5424 26 1 5.0023 3.0699 -2.8123 27 1 2.2381 2.3649 4.2564 28 1 2.9838 4.4423 5.3413 29 1 4.3954 6.9498 4.1727 30 1 5.9303 4.9942 2.3050 31 1 5.1934 2.9254 1.1978 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338668821.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:50 Heat of formation + Delta-G solvation = -69.643428 kcal Electronic energy + Delta-G solvation = -21128.190709 eV Core-core repulsion = 17432.061307 eV Total energy + Delta-G solvation = -3696.129401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.95588 -46.97335 -39.83064 -38.10199 -36.11043 -35.00995 -32.28671 -31.90875 -30.68613 -28.29370 -26.21855 -24.99788 -22.32454 -21.98911 -19.64886 -18.70125 -17.59384 -17.43777 -17.11546 -17.03815 -16.03249 -15.67627 -14.83789 -14.57023 -14.21783 -14.00392 -13.81524 -13.67674 -13.45502 -13.12505 -12.99018 -12.86541 -12.66755 -12.46883 -12.36688 -11.98828 -11.81530 -11.52682 -11.17874 -10.87562 -10.76661 -10.57821 -10.27070 -9.60916 -9.07195 -8.65887 -8.54860 -8.19895 -6.71346 -4.52195 1.17779 1.73485 2.83119 2.97746 3.01700 3.05893 3.30066 3.33141 3.79202 3.85676 4.04355 4.19982 4.31098 4.50092 4.67049 4.79689 4.96663 5.24174 5.30821 5.43506 5.62834 5.74583 5.81291 5.88760 6.09866 6.34827 6.55984 6.69350 6.88953 6.97055 7.20681 7.70496 7.98529 8.04093 8.58509 8.89337 9.21654 10.36248 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.005808 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.263768 B = 4819.747579 C = 5734.049440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.215 3.785 3 C 0.188 3.812 4 N -0.457 5.457 5 C -0.355 4.355 6 H 0.109 0.891 7 C 0.072 3.928 8 N -0.850 5.850 9 Si 0.861 3.139 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.251 1.251 13 C 0.535 3.465 14 O -0.574 6.574 15 C -0.078 4.078 16 C -0.082 4.082 17 C -0.106 4.106 18 C -0.164 4.164 19 C 0.314 3.686 20 F -0.203 7.203 21 F -0.201 7.201 22 C -0.103 4.103 23 C -0.048 4.048 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.281 0.719 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 3.511 6.675 8.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.104 4.104 3 C 0.062 3.938 4 N -0.179 5.179 5 C -0.482 4.482 6 H 0.126 0.874 7 C -0.138 4.138 8 N -0.483 5.483 9 Si 0.686 3.314 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.175 1.175 13 C 0.325 3.675 14 O -0.457 6.457 15 C -0.081 4.081 16 C -0.101 4.101 17 C -0.124 4.124 18 C -0.165 4.165 19 C 0.261 3.739 20 F -0.185 7.185 21 F -0.182 7.182 22 C -0.122 4.122 23 C -0.066 4.066 24 H 0.128 0.872 25 H 0.133 0.867 26 H 0.091 0.909 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.228 3.104 6.821 7.818 hybrid contribution 0.929 -0.551 -0.481 1.183 sum 3.156 2.553 6.340 7.528 Atomic orbital electron populations 1.81032 1.13256 1.08819 1.09590 1.29884 0.95696 0.92564 0.92263 1.19357 0.80974 0.92629 1.00834 1.43469 1.57098 1.12674 1.04660 1.19101 1.30232 0.87958 1.10884 0.87400 1.25498 0.95346 0.97577 0.95330 1.69626 1.34982 1.31686 1.11974 0.87071 0.80391 0.83706 0.80193 1.19207 1.20333 1.17483 1.18480 0.79019 0.87539 0.82418 1.90699 1.53885 1.36409 1.64697 1.19914 0.97443 0.95571 0.95139 1.21103 0.99403 0.95492 0.94093 1.20656 0.96747 0.95052 0.99940 1.20443 1.00194 0.97378 0.98502 1.20327 0.78715 0.98108 0.76784 1.92974 1.94657 1.97500 1.33335 1.92983 1.35061 1.96286 1.93894 1.20891 0.99698 0.97378 0.94195 1.21761 0.94605 0.92153 0.98091 0.87237 0.86734 0.90877 0.85314 0.85406 0.86267 0.85121 0.82656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.62 18.54 42.16 0.78 -8.84 16 2 C 0.21 4.34 15.71 -20.76 -0.33 4.02 16 3 C 0.19 3.58 4.28 -6.83 -0.03 3.55 16 4 N -0.46 -9.68 1.99 -119.05 -0.24 -9.91 16 5 C -0.35 -7.96 6.61 -15.00 -0.10 -8.06 16 6 H 0.11 2.66 7.47 -52.49 -0.39 2.26 16 7 C 0.07 1.63 5.17 -17.45 -0.09 1.54 16 8 N -0.85 -20.51 13.95 55.50 0.77 -19.74 16 9 Si 0.86 16.82 24.87 -169.99 -4.23 12.59 16 10 H -0.27 -4.95 6.91 56.52 0.39 -4.56 16 11 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 12 H -0.25 -4.81 7.01 56.52 0.40 -4.41 16 13 C 0.54 11.38 7.23 -12.38 -0.09 11.29 16 14 O -0.57 -13.12 16.61 5.28 0.09 -13.03 16 15 C -0.08 -1.48 5.29 -104.97 -0.55 -2.04 16 16 C -0.08 -1.37 9.66 -39.17 -0.38 -1.75 16 17 C -0.11 -1.53 9.38 -39.64 -0.37 -1.90 16 18 C -0.16 -2.33 5.74 -104.52 -0.60 -2.93 16 19 C 0.31 3.71 5.65 36.00 0.20 3.91 16 20 F -0.20 -2.58 16.48 2.25 0.04 -2.54 16 21 F -0.20 -2.64 16.47 2.25 0.04 -2.60 16 22 C -0.10 -1.60 9.38 -39.64 -0.37 -1.97 16 23 C -0.05 -0.86 8.10 -39.17 -0.32 -1.17 16 24 H 0.11 1.99 4.27 -51.93 -0.22 1.77 16 25 H 0.11 1.97 7.56 -51.93 -0.39 1.58 16 26 H 0.28 6.34 8.31 -40.82 -0.34 6.00 16 27 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 28 H 0.13 1.54 7.60 -52.49 -0.40 1.14 16 29 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.13 1.81 7.59 -52.48 -0.40 1.41 16 31 H 0.16 2.96 6.26 -52.49 -0.33 2.63 16 LS Contribution 287.37 15.07 4.33 4.33 Total: -1.00 -26.74 287.37 -3.57 -30.31 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -2.13 Total: 4.97 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -3.03 Total: 4.47 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 1.32 Total: -38.49 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.07 Total: -5.15 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -4.23 Total: 12.59 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.74 -3.57 -30.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338668821.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.331 kcal (2) G-P(sol) polarization free energy of solvation -26.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds