Wall clock time and date at job start Tue Mar 31 2020 02:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31238 * 124.05316 * 2 1 4 4 N 1.27334 * 120.03504 * 179.97438 * 3 2 1 5 5 S 1.56638 * 109.74436 * 0.02562 * 4 3 2 6 6 C 1.38245 * 124.05644 * 179.97438 * 2 1 3 7 7 C 1.47172 * 128.47622 * 0.03331 * 6 2 1 8 8 O 1.21628 * 119.99738 * 352.33425 * 7 6 2 9 9 N 1.34774 * 120.00145 * 172.32672 * 7 6 2 10 10 C 1.46504 * 119.99919 * 2.95039 * 9 7 6 11 11 C 1.50701 * 109.46887 * 82.55140 * 10 9 7 12 12 H 1.08003 * 120.00527 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99642 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99731 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00151 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47129 * 90.00085 * 15 13 11 17 17 H 1.48503 * 109.46976 * 210.00070 * 15 13 11 18 18 H 1.48497 * 109.46744 * 329.99888 * 15 13 11 19 19 C 1.46499 * 119.99876 * 182.94550 * 9 7 6 20 20 C 1.52994 * 109.47300 * 85.10787 * 19 9 7 21 21 C 1.47194 * 109.47448 * 179.97438 * 20 19 9 22 22 N 7.96533 * 87.05790 * 192.85902 * 2 1 3 23 23 H 1.08993 * 109.47101 * 270.03596 * 1 2 3 24 24 H 1.09000 * 109.46892 * 30.03819 * 1 2 3 25 25 H 1.08999 * 109.46915 * 150.03670 * 1 2 3 26 26 H 1.08997 * 109.46649 * 202.54894 * 10 9 7 27 27 H 1.08995 * 109.46776 * 322.54752 * 10 9 7 28 28 H 0.97005 * 120.00112 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.46951 * 205.10691 * 19 9 7 30 30 H 1.08998 * 109.47459 * 325.10498 * 19 9 7 31 31 H 1.09000 * 109.47040 * 299.99850 * 20 19 9 32 32 H 1.09004 * 109.47537 * 59.99520 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9981 0.0005 5 16 3.9367 -0.5096 0.0004 6 6 2.2812 -1.1453 0.0005 7 6 1.8395 -2.5492 0.0005 8 8 0.6611 -2.8159 0.1404 9 7 2.7406 -3.5392 -0.1548 10 6 4.1671 -3.2217 -0.2587 11 6 4.7428 -3.0389 1.1219 12 1 4.1095 -3.1479 1.9900 13 6 6.0779 -2.7315 1.2768 14 7 6.5803 -2.5714 2.4816 15 14 7.1732 -2.5423 -0.2246 16 1 7.1553 -1.1274 -0.6752 17 1 8.5628 -2.9332 0.1240 18 1 6.6721 -3.4158 -1.3159 19 6 2.2938 -4.9329 -0.2196 20 6 1.8936 -5.2740 -1.6563 21 6 1.4452 -6.6744 -1.7215 22 7 1.0982 -7.7553 -1.7704 23 1 -0.3633 0.0006 1.0276 24 1 -0.3633 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5133 26 1 4.6849 -4.0373 -0.7633 27 1 4.2938 -2.3022 -0.8301 28 1 7.5197 -2.3555 2.5907 29 1 3.1042 -5.5894 0.0974 30 1 1.4361 -5.0705 0.4389 31 1 1.0832 -4.6175 -1.9733 32 1 2.7512 -5.1364 -2.3149 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357655210.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:42 Heat of formation + Delta-G solvation = 66.189555 kcal Electronic energy + Delta-G solvation = -19539.669114 eV Core-core repulsion = 16435.563010 eV Total energy + Delta-G solvation = -3104.106104 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27213 -39.38363 -36.82298 -35.60205 -33.37884 -32.65229 -31.60854 -28.39077 -27.93640 -26.32627 -24.30735 -23.12483 -21.23185 -18.66706 -18.12786 -17.83094 -17.23086 -16.67498 -15.78205 -15.41161 -14.87369 -14.72687 -14.26423 -14.13940 -13.54283 -13.26875 -12.88669 -12.78806 -12.63709 -12.60788 -12.44115 -12.30872 -11.95879 -11.71804 -11.39302 -11.12631 -10.91310 -10.77576 -10.59361 -10.02841 -9.66094 -9.37360 -9.18558 -9.11553 -8.81787 -8.26259 -6.58535 -4.59572 0.39252 1.57861 2.27344 2.50017 2.69332 2.79106 2.94424 3.00013 3.07164 3.28399 3.43971 3.94229 4.13822 4.51031 4.71182 4.86893 5.07385 5.14055 5.17555 5.43668 5.76614 5.81069 5.85636 5.88414 6.00786 6.01605 6.15239 6.41457 6.80985 6.94806 7.54764 7.60235 7.95685 8.34807 8.40621 8.49585 8.94500 10.51663 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.009291 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.892865 B = 3013.073380 C = 4852.049290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.081 3.919 3 N -0.280 5.280 4 N -0.341 5.341 5 S 0.550 5.450 6 C -0.323 4.323 7 C 0.611 3.389 8 O -0.542 6.542 9 N -0.587 5.587 10 C 0.199 3.801 11 C -0.543 4.543 12 H 0.089 0.911 13 C 0.089 3.911 14 N -0.863 5.863 15 Si 0.845 3.155 16 H -0.260 1.260 17 H -0.273 1.273 18 H -0.255 1.255 19 C 0.129 3.871 20 C -0.048 4.048 21 C 0.219 3.781 22 N -0.444 5.444 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.023 0.977 28 H 0.275 0.725 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 0.459 -7.650 8.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 N -0.142 5.142 4 N -0.319 5.319 5 S 0.693 5.307 6 C -0.462 4.462 7 C 0.398 3.602 8 O -0.421 6.421 9 N -0.317 5.317 10 C 0.075 3.925 11 C -0.586 4.586 12 H 0.107 0.893 13 C -0.119 4.119 14 N -0.498 5.498 15 Si 0.669 3.331 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.179 1.179 19 C 0.005 3.995 20 C -0.089 4.089 21 C -0.099 4.099 22 N -0.121 5.121 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.686 0.032 -7.556 8.407 hybrid contribution -0.167 -0.049 -0.439 0.473 sum -3.853 -0.018 -7.996 8.876 Atomic orbital electron populations 1.20309 0.84987 1.03693 1.03576 1.22747 0.99586 0.86028 0.98601 1.70719 0.97662 1.28213 1.17581 1.78228 1.09213 1.23459 1.21042 1.84183 1.07482 0.94395 1.44644 1.27453 0.99130 0.99389 1.20277 1.16454 0.85039 0.82484 0.76220 1.90728 1.16590 1.83416 1.51411 1.47651 1.08231 1.05119 1.70711 1.20190 0.77077 0.96404 0.98820 1.21438 0.95712 1.49750 0.91660 0.89275 1.24863 0.97468 0.93694 0.95890 1.69848 1.14835 1.43620 1.21486 0.87259 0.81694 0.80406 0.83730 1.18485 1.19745 1.17877 1.21210 1.02153 0.82479 0.93694 1.19781 1.03630 0.84325 1.01159 1.28996 0.93007 0.94776 0.93158 1.81220 1.09675 1.12625 1.08583 0.90156 0.90854 0.88979 0.92347 0.96042 0.91483 0.88552 0.89206 0.86946 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 9.83 36.01 0.35 -0.56 16 2 C 0.08 1.44 7.00 -82.84 -0.58 0.86 16 3 N -0.28 -5.41 11.54 33.42 0.39 -5.03 16 4 N -0.34 -6.81 12.51 60.35 0.75 -6.05 16 5 S 0.55 10.46 16.93 -107.50 -1.82 8.64 16 6 C -0.32 -5.92 6.46 -35.95 -0.23 -6.15 16 7 C 0.61 10.80 7.55 -12.63 -0.10 10.71 16 8 O -0.54 -9.91 14.65 5.25 0.08 -9.83 16 9 N -0.59 -9.52 2.49 -176.43 -0.44 -9.96 16 10 C 0.20 3.51 3.80 -5.19 -0.02 3.49 16 11 C -0.54 -11.89 7.79 -34.44 -0.27 -12.16 16 12 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 13 C 0.09 2.05 5.23 -17.82 -0.09 1.96 16 14 N -0.86 -21.94 13.96 55.43 0.77 -21.17 16 15 Si 0.84 16.51 27.03 -169.99 -4.60 11.91 16 16 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.25 -4.48 6.54 56.52 0.37 -4.11 16 19 C 0.13 1.69 5.30 -4.05 -0.02 1.67 16 20 C -0.05 -0.48 5.99 -29.52 -0.18 -0.66 16 21 C 0.22 2.66 15.43 -20.75 -0.32 2.34 16 22 N -0.44 -6.58 18.54 42.16 0.78 -5.80 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.27 6.65 -51.93 -0.35 0.93 16 26 H 0.06 0.94 7.07 -51.93 -0.37 0.57 16 27 H 0.02 0.39 3.97 -24.93 -0.10 0.29 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.10 1.20 8.03 -51.93 -0.42 0.78 16 30 H 0.09 1.22 7.53 -51.93 -0.39 0.83 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -27.31 294.98 -3.99 -31.30 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -2.90 Total: 0.04 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.45 Total: 1.50 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 2.26 Total: -48.00 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -4.60 Total: 11.91 kcal Atomic # 16 Polarization: 10.46 SS G_CDS: -1.82 Total: 8.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.31 -3.99 -31.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357655210.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.494 kcal (2) G-P(sol) polarization free energy of solvation -27.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds