Wall clock time and date at job start Tue Mar 31 2020 01:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00242 * 2 1 4 4 H 1.48497 * 109.47271 * 240.00222 * 3 2 1 5 5 H 1.48507 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47495 * 119.99494 * 3 2 1 7 7 C 1.37880 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 184.56393 * 7 2 1 9 9 C 1.50701 * 120.00059 * 4.56576 * 7 2 1 10 10 C 1.52999 * 115.55135 * 93.50454 * 9 7 2 11 11 N 1.46499 * 109.47040 * 55.40865 * 10 9 7 12 12 C 1.34780 * 119.99495 * 185.02937 * 11 10 9 13 13 O 1.21519 * 120.00422 * 5.09798 * 12 11 10 14 14 C 1.48082 * 119.99501 * 185.09633 * 12 11 10 15 15 N 1.32774 * 119.74090 * 354.29358 * 14 12 11 16 16 C 1.31463 * 121.65996 * 179.68087 * 15 14 12 17 17 C 1.38644 * 120.93621 * 0.59221 * 16 15 14 18 18 C 1.38515 * 119.37801 * 359.42185 * 17 16 15 19 19 C 1.38804 * 118.46966 * 0.28084 * 18 17 16 20 20 Cl 1.73606 * 120.48468 * 180.02562 * 19 18 17 21 21 C 1.52998 * 117.49834 * 239.17340 * 9 7 2 22 22 C 1.53002 * 117.49625 * 307.83468 * 9 7 2 23 23 H 0.96993 * 120.00374 * 5.00800 * 1 2 3 24 24 H 1.09007 * 109.46700 * 295.41069 * 10 9 7 25 25 H 1.08995 * 109.47221 * 175.41368 * 10 9 7 26 26 H 0.96999 * 120.00289 * 5.03168 * 11 10 9 27 27 H 1.07999 * 119.53334 * 180.29438 * 16 15 14 28 28 H 1.08008 * 120.31290 * 179.69849 * 17 16 15 29 29 H 1.07994 * 120.76452 * 180.30114 * 18 17 16 30 30 H 1.08999 * 117.50013 * 215.00182 * 21 9 7 31 31 H 1.08999 * 117.50035 * 0.02664 * 21 9 7 32 32 H 1.08993 * 117.50053 * 359.97191 * 22 9 7 33 33 H 1.08999 * 117.49745 * 144.97685 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0819 -1.1955 0.0750 9 6 1.2546 -2.4972 -0.1028 10 6 1.0942 -3.0558 -1.5181 11 7 2.4127 -3.1905 -2.1422 12 6 2.5121 -3.5698 -3.4317 13 8 1.5089 -3.7102 -4.1030 14 6 3.8440 -3.8153 -4.0306 15 7 4.9402 -3.5517 -3.3293 16 6 6.1412 -3.7611 -3.8214 17 6 6.3089 -4.2575 -5.1050 18 6 5.1929 -4.5469 -5.8728 19 6 3.9371 -4.3218 -5.3261 20 17 2.5031 -4.6668 -6.2419 21 6 1.4241 -3.5021 1.0384 22 6 0.1094 -2.7333 0.8840 23 1 -0.4850 0.8367 -0.0733 24 1 0.4799 -2.3765 -2.1093 25 1 0.6130 -4.0327 -1.4707 26 1 3.2140 -3.0068 -1.6275 27 1 7.0095 -3.5389 -3.2189 28 1 7.3003 -4.4212 -5.5010 29 1 5.2975 -4.9390 -6.8736 30 1 1.4213 -4.5612 0.7808 31 1 2.0776 -3.2206 1.8640 32 1 -0.1013 -1.9464 1.6081 33 1 -0.7584 -3.2864 0.5248 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352648648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:30 Heat of formation + Delta-G solvation = 6.004234 kcal Electronic energy + Delta-G solvation = -19107.563760 eV Core-core repulsion = 15966.511368 eV Total energy + Delta-G solvation = -3141.052392 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62690 -40.00406 -38.43378 -37.57198 -35.05888 -33.94076 -33.51578 -32.26214 -28.39264 -27.30953 -25.31730 -24.41867 -22.90402 -21.65722 -21.27404 -19.21805 -18.12921 -17.88200 -17.25129 -16.69730 -16.49147 -16.35656 -16.09148 -15.47843 -15.13316 -14.63079 -14.48299 -14.17266 -13.72940 -13.44211 -13.34995 -13.05326 -12.92517 -12.79050 -12.45477 -12.37272 -11.98251 -11.36802 -11.20048 -11.01387 -10.88986 -10.44638 -10.35664 -10.16450 -10.01527 -9.73866 -8.09418 -6.22632 -0.51352 0.03791 1.03282 1.41604 1.43259 1.49592 1.75094 2.17996 2.42850 2.73440 3.15522 3.17967 3.51909 3.67768 3.76906 3.90528 4.22100 4.28395 4.43000 4.53911 4.65481 4.70513 4.82612 4.94158 4.98712 5.04408 5.31243 5.45226 5.54033 5.60173 5.74239 5.78334 6.37096 6.53122 6.80721 6.84216 7.25547 7.46115 8.96994 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.005144 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.393591 B = 5441.547316 C = 5883.176318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.060 0.940 9 C -0.006 4.006 10 C 0.177 3.823 11 N -0.679 5.679 12 C 0.544 3.456 13 O -0.559 6.559 14 C 0.064 3.936 15 N -0.468 5.468 16 C 0.095 3.905 17 C -0.114 4.114 18 C -0.074 4.074 19 C -0.055 4.055 20 Cl -0.038 7.038 21 C -0.182 4.182 22 C -0.142 4.142 23 H 0.258 0.742 24 H 0.031 0.969 25 H 0.047 0.953 26 H 0.414 0.586 27 H 0.204 0.796 28 H 0.200 0.800 29 H 0.183 0.817 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.155 -9.911 -10.511 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.539 4.539 8 H 0.078 0.922 9 C -0.007 4.007 10 C 0.053 3.947 11 N -0.328 5.328 12 C 0.329 3.671 13 O -0.438 6.438 14 C -0.073 4.073 15 N -0.180 5.180 16 C -0.065 4.065 17 C -0.133 4.133 18 C -0.100 4.100 19 C -0.086 4.086 20 Cl -0.009 7.009 21 C -0.220 4.220 22 C -0.180 4.180 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.250 0.750 27 H 0.221 0.779 28 H 0.217 0.783 29 H 0.200 0.800 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.980 -9.583 -10.104 19.732 hybrid contribution -0.008 0.926 -0.552 1.078 sum 13.973 -8.657 -10.656 19.589 Atomic orbital electron populations 1.70115 1.07051 1.27346 1.49865 1.25671 0.95537 1.01948 0.94404 0.85802 0.78507 0.79695 0.78763 1.20236 1.21463 1.19138 1.20579 0.92702 0.89739 1.50858 0.92221 1.19112 1.00513 0.94471 0.86561 1.20701 0.83057 0.97173 0.93816 1.45724 1.10652 1.65355 1.11063 1.18364 0.88110 0.78220 0.82417 1.90798 1.37802 1.53833 1.61380 1.20847 0.93147 1.01415 0.91896 1.67713 0.99256 1.14479 1.36555 1.23731 0.94250 0.93513 0.95021 1.22936 1.01367 0.95230 0.93782 1.22036 0.88650 0.96876 1.02435 1.22252 0.91394 1.02003 0.92952 1.98413 1.37707 1.92738 1.72009 1.23074 1.00559 0.96111 1.02218 1.22329 0.91066 1.00924 1.03671 0.93244 0.95088 0.93491 0.74952 0.77927 0.78258 0.80007 0.89354 0.89969 0.91279 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.16 11.91 21.45 0.26 -51.91 16 2 C 0.02 1.36 5.41 84.66 0.46 1.82 16 3 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.50 -26.61 8.31 25.60 0.21 -26.39 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 9 C -0.01 -0.29 1.73 -52.93 -0.09 -0.38 16 10 C 0.18 8.34 5.59 86.38 0.48 8.82 16 11 N -0.68 -29.02 5.35 -465.75 -2.49 -31.51 16 12 C 0.54 22.53 7.78 86.86 0.68 23.21 16 13 O -0.56 -25.76 13.96 -3.78 -0.05 -25.82 16 14 C 0.06 2.12 6.75 41.90 0.28 2.40 16 15 N -0.47 -13.27 9.55 -184.85 -1.77 -15.04 16 16 C 0.10 1.63 11.18 84.85 0.95 2.57 16 17 C -0.11 -1.30 10.11 22.43 0.23 -1.07 16 18 C -0.07 -1.21 9.98 22.47 0.22 -0.98 16 19 C -0.06 -1.51 6.37 22.69 0.14 -1.36 16 20 Cl -0.04 -1.14 26.05 -2.72 -0.07 -1.21 16 21 C -0.18 -7.65 9.93 30.62 0.30 -7.35 16 22 C -0.14 -6.73 8.88 30.62 0.27 -6.45 16 23 H 0.26 14.39 8.32 -92.71 -0.77 13.62 16 24 H 0.03 1.68 8.10 -2.38 -0.02 1.66 16 25 H 0.05 2.11 8.10 -2.39 -0.02 2.09 16 26 H 0.41 17.00 7.49 -92.71 -0.69 16.30 16 27 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 28 H 0.20 0.25 8.06 -2.91 -0.02 0.22 16 29 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 32 H 0.07 3.60 7.63 -2.39 -0.02 3.58 16 33 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -69.23 305.76 2.49 -66.74 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.45 Total: 18.34 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 4.14 Total: -5.16 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -4.00 Total: -98.45 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.07 Total: -1.21 kcal Total: -69.23 2.49 -66.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352648648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.741 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds