Wall clock time and date at job start Tue Mar 31 2020 02:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31238 * 124.05316 * 2 1 4 4 N 1.27334 * 120.03504 * 179.97438 * 3 2 1 5 5 S 1.56638 * 109.74436 * 0.02562 * 4 3 2 6 6 C 1.38245 * 124.05644 * 179.97438 * 2 1 3 7 7 C 1.47172 * 128.47622 * 0.03331 * 6 2 1 8 8 O 1.21628 * 119.99738 * 352.33425 * 7 6 2 9 9 N 1.34774 * 120.00145 * 172.32672 * 7 6 2 10 10 C 1.46504 * 119.99919 * 2.95039 * 9 7 6 11 11 C 1.50701 * 109.46887 * 82.55140 * 10 9 7 12 12 H 1.08003 * 120.00527 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99642 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99731 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00151 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47129 * 90.00085 * 15 13 11 17 17 H 1.48503 * 109.46976 * 210.00070 * 15 13 11 18 18 H 1.48497 * 109.46744 * 329.99888 * 15 13 11 19 19 C 1.46499 * 119.99876 * 182.94550 * 9 7 6 20 20 C 1.52994 * 109.47300 * 85.10787 * 19 9 7 21 21 C 1.47194 * 109.47448 * 179.97438 * 20 19 9 22 22 N 7.96533 * 87.05790 * 192.85902 * 2 1 3 23 23 H 1.08993 * 109.47101 * 270.03596 * 1 2 3 24 24 H 1.09000 * 109.46892 * 30.03819 * 1 2 3 25 25 H 1.08999 * 109.46915 * 150.03670 * 1 2 3 26 26 H 1.08997 * 109.46649 * 202.54894 * 10 9 7 27 27 H 1.08995 * 109.46776 * 322.54752 * 10 9 7 28 28 H 0.97005 * 120.00112 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.46951 * 205.10691 * 19 9 7 30 30 H 1.08998 * 109.47459 * 325.10498 * 19 9 7 31 31 H 1.09000 * 109.47040 * 299.99850 * 20 19 9 32 32 H 1.09004 * 109.47537 * 59.99520 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5121 0.9981 0.0005 5 16 3.9367 -0.5096 0.0004 6 6 2.2812 -1.1453 0.0005 7 6 1.8395 -2.5492 0.0005 8 8 0.6611 -2.8159 0.1404 9 7 2.7406 -3.5392 -0.1548 10 6 4.1671 -3.2217 -0.2587 11 6 4.7428 -3.0389 1.1219 12 1 4.1095 -3.1479 1.9900 13 6 6.0779 -2.7315 1.2768 14 7 6.5803 -2.5714 2.4816 15 14 7.1732 -2.5423 -0.2246 16 1 7.1553 -1.1274 -0.6752 17 1 8.5628 -2.9332 0.1240 18 1 6.6721 -3.4158 -1.3159 19 6 2.2938 -4.9329 -0.2196 20 6 1.8936 -5.2740 -1.6563 21 6 1.4452 -6.6744 -1.7215 22 7 1.0982 -7.7553 -1.7704 23 1 -0.3633 0.0006 1.0276 24 1 -0.3633 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5133 26 1 4.6849 -4.0373 -0.7633 27 1 4.2938 -2.3022 -0.8301 28 1 7.5197 -2.3555 2.5907 29 1 3.1042 -5.5894 0.0974 30 1 1.4361 -5.0705 0.4389 31 1 1.0832 -4.6175 -1.9733 32 1 2.7512 -5.1364 -2.3149 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357655210.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:41 Heat of formation + Delta-G solvation = 48.637363 kcal Electronic energy + Delta-G solvation = -19540.430234 eV Core-core repulsion = 16435.563010 eV Total energy + Delta-G solvation = -3104.867224 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72692 -40.75365 -37.90451 -36.94538 -34.88802 -34.11686 -32.79456 -29.92341 -29.20662 -27.72614 -25.49501 -24.70633 -22.60701 -20.07060 -19.52777 -19.26738 -18.46670 -18.06504 -17.11581 -16.84438 -16.26522 -15.85887 -15.65003 -15.45495 -14.91174 -14.55773 -14.36917 -14.08307 -13.81083 -13.77090 -13.61345 -13.54026 -13.25515 -12.97203 -12.75421 -12.57403 -12.21244 -12.04959 -11.82241 -11.72821 -11.07650 -10.97740 -10.62270 -10.60373 -10.40204 -9.62217 -8.32629 -6.38263 -1.07846 0.11240 0.78137 1.06488 1.43474 1.46665 1.53198 1.65488 1.84185 1.95052 2.14582 2.33796 3.02644 3.10680 3.18752 3.55146 3.79501 4.11108 4.17131 4.46492 4.48927 4.58726 4.75268 4.78584 4.86617 4.91421 5.05934 5.27896 5.32304 5.51573 6.08118 6.35830 6.60756 6.66894 6.86783 7.04311 7.22606 8.81594 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.009291 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.892865 B = 3013.073380 C = 4852.049290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.081 3.919 3 N -0.290 5.290 4 N -0.354 5.354 5 S 0.539 5.461 6 C -0.325 4.325 7 C 0.608 3.392 8 O -0.548 6.548 9 N -0.582 5.582 10 C 0.200 3.800 11 C -0.538 4.538 12 H 0.043 0.957 13 C 0.046 3.954 14 N -0.923 5.923 15 Si 0.885 3.115 16 H -0.252 1.252 17 H -0.284 1.284 18 H -0.212 1.212 19 C 0.124 3.876 20 C -0.034 4.034 21 C 0.245 3.755 22 N -0.492 5.492 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.034 0.966 28 H 0.272 0.728 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 0.369 -9.997 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 N -0.152 5.152 4 N -0.333 5.333 5 S 0.681 5.319 6 C -0.465 4.465 7 C 0.395 3.605 8 O -0.428 6.428 9 N -0.312 5.312 10 C 0.076 3.924 11 C -0.580 4.580 12 H 0.062 0.938 13 C -0.158 4.158 14 N -0.560 5.560 15 Si 0.706 3.294 16 H -0.177 1.177 17 H -0.210 1.210 18 H -0.134 1.134 19 C 0.000 4.000 20 C -0.075 4.075 21 C -0.072 4.072 22 N -0.170 5.170 23 H 0.107 0.893 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.375 -0.098 -9.924 10.846 hybrid contribution -0.099 0.042 0.365 0.380 sum -4.474 -0.056 -9.559 10.555 Atomic orbital electron populations 1.20459 0.82366 1.05053 1.04457 1.23326 1.01092 0.85307 0.97205 1.70732 0.97554 1.29071 1.17872 1.78202 1.09738 1.23919 1.21411 1.84136 1.08289 0.94348 1.45121 1.27713 0.98678 1.00177 1.19921 1.16445 0.85183 0.82444 0.76403 1.90727 1.16788 1.83435 1.51889 1.47638 1.07452 1.06068 1.70040 1.20139 0.77804 0.97957 0.96496 1.21461 0.95109 1.49030 0.92394 0.93832 1.25546 0.98849 0.93276 0.98093 1.69999 1.15053 1.46783 1.24196 0.86599 0.79400 0.81653 0.81793 1.17664 1.20968 1.13393 1.21374 1.02183 0.80794 0.95643 1.19770 1.05179 0.82980 0.99535 1.29208 0.91595 0.94677 0.91693 1.81259 1.11441 1.14214 1.10116 0.89342 0.88587 0.88515 0.89268 0.94925 0.91871 0.87803 0.90055 0.85828 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 9.83 71.24 0.70 -0.91 16 2 C 0.08 2.72 7.00 42.65 0.30 3.02 16 3 N -0.29 -10.80 11.54 -48.18 -0.56 -11.36 16 4 N -0.35 -13.82 12.51 37.02 0.46 -13.35 16 5 S 0.54 19.91 16.93 -56.49 -0.96 18.96 16 6 C -0.32 -11.38 6.46 24.62 0.16 -11.22 16 7 C 0.61 20.29 7.55 86.59 0.65 20.94 16 8 O -0.55 -18.85 14.65 -4.12 -0.06 -18.91 16 9 N -0.58 -17.48 2.49 -830.35 -2.07 -19.55 16 10 C 0.20 6.56 3.80 85.63 0.33 6.88 16 11 C -0.54 -23.43 7.79 25.60 0.20 -23.23 16 12 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 13 C 0.05 2.09 5.23 84.65 0.44 2.53 16 14 N -0.92 -48.46 13.96 21.45 0.30 -48.16 16 15 Si 0.88 32.30 27.03 68.60 1.85 34.15 16 16 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 17 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.21 -6.26 6.54 99.48 0.65 -5.61 16 19 C 0.12 2.90 5.30 86.38 0.46 3.36 16 20 C -0.03 -0.56 5.99 28.78 0.17 -0.39 16 21 C 0.25 5.33 15.43 89.44 1.38 6.71 16 22 N -0.49 -13.82 18.54 20.01 0.37 -13.45 16 23 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.10 2.41 6.65 -2.39 -0.02 2.39 16 26 H 0.09 2.46 7.07 -2.39 -0.02 2.44 16 27 H 0.03 1.07 3.97 -19.56 -0.08 0.99 16 28 H 0.27 13.53 8.31 -92.70 -0.77 12.75 16 29 H 0.10 2.30 8.03 -2.39 -0.02 2.28 16 30 H 0.08 2.07 7.53 -2.39 -0.02 2.05 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -60.37 294.98 5.18 -55.19 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.05 Total: 8.79 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 4.79 Total: 7.69 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -1.49 Total: -105.87 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.06 Total: -18.91 kcal Atomic # 14 Polarization: 32.30 SS G_CDS: 1.85 Total: 34.15 kcal Atomic # 16 Polarization: 19.91 SS G_CDS: -0.96 Total: 18.96 kcal Total: -60.37 5.18 -55.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357655210.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.828 kcal (2) G-P(sol) polarization free energy of solvation -60.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds