Wall clock time and date at job start Tue Mar 31 2020 01:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99861 * 2 1 4 4 H 1.48504 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46946 * 299.99535 * 3 2 1 6 6 H 1.48497 * 109.47507 * 59.99707 * 3 2 1 7 7 C 1.37869 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47457 * 179.97438 * 10 9 7 12 12 N 1.30975 * 126.42869 * 90.00655 * 11 10 9 13 13 C 1.35251 * 105.57535 * 179.97438 * 12 11 10 14 14 C 1.48322 * 126.41622 * 180.02562 * 13 12 11 15 15 C 1.39374 * 120.10926 * 179.97438 * 14 13 12 16 16 C 1.37916 * 119.93243 * 179.97438 * 15 14 13 17 17 C 1.38633 * 120.15106 * 359.97438 * 16 15 14 18 18 F 1.35094 * 119.88882 * 180.02562 * 17 16 15 19 19 C 1.38470 * 120.21946 * 0.04527 * 17 16 15 20 20 C 1.38252 * 120.07033 * 359.69987 * 19 17 16 21 21 F 1.35099 * 120.07484 * 180.27601 * 20 19 17 22 22 N 1.30806 * 107.16202 * 359.97438 * 13 12 11 23 23 O 1.21293 * 110.08817 * 359.97438 * 22 13 12 24 24 H 0.97003 * 119.99582 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46770 * 60.00286 * 9 7 2 26 26 H 1.08994 * 109.47678 * 300.00504 * 9 7 2 27 27 H 1.09006 * 109.46599 * 60.00546 * 10 9 7 28 28 H 1.08994 * 109.47386 * 300.01048 * 10 9 7 29 29 H 1.08001 * 120.03704 * 359.95281 * 15 14 13 30 30 H 1.07995 * 119.92617 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.96700 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4916 -4.9671 0.0033 12 7 1.1017 -5.6415 -1.0496 13 6 0.4707 -6.7360 -0.5667 14 6 -0.1533 -7.8176 -1.3671 15 6 -0.7718 -8.8915 -0.7294 16 6 -1.3513 -9.8949 -1.4773 17 6 -1.3207 -9.8376 -2.8621 18 9 -1.8905 -10.8231 -3.5895 19 6 -0.7075 -8.7737 -3.5022 20 6 -0.1283 -7.7602 -2.7614 21 9 0.4650 -6.7194 -3.3858 22 7 0.5149 -6.6625 0.7386 23 8 1.0975 -5.6548 1.0796 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5574 -0.8881 26 1 0.6246 -2.5563 0.8918 27 1 2.8724 -3.6040 0.8910 28 1 2.8712 -3.6047 -0.8889 29 1 -0.7969 -8.9381 0.3493 30 1 -1.8309 -10.7268 -0.9831 31 1 -0.6857 -8.7334 -4.5812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340739817.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:38 Heat of formation + Delta-G solvation = -23.927096 kcal Electronic energy + Delta-G solvation = -20303.906647 eV Core-core repulsion = 16609.759654 eV Total energy + Delta-G solvation = -3694.146993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.15380 -50.09632 -46.60254 -40.03666 -37.11595 -36.21761 -34.49212 -32.57770 -31.90632 -31.21585 -27.77568 -25.84875 -25.02755 -23.89346 -23.40499 -21.99127 -19.46819 -19.23879 -18.86826 -18.47354 -17.99700 -17.31330 -17.11919 -16.70765 -16.49498 -16.41719 -15.73984 -15.57164 -15.22093 -15.01951 -14.36424 -14.05526 -13.78288 -13.74904 -13.46273 -13.33570 -12.85333 -12.76728 -12.64749 -12.49858 -12.15923 -11.96151 -11.93853 -11.33328 -11.06562 -10.57543 -10.26425 -9.75273 -8.20365 -6.32272 -0.75162 -0.16892 0.17317 1.19500 1.46026 1.46753 1.59788 1.74989 2.23939 2.29810 2.44444 2.62991 2.79151 3.15371 3.15739 3.45465 3.75547 3.80547 4.00326 4.31152 4.45726 4.51684 4.57227 4.58353 4.72348 4.81028 4.88462 4.92895 4.97492 5.43466 5.51509 5.52770 5.77813 6.13021 6.83721 6.98003 7.38046 8.92338 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.033949 B = 0.003339 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.559194 B = 8384.001432 C = 8790.902260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.254 1.254 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.033 3.967 10 C -0.014 4.014 11 C 0.217 3.783 12 N -0.502 5.502 13 C 0.198 3.802 14 C -0.088 4.088 15 C -0.022 4.022 16 C -0.146 4.146 17 C 0.153 3.847 18 F -0.122 7.122 19 C -0.189 4.189 20 C 0.153 3.847 21 F -0.124 7.124 22 N -0.388 5.388 23 O 0.071 5.929 24 H 0.263 0.737 25 H -0.009 1.009 26 H 0.000 1.000 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.163 0.837 30 H 0.187 0.813 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -20.698 -3.376 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.097 0.903 9 C -0.005 4.005 10 C -0.053 4.053 11 C -0.002 4.002 12 N -0.235 5.235 13 C -0.071 4.071 14 C -0.091 4.091 15 C -0.042 4.042 16 C -0.165 4.165 17 C 0.133 3.867 18 F -0.101 7.101 19 C -0.208 4.208 20 C 0.132 3.868 21 F -0.102 7.102 22 N -0.098 5.098 23 O 0.014 5.986 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.018 0.982 27 H 0.139 0.861 28 H 0.132 0.868 29 H 0.180 0.820 30 H 0.204 0.796 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.161 -21.250 -3.312 21.538 hybrid contribution 0.101 1.394 -0.280 1.425 sum -1.060 -19.857 -3.592 20.207 Atomic orbital electron populations 1.70128 1.08093 1.27864 1.51474 1.26009 0.95681 1.03637 0.94578 0.85314 0.79418 0.78381 0.77416 1.17712 1.20965 1.20672 1.21591 0.94205 0.90902 1.50745 0.90262 1.18959 0.93996 0.91930 0.95642 1.20575 0.96746 0.81433 1.06565 1.29543 0.94107 0.97106 0.79487 1.72194 1.16728 1.05439 1.29168 1.24044 0.99636 0.95323 0.88144 1.17715 1.05915 0.95054 0.90427 1.21082 0.91757 0.89507 1.01860 1.21417 1.02422 1.01468 0.91158 1.17463 0.94112 0.85543 0.89604 1.91572 1.81798 1.59146 1.77555 1.21123 1.02973 0.93702 1.03031 1.17473 0.94830 0.85712 0.88834 1.91607 1.80811 1.55622 1.82200 1.74753 1.16322 1.04195 1.14503 1.85236 1.52302 1.24970 1.36100 0.92787 0.99019 0.98169 0.86098 0.86837 0.81985 0.79609 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.97 13.29 21.44 0.28 -55.68 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 4 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.54 -28.45 9.11 25.60 0.23 -28.22 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.03 1.66 4.95 29.85 0.15 1.81 16 10 C -0.01 -0.54 5.78 29.85 0.17 -0.37 16 11 C 0.22 8.27 7.75 88.35 0.68 8.96 16 12 N -0.50 -19.88 10.25 -302.46 -3.10 -22.98 16 13 C 0.20 6.99 7.78 137.24 1.07 8.05 16 14 C -0.09 -2.45 5.88 -20.00 -0.12 -2.56 16 15 C -0.02 -0.43 9.69 22.47 0.22 -0.21 16 16 C -0.15 -2.03 10.01 22.29 0.22 -1.81 16 17 C 0.15 2.46 7.30 22.42 0.16 2.62 16 18 F -0.12 -1.89 17.26 44.97 0.78 -1.12 16 19 C -0.19 -3.61 9.99 22.33 0.22 -3.38 16 20 C 0.15 4.07 7.28 22.59 0.16 4.23 16 21 F -0.12 -4.05 15.80 44.97 0.71 -3.34 16 22 N -0.39 -13.61 11.86 -59.06 -0.70 -14.31 16 23 O 0.07 2.60 11.29 74.64 0.84 3.44 16 24 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 25 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 26 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.12 3.86 8.14 -2.38 -0.02 3.84 16 28 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 29 H 0.16 2.77 7.87 -2.91 -0.02 2.75 16 30 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 31 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -66.51 294.19 5.66 -60.85 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: 1.18 Total: -0.94 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 3.64 Total: -10.48 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.51 Total: -92.97 kcal Atomic # 8 Polarization: 2.60 SS G_CDS: 0.84 Total: 3.44 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 1.49 Total: -4.46 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -66.51 5.66 -60.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340739817.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.918 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds