Wall clock time and date at job start Tue Mar 31 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00242 * 2 1 4 4 H 1.48497 * 109.47271 * 240.00222 * 3 2 1 5 5 H 1.48507 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47495 * 119.99494 * 3 2 1 7 7 C 1.37880 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 184.56393 * 7 2 1 9 9 C 1.50701 * 120.00059 * 4.56576 * 7 2 1 10 10 C 1.52999 * 115.55135 * 93.50454 * 9 7 2 11 11 N 1.46499 * 109.47040 * 55.40865 * 10 9 7 12 12 C 1.34780 * 119.99495 * 185.02937 * 11 10 9 13 13 O 1.21519 * 120.00422 * 5.09798 * 12 11 10 14 14 C 1.48082 * 119.99501 * 185.09633 * 12 11 10 15 15 N 1.32774 * 119.74090 * 354.29358 * 14 12 11 16 16 C 1.31463 * 121.65996 * 179.68087 * 15 14 12 17 17 C 1.38644 * 120.93621 * 0.59221 * 16 15 14 18 18 C 1.38515 * 119.37801 * 359.42185 * 17 16 15 19 19 C 1.38804 * 118.46966 * 0.28084 * 18 17 16 20 20 Cl 1.73606 * 120.48468 * 180.02562 * 19 18 17 21 21 C 1.52998 * 117.49834 * 239.17340 * 9 7 2 22 22 C 1.53002 * 117.49625 * 307.83468 * 9 7 2 23 23 H 0.96993 * 120.00374 * 5.00800 * 1 2 3 24 24 H 1.09007 * 109.46700 * 295.41069 * 10 9 7 25 25 H 1.08995 * 109.47221 * 175.41368 * 10 9 7 26 26 H 0.96999 * 120.00289 * 5.03168 * 11 10 9 27 27 H 1.07999 * 119.53334 * 180.29438 * 16 15 14 28 28 H 1.08008 * 120.31290 * 179.69849 * 17 16 15 29 29 H 1.07994 * 120.76452 * 180.30114 * 18 17 16 30 30 H 1.08999 * 117.50013 * 215.00182 * 21 9 7 31 31 H 1.08999 * 117.50035 * 0.02664 * 21 9 7 32 32 H 1.08993 * 117.50053 * 359.97191 * 22 9 7 33 33 H 1.08999 * 117.49745 * 144.97685 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0819 -1.1955 0.0750 9 6 1.2546 -2.4972 -0.1028 10 6 1.0942 -3.0558 -1.5181 11 7 2.4127 -3.1905 -2.1422 12 6 2.5121 -3.5698 -3.4317 13 8 1.5089 -3.7102 -4.1030 14 6 3.8440 -3.8153 -4.0306 15 7 4.9402 -3.5517 -3.3293 16 6 6.1412 -3.7611 -3.8214 17 6 6.3089 -4.2575 -5.1050 18 6 5.1929 -4.5469 -5.8728 19 6 3.9371 -4.3218 -5.3261 20 17 2.5031 -4.6668 -6.2419 21 6 1.4241 -3.5021 1.0384 22 6 0.1094 -2.7333 0.8840 23 1 -0.4850 0.8367 -0.0733 24 1 0.4799 -2.3765 -2.1093 25 1 0.6130 -4.0327 -1.4707 26 1 3.2140 -3.0068 -1.6275 27 1 7.0095 -3.5389 -3.2189 28 1 7.3003 -4.4212 -5.5010 29 1 5.2975 -4.9390 -6.8736 30 1 1.4213 -4.5612 0.7808 31 1 2.0776 -3.2206 1.8640 32 1 -0.1013 -1.9464 1.6081 33 1 -0.7584 -3.2864 0.5248 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352648648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:31 Heat of formation + Delta-G solvation = 25.442842 kcal Electronic energy + Delta-G solvation = -19106.720839 eV Core-core repulsion = 15966.511368 eV Total energy + Delta-G solvation = -3140.209471 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54309 -38.55142 -36.68044 -36.44640 -33.47520 -32.54084 -31.87874 -31.25709 -26.71239 -25.38235 -24.15964 -23.45931 -21.10241 -20.23097 -19.41868 -17.82801 -16.98148 -16.49353 -15.94219 -15.14698 -15.05158 -14.78296 -14.58303 -13.90061 -13.82233 -13.51491 -12.94390 -12.69201 -12.39064 -11.98991 -11.88684 -11.54157 -11.20314 -10.95784 -10.87196 -10.51416 -10.16294 -10.06552 -10.02287 -9.49205 -9.10748 -9.08609 -9.04362 -8.39131 -8.27270 -7.99548 -6.03874 -4.12903 0.49030 0.88765 2.06280 2.97909 3.30550 3.35854 3.38131 3.56828 3.87695 4.22586 4.39667 4.50452 4.66750 4.75903 5.06122 5.22143 5.28483 5.43855 5.68656 5.70601 6.07582 6.23088 6.37451 6.50189 6.55035 6.76333 6.86510 7.18143 7.25480 7.41241 7.55889 7.66725 7.84640 8.30442 8.37763 8.81321 8.88495 9.53881 11.03095 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.005144 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.393591 B = 5441.547316 C = 5883.176318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.495 4.495 8 H 0.060 0.940 9 C 0.017 3.983 10 C 0.161 3.839 11 N -0.675 5.675 12 C 0.549 3.451 13 O -0.529 6.529 14 C 0.101 3.899 15 N -0.440 5.440 16 C 0.099 3.901 17 C -0.148 4.148 18 C -0.079 4.079 19 C -0.045 4.045 20 Cl -0.018 7.018 21 C -0.214 4.214 22 C -0.134 4.134 23 H 0.261 0.739 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.411 0.589 27 H 0.168 0.832 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.598 -9.075 -9.669 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.533 4.533 8 H 0.078 0.922 9 C 0.016 3.984 10 C 0.038 3.962 11 N -0.324 5.324 12 C 0.332 3.668 13 O -0.406 6.406 14 C -0.038 4.038 15 N -0.151 5.151 16 C -0.060 4.060 17 C -0.168 4.168 18 C -0.105 4.105 19 C -0.075 4.075 20 Cl 0.011 6.989 21 C -0.251 4.251 22 C -0.172 4.172 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.248 0.752 27 H 0.185 0.815 28 H 0.164 0.836 29 H 0.166 0.834 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.405 -8.737 -9.267 16.447 hybrid contribution 0.928 0.722 -0.771 1.406 sum 11.333 -8.016 -10.038 17.130 Atomic orbital electron populations 1.69992 1.05826 1.26968 1.48443 1.24964 0.94817 0.98917 0.94286 0.86725 0.79718 0.83310 0.78656 1.20222 1.21306 1.20188 1.20292 0.92541 0.88622 1.51837 0.92210 1.19050 0.99810 0.93960 0.85534 1.21087 0.82221 0.98016 0.94864 1.45819 1.11656 1.64516 1.10414 1.17734 0.86476 0.79550 0.83077 1.90836 1.36066 1.52760 1.60896 1.21440 0.94391 0.97434 0.90559 1.67813 0.98268 1.13373 1.35628 1.22977 0.94958 0.94579 0.93518 1.22346 0.99674 0.99318 0.95444 1.21561 0.90171 0.97869 1.00902 1.22036 0.90433 1.01359 0.93678 1.98425 1.36026 1.92568 1.71839 1.23102 1.02625 0.95420 1.03963 1.22435 0.89970 1.00741 1.04022 0.92880 0.91190 0.94171 0.75224 0.81456 0.83574 0.83384 0.91858 0.90380 0.88863 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.51 11.91 55.43 0.66 -23.85 16 2 C 0.07 1.99 5.41 -17.82 -0.10 1.90 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.99 8.31 -34.44 -0.29 -13.28 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.02 0.41 1.73 -155.66 -0.27 0.14 16 10 C 0.16 3.68 5.59 -4.04 -0.02 3.66 16 11 N -0.68 -14.05 5.35 -61.17 -0.33 -14.37 16 12 C 0.55 11.03 7.78 -12.22 -0.10 10.93 16 13 O -0.53 -11.65 13.96 5.35 0.07 -11.58 16 14 C 0.10 1.69 6.75 -82.98 -0.56 1.13 16 15 N -0.44 -6.57 9.55 -9.78 -0.09 -6.67 16 16 C 0.10 1.05 11.18 -17.56 -0.20 0.85 16 17 C -0.15 -1.25 10.11 -39.33 -0.40 -1.65 16 18 C -0.08 -0.79 9.98 -39.27 -0.39 -1.19 16 19 C -0.04 -0.64 6.37 -38.93 -0.25 -0.88 16 20 Cl -0.02 -0.27 26.05 -51.86 -1.35 -1.62 16 21 C -0.21 -4.58 9.93 -26.69 -0.27 -4.85 16 22 C -0.13 -3.12 8.88 -26.69 -0.24 -3.36 16 23 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 24 H 0.07 1.79 8.10 -51.92 -0.42 1.37 16 25 H 0.04 0.88 8.10 -51.93 -0.42 0.45 16 26 H 0.41 8.31 7.49 -40.82 -0.31 8.00 16 27 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.15 0.68 8.06 -52.48 -0.42 0.25 16 29 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.09 2.37 7.63 -51.93 -0.40 1.97 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -30.22 305.76 -8.14 -38.36 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -3.63 Total: 5.76 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.07 Total: -6.60 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.24 Total: -44.89 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.35 Total: -1.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.22 -8.14 -38.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352648648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.802 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds