Wall clock time and date at job start Tue Mar 31 2020 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99861 * 2 1 4 4 H 1.48504 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46946 * 299.99535 * 3 2 1 6 6 H 1.48497 * 109.47507 * 59.99707 * 3 2 1 7 7 C 1.37869 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47457 * 179.97438 * 10 9 7 12 12 N 1.30975 * 126.42869 * 90.00655 * 11 10 9 13 13 C 1.35251 * 105.57535 * 179.97438 * 12 11 10 14 14 C 1.48322 * 126.41622 * 180.02562 * 13 12 11 15 15 C 1.39374 * 120.10926 * 179.97438 * 14 13 12 16 16 C 1.37916 * 119.93243 * 179.97438 * 15 14 13 17 17 C 1.38633 * 120.15106 * 359.97438 * 16 15 14 18 18 F 1.35094 * 119.88882 * 180.02562 * 17 16 15 19 19 C 1.38470 * 120.21946 * 0.04527 * 17 16 15 20 20 C 1.38252 * 120.07033 * 359.69987 * 19 17 16 21 21 F 1.35099 * 120.07484 * 180.27601 * 20 19 17 22 22 N 1.30806 * 107.16202 * 359.97438 * 13 12 11 23 23 O 1.21293 * 110.08817 * 359.97438 * 22 13 12 24 24 H 0.97003 * 119.99582 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46770 * 60.00286 * 9 7 2 26 26 H 1.08994 * 109.47678 * 300.00504 * 9 7 2 27 27 H 1.09006 * 109.46599 * 60.00546 * 10 9 7 28 28 H 1.08994 * 109.47386 * 300.01048 * 10 9 7 29 29 H 1.08001 * 120.03704 * 359.95281 * 15 14 13 30 30 H 1.07995 * 119.92617 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.96700 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4916 -4.9671 0.0033 12 7 1.1017 -5.6415 -1.0496 13 6 0.4707 -6.7360 -0.5667 14 6 -0.1533 -7.8176 -1.3671 15 6 -0.7718 -8.8915 -0.7294 16 6 -1.3513 -9.8949 -1.4773 17 6 -1.3207 -9.8376 -2.8621 18 9 -1.8905 -10.8231 -3.5895 19 6 -0.7075 -8.7737 -3.5022 20 6 -0.1283 -7.7602 -2.7614 21 9 0.4650 -6.7194 -3.3858 22 7 0.5149 -6.6625 0.7386 23 8 1.0975 -5.6548 1.0796 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5574 -0.8881 26 1 0.6246 -2.5563 0.8918 27 1 2.8724 -3.6040 0.8910 28 1 2.8712 -3.6047 -0.8889 29 1 -0.7969 -8.9381 0.3493 30 1 -1.8309 -10.7268 -0.9831 31 1 -0.6857 -8.7334 -4.5812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340739817.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:38 Heat of formation + Delta-G solvation = -6.321427 kcal Electronic energy + Delta-G solvation = -20303.143208 eV Core-core repulsion = 16609.759654 eV Total energy + Delta-G solvation = -3693.383553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.37356 -49.01165 -45.20990 -39.14069 -35.67943 -34.55819 -32.75373 -31.39003 -30.78413 -29.89552 -25.92255 -24.69673 -23.80237 -22.68410 -21.92036 -20.58256 -18.50304 -17.83001 -17.64653 -17.13189 -16.39326 -16.24509 -16.22161 -15.69652 -15.45463 -14.66279 -14.56418 -14.32977 -14.11537 -13.57402 -13.03714 -12.69114 -12.48934 -12.43719 -12.19542 -11.77613 -11.67314 -11.37647 -11.03180 -10.82504 -10.69589 -10.23963 -10.16979 -9.54509 -9.38723 -9.29238 -8.72016 -8.47254 -6.11270 -4.16089 0.24534 0.66659 1.55499 2.44466 3.18505 3.21409 3.27129 3.35010 3.38229 3.43518 3.58111 3.94923 4.08028 4.33201 4.38707 4.53827 4.84797 5.04444 5.25618 5.40495 5.46243 5.55882 5.65767 5.72845 5.89629 6.01354 6.18002 6.24808 6.39044 6.57823 7.46300 7.53241 7.84177 8.19118 8.39586 8.89353 9.49116 11.00012 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.033949 B = 0.003339 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.559194 B = 8384.001432 C = 8790.902260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.029 4.029 11 C 0.222 3.778 12 N -0.479 5.479 13 C 0.197 3.803 14 C -0.057 4.057 15 C -0.028 4.028 16 C -0.168 4.168 17 C 0.144 3.856 18 F -0.129 7.129 19 C -0.198 4.198 20 C 0.176 3.824 21 F -0.102 7.102 22 N -0.384 5.384 23 O 0.077 5.923 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.024 0.976 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 -19.210 -3.321 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.068 4.068 11 C 0.003 3.997 12 N -0.212 5.212 13 C -0.073 4.073 14 C -0.060 4.060 15 C -0.048 4.048 16 C -0.187 4.187 17 C 0.123 3.877 18 F -0.107 7.107 19 C -0.218 4.218 20 C 0.154 3.846 21 F -0.079 7.079 22 N -0.093 5.093 23 O 0.017 5.983 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.169 0.831 30 H 0.167 0.833 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.663 -19.752 -3.272 20.090 hybrid contribution 0.354 1.103 -0.246 1.184 sum -1.310 -18.649 -3.518 19.023 Atomic orbital electron populations 1.69980 1.06166 1.26890 1.49888 1.25015 0.94875 0.99482 0.94896 0.86447 0.80054 0.83325 0.77655 1.19541 1.20929 1.20936 1.21092 0.93209 0.90145 1.51910 0.91934 1.19176 0.93581 0.89814 0.98555 1.20821 0.98006 0.83403 1.04612 1.29674 0.93890 0.96960 0.79193 1.72196 1.16033 1.04417 1.28558 1.23466 1.00548 0.95263 0.87987 1.17465 1.03862 0.94465 0.90223 1.20928 0.92485 0.90228 1.01185 1.21087 1.04309 1.01619 0.91647 1.17415 0.95000 0.86027 0.89213 1.91544 1.82059 1.59515 1.77570 1.20988 1.04076 0.94525 1.02163 1.17221 0.93454 0.85193 0.88758 1.91671 1.80065 1.54357 1.81850 1.74791 1.15826 1.04254 1.14386 1.85259 1.52044 1.24686 1.36270 0.92785 0.95451 0.95742 0.88862 0.87975 0.83069 0.83273 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.53 -13.89 9.11 -34.45 -0.31 -14.21 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.66 4.95 -27.88 -0.14 0.52 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.22 4.16 7.75 -12.98 -0.10 4.06 16 12 N -0.48 -9.26 10.25 -9.88 -0.10 -9.36 16 13 C 0.20 3.43 7.78 -156.10 -1.22 2.22 16 14 C -0.06 -0.81 5.88 -104.83 -0.62 -1.42 16 15 C -0.03 -0.30 9.69 -39.28 -0.38 -0.68 16 16 C -0.17 -1.46 10.01 -39.55 -0.40 -1.85 16 17 C 0.14 1.37 7.30 -39.35 -0.29 1.09 16 18 F -0.13 -1.22 17.26 2.25 0.04 -1.18 16 19 C -0.20 -2.06 9.99 -39.49 -0.39 -2.45 16 20 C 0.18 2.35 7.28 -39.08 -0.28 2.07 16 21 F -0.10 -1.61 15.80 2.25 0.04 -1.57 16 22 N -0.38 -6.71 11.86 30.98 0.37 -6.34 16 23 O 0.08 1.40 11.29 18.05 0.20 1.60 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 28 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 29 H 0.15 1.46 7.87 -52.49 -0.41 1.04 16 30 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 294.19 15.07 4.43 4.43 Total: -1.00 -30.06 294.19 -6.18 -36.24 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: -2.49 Total: -4.48 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -4.39 Total: -9.85 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 1.00 Total: -40.95 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.20 Total: 1.60 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.07 Total: -2.75 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.06 -6.18 -36.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340739817.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.921 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds