Wall clock time and date at job start Tue Mar 31 2020 01:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47196 * 208.13896 * 3 2 1 5 5 C 1.36872 * 120.00088 * 264.66620 * 4 3 2 6 6 H 1.08000 * 120.00063 * 130.80888 * 5 4 3 7 7 C 1.39052 * 119.99624 * 310.80079 * 5 4 3 8 8 N 1.31356 * 119.99633 * 170.06674 * 7 5 4 9 9 Si 1.86799 * 120.00296 * 350.07083 * 7 5 4 10 10 H 1.48502 * 109.47063 * 95.24881 * 9 7 5 11 11 H 1.48500 * 109.47209 * 215.25265 * 9 7 5 12 12 H 1.48502 * 109.46850 * 335.25248 * 9 7 5 13 13 C 1.34774 * 119.99736 * 84.65982 * 4 3 2 14 14 O 1.21592 * 120.00142 * 2.09612 * 13 4 3 15 15 C 1.47733 * 119.99758 * 182.09334 * 13 4 3 16 16 C 1.39649 * 120.14592 * 137.92412 * 15 13 4 17 17 C 1.37936 * 119.84215 * 180.29737 * 16 15 13 18 18 C 1.38382 * 120.15254 * 359.42612 * 17 16 15 19 19 C 1.50692 * 119.84794 * 180.32320 * 18 17 16 20 20 F 1.39903 * 109.47397 * 30.27207 * 19 18 17 21 21 F 1.39897 * 109.47172 * 150.27876 * 19 18 17 22 22 C 1.38372 * 120.30036 * 0.59854 * 18 17 16 23 23 C 1.37941 * 120.15618 * 359.68116 * 22 18 17 24 24 H 1.09003 * 109.47182 * 88.14374 * 3 2 1 25 25 H 1.08993 * 109.47217 * 328.13875 * 3 2 1 26 26 H 0.97008 * 120.00029 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.07859 * 0.02576 * 16 15 13 28 28 H 1.07996 * 119.92225 * 179.69774 * 17 16 15 29 29 H 1.09005 * 109.47059 * 270.27747 * 19 18 17 30 30 H 1.08005 * 119.92528 * 179.69955 * 22 18 17 31 31 H 1.07992 * 120.07878 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0959 1.2189 0.6514 5 6 3.4274 2.3122 -0.1023 6 1 3.0431 3.2865 0.1613 7 6 4.2592 2.1685 -1.2073 8 7 4.4217 3.1700 -2.0416 9 14 5.1453 0.5513 -1.5054 10 1 4.3524 -0.2817 -2.4450 11 1 6.4832 0.8205 -2.0908 12 1 5.3045 -0.1706 -0.2175 13 6 3.2180 1.2630 1.9929 14 8 2.9598 0.2794 2.6596 15 6 3.6658 2.5063 2.6533 16 6 3.0463 2.9389 3.8277 17 6 3.4653 4.1040 4.4357 18 6 4.5048 4.8373 3.8911 19 6 4.9618 6.1052 4.5651 20 9 4.7504 6.0026 5.9443 21 9 6.3243 6.3011 4.3154 22 6 5.1227 4.4146 2.7275 23 6 4.7100 3.2544 2.1058 24 1 2.9714 -0.0325 -1.0272 25 1 2.9718 -0.8719 0.5424 26 1 5.0023 3.0699 -2.8123 27 1 2.2381 2.3649 4.2564 28 1 2.9838 4.4423 5.3413 29 1 4.3954 6.9498 4.1727 30 1 5.9303 4.9942 2.3050 31 1 5.1934 2.9254 1.1978 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338668821.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:49 Heat of formation + Delta-G solvation = -83.836937 kcal Electronic energy + Delta-G solvation = -21128.806186 eV Core-core repulsion = 17432.061307 eV Total energy + Delta-G solvation = -3696.744878 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.92601 -47.94830 -41.37259 -39.48903 -37.77503 -36.70837 -34.03207 -33.20335 -31.96338 -29.80464 -27.58106 -26.54871 -23.60355 -23.28600 -21.19542 -20.36687 -19.02464 -18.39423 -18.25776 -18.14573 -17.59760 -17.32004 -16.36615 -16.03247 -15.50480 -15.48697 -15.32456 -14.77769 -14.65969 -14.47363 -14.46152 -14.16526 -14.03918 -13.96701 -13.78651 -13.50586 -13.18037 -13.09661 -12.83264 -12.20081 -12.03300 -11.94101 -11.85902 -11.27765 -10.73137 -10.00850 -9.89677 -9.82747 -8.45919 -6.30862 -0.13665 0.45906 1.27617 1.35616 1.42192 1.51112 1.68854 1.78285 2.22035 2.56863 2.71835 2.80920 2.90664 3.16178 3.31101 3.62237 3.91239 4.02915 4.10105 4.10453 4.14834 4.33339 4.45367 4.63752 4.81568 5.10036 5.27765 5.29937 5.40231 5.55259 5.90111 5.99990 6.15568 6.41451 6.86472 7.15882 7.51390 8.64655 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.005808 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.263768 B = 4819.747579 C = 5734.049440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.226 3.774 3 C 0.185 3.815 4 N -0.464 5.464 5 C -0.346 4.346 6 H 0.078 0.922 7 C 0.042 3.958 8 N -0.889 5.889 9 Si 0.906 3.094 10 H -0.245 1.245 11 H -0.281 1.281 12 H -0.245 1.245 13 C 0.532 3.468 14 O -0.594 6.594 15 C -0.109 4.109 16 C -0.088 4.088 17 C -0.097 4.097 18 C -0.157 4.157 19 C 0.318 3.682 20 F -0.206 7.206 21 F -0.208 7.208 22 C -0.104 4.104 23 C -0.059 4.059 24 H 0.122 0.878 25 H 0.138 0.862 26 H 0.284 0.716 27 H 0.131 0.869 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.146 0.854 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 3.810 7.566 9.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.092 4.092 3 C 0.059 3.941 4 N -0.186 5.186 5 C -0.473 4.473 6 H 0.096 0.904 7 C -0.165 4.165 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.170 1.170 11 H -0.207 1.207 12 H -0.168 1.168 13 C 0.324 3.676 14 O -0.479 6.479 15 C -0.112 4.112 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.158 4.158 19 C 0.264 3.736 20 F -0.187 7.187 21 F -0.189 7.189 22 C -0.122 4.122 23 C -0.078 4.078 24 H 0.140 0.860 25 H 0.155 0.845 26 H 0.094 0.906 27 H 0.149 0.851 28 H 0.176 0.824 29 H 0.179 0.821 30 H 0.164 0.836 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.712 3.401 7.715 8.857 hybrid contribution 0.769 -0.559 -0.665 1.160 sum 3.481 2.841 7.050 8.360 Atomic orbital electron populations 1.81034 1.13999 1.09602 1.10490 1.30082 0.95860 0.91820 0.91485 1.19601 0.80222 0.92507 1.01742 1.43511 1.57338 1.12962 1.04740 1.18745 1.30287 0.87439 1.10839 0.90437 1.25971 0.95500 1.00206 0.94814 1.69704 1.36141 1.33651 1.12841 0.86360 0.79409 0.80708 0.80693 1.16984 1.20669 1.16813 1.18894 0.78258 0.88094 0.82396 1.90667 1.54862 1.37320 1.65009 1.19929 0.98996 0.95677 0.96562 1.21239 0.99496 0.96509 0.93496 1.20951 0.96380 0.93800 1.00364 1.20773 0.99239 0.98069 0.97712 1.20591 0.78658 0.97908 0.76399 1.92974 1.94631 1.97504 1.33628 1.92975 1.35827 1.96217 1.93918 1.21044 1.00041 0.96503 0.94650 1.21604 0.94895 0.93327 0.97976 0.86032 0.84482 0.90611 0.85068 0.82444 0.82060 0.83625 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.06 18.54 20.01 0.37 -19.69 16 2 C 0.23 8.98 15.71 89.44 1.41 10.38 16 3 C 0.18 6.82 4.28 84.57 0.36 7.18 16 4 N -0.46 -19.60 1.99 -648.83 -1.29 -20.89 16 5 C -0.35 -15.77 6.61 84.10 0.56 -15.21 16 6 H 0.08 3.97 7.47 -2.91 -0.02 3.95 16 7 C 0.04 1.88 5.17 84.96 0.44 2.32 16 8 N -0.89 -43.43 13.95 21.68 0.30 -43.13 16 9 Si 0.91 33.63 24.87 68.60 1.71 35.34 16 10 H -0.25 -8.28 6.91 99.48 0.69 -7.60 16 11 H -0.28 -10.57 7.11 99.48 0.71 -9.87 16 12 H -0.24 -8.80 7.01 99.48 0.70 -8.10 16 13 C 0.53 22.74 7.23 86.75 0.63 23.36 16 14 O -0.59 -27.07 16.61 -4.00 -0.07 -27.14 16 15 C -0.11 -4.17 5.29 -20.09 -0.11 -4.28 16 16 C -0.09 -2.90 9.66 22.54 0.22 -2.68 16 17 C -0.10 -2.58 9.38 22.23 0.21 -2.37 16 18 C -0.16 -4.09 5.74 -19.80 -0.11 -4.20 16 19 C 0.32 6.40 5.65 71.23 0.40 6.80 16 20 F -0.21 -4.52 16.48 44.97 0.74 -3.78 16 21 F -0.21 -4.88 16.47 44.97 0.74 -4.14 16 22 C -0.10 -3.12 9.38 22.23 0.21 -2.91 16 23 C -0.06 -2.15 8.10 22.54 0.18 -1.97 16 24 H 0.12 4.19 4.27 -2.39 -0.01 4.18 16 25 H 0.14 4.46 7.56 -2.39 -0.02 4.45 16 26 H 0.28 12.93 8.31 -92.70 -0.77 12.16 16 27 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 28 H 0.16 3.24 7.60 -2.91 -0.02 3.22 16 29 H 0.16 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.15 3.84 7.59 -2.91 -0.02 3.82 16 31 H 0.14 5.39 6.26 -2.91 -0.02 5.37 16 Total: -1.00 -57.33 287.37 8.06 -49.27 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 1.17 Total: 17.73 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 4.39 Total: 16.42 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -0.62 Total: -83.71 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.07 Total: -27.14 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 1.48 Total: -7.91 kcal Atomic # 14 Polarization: 33.63 SS G_CDS: 1.71 Total: 35.34 kcal Total: -57.33 8.06 -49.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338668821.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.566 kcal (2) G-P(sol) polarization free energy of solvation -57.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds