Wall clock time and date at job start Tue Mar 31 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00463 * 2 1 4 4 N 1.46499 * 109.47414 * 125.00440 * 3 2 1 5 5 C 1.46497 * 119.99756 * 262.83896 * 4 3 2 6 6 C 1.50694 * 109.47353 * 269.99938 * 5 4 3 7 7 H 1.08001 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00452 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00311 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99556 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46828 * 90.00411 * 10 8 6 12 12 H 1.48493 * 109.47185 * 210.00029 * 10 8 6 13 13 H 1.48501 * 109.47307 * 330.00414 * 10 8 6 14 14 C 1.34772 * 120.00071 * 82.83957 * 4 3 2 15 15 O 1.21530 * 119.99843 * 183.58465 * 14 4 3 16 16 C 1.48084 * 120.00090 * 3.58024 * 14 4 3 17 17 N 1.32773 * 119.74023 * 353.85887 * 16 14 4 18 18 C 1.31463 * 121.65950 * 179.97438 * 17 16 14 19 19 C 1.38639 * 120.94015 * 0.02562 * 18 17 16 20 20 C 1.38519 * 119.37506 * 0.26983 * 19 18 17 21 21 C 1.38803 * 118.47317 * 359.44424 * 20 19 18 22 22 Cl 1.73604 * 120.48586 * 180.25901 * 21 20 19 23 23 H 1.07990 * 120.00217 * 180.02562 * 1 2 3 24 24 H 1.08001 * 119.99236 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.99975 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47034 * 5.00226 * 3 2 1 27 27 H 1.09000 * 109.47049 * 245.00698 * 3 2 1 28 28 H 1.09004 * 109.47419 * 29.99944 * 5 4 3 29 29 H 1.09004 * 109.46950 * 149.99847 * 5 4 3 30 30 H 0.96995 * 119.99904 * 179.97438 * 9 8 6 31 31 H 1.08003 * 119.52780 * 180.02562 * 18 17 16 32 32 H 1.08001 * 120.31243 * 180.02562 * 19 18 17 33 33 H 1.07991 * 120.76430 * 179.72524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1313 5 6 2.6145 2.0050 2.3759 6 6 3.0412 3.4491 2.3161 7 1 3.5450 3.8275 1.4390 8 6 2.7893 4.2871 3.3817 9 7 3.1612 5.5475 3.3293 10 14 1.9185 3.6326 4.8991 11 1 2.9238 3.1167 5.8628 12 1 1.1403 4.7265 5.5338 13 1 0.9993 2.5341 4.5071 14 6 4.1988 0.7370 1.0272 15 8 4.9444 0.7025 1.9863 16 6 4.6143 0.1256 -0.2560 17 7 3.7515 0.0572 -1.2629 18 6 4.0803 -0.4771 -2.4181 19 6 5.3495 -0.9933 -2.6293 20 6 6.2803 -0.9489 -1.6044 21 6 5.9084 -0.3737 -0.3972 22 17 7.0355 -0.2843 0.9201 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5399 0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6213 1.4025 -0.9314 28 1 1.5333 1.9507 2.5034 29 1 3.1047 1.5158 3.2176 30 1 2.9837 6.1370 4.0788 31 1 3.3512 -0.5144 -3.2141 32 1 5.6089 -1.4296 -3.5826 33 1 7.2740 -1.3484 -1.7429 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359386385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:46 Heat of formation + Delta-G solvation = 51.352005 kcal Electronic energy + Delta-G solvation = -19568.208790 eV Core-core repulsion = 16429.122825 eV Total energy + Delta-G solvation = -3139.085965 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65581 -38.48940 -36.50967 -35.65004 -33.18988 -32.68698 -31.98938 -31.20159 -28.23523 -25.67480 -24.47053 -23.64455 -22.17522 -20.03076 -19.15980 -17.15809 -17.03209 -16.87064 -16.32011 -15.37088 -15.10435 -14.91078 -14.45302 -14.13887 -13.65479 -13.39355 -13.08048 -12.77842 -12.44495 -12.22276 -11.96301 -11.58427 -11.56722 -11.21211 -10.88524 -10.83851 -10.48438 -10.15337 -9.94584 -9.80519 -9.46292 -8.99498 -8.99038 -8.69608 -8.55203 -7.66211 -6.05708 -4.04463 0.55687 0.91697 2.16135 2.58689 3.07139 3.32639 3.38465 3.40816 3.64001 3.97429 4.26055 4.42898 4.54522 4.69084 4.73796 5.09570 5.19643 5.28973 5.38853 5.56831 5.68349 5.73376 5.97942 6.14913 6.24814 6.57530 6.75399 6.94397 6.97554 7.04036 7.41009 7.59221 7.63605 8.22441 8.48648 8.87349 8.98751 9.54376 11.07589 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.006482 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.788534 B = 4318.386787 C = 5331.121355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C 0.127 3.873 4 N -0.565 5.565 5 C 0.215 3.785 6 C -0.528 4.528 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.551 3.449 15 O -0.513 6.513 16 C 0.102 3.898 17 N -0.432 5.432 18 C 0.090 3.910 19 C -0.148 4.148 20 C -0.078 4.078 21 C -0.044 4.044 22 Cl -0.015 7.015 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.166 0.834 32 H 0.144 0.856 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -14.998 -13.470 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.153 4.153 3 C 0.004 3.996 4 N -0.294 5.294 5 C 0.095 3.905 6 C -0.567 4.567 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.335 3.665 15 O -0.388 6.388 16 C -0.037 4.037 17 N -0.144 5.144 18 C -0.069 4.069 19 C -0.169 4.169 20 C -0.104 4.104 21 C -0.074 4.074 22 Cl 0.014 6.986 23 H 0.108 0.892 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.162 0.838 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.148 -14.454 -12.530 19.163 hybrid contribution 0.469 -0.553 0.607 0.946 sum 1.617 -15.007 -11.923 19.235 Atomic orbital electron populations 1.23739 0.95873 1.01351 1.03331 1.23257 0.95556 0.99105 0.97332 1.21163 0.92757 0.94384 0.91338 1.47783 1.13919 1.51692 1.15994 1.19754 0.95655 0.93241 0.81829 1.21313 1.38957 0.92109 1.04282 0.90688 1.24830 0.95263 0.94681 0.98091 1.69892 1.47052 1.04729 1.31884 0.86872 0.80318 0.78880 0.83807 1.19867 1.21071 1.18954 1.17665 0.82815 0.80038 0.85935 1.90850 1.51714 1.58772 1.37450 1.21592 0.89555 0.97452 0.95126 1.68462 1.33205 1.12770 0.99995 1.23102 0.95280 0.93439 0.95086 1.22300 0.94321 1.00431 0.99813 1.21560 1.00948 0.97023 0.90906 1.22035 0.92617 1.00679 0.92051 1.98436 1.58444 1.96230 1.45460 0.89198 0.88545 0.88373 0.90394 0.86620 0.94906 0.94319 0.92574 0.81647 0.83796 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.77 14.32 29.02 0.42 -2.36 16 2 C -0.13 -2.03 8.73 -36.02 -0.31 -2.34 16 3 C 0.13 2.25 5.45 -5.19 -0.03 2.22 16 4 N -0.56 -12.35 2.46 -177.46 -0.44 -12.79 16 5 C 0.22 5.42 4.22 -5.20 -0.02 5.40 16 6 C -0.53 -15.40 9.94 -34.44 -0.34 -15.75 16 7 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 8 C 0.07 2.17 5.47 -17.82 -0.10 2.08 16 9 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 10 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 11 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 14 C 0.55 11.94 7.57 -12.22 -0.09 11.85 16 15 O -0.51 -12.56 13.54 5.34 0.07 -12.49 16 16 C 0.10 1.74 6.63 -82.98 -0.55 1.19 16 17 N -0.43 -6.12 4.74 -9.78 -0.05 -6.17 16 18 C 0.09 0.89 11.18 -17.56 -0.20 0.70 16 19 C -0.15 -1.25 10.11 -39.33 -0.40 -1.65 16 20 C -0.08 -0.82 9.98 -39.27 -0.39 -1.21 16 21 C -0.04 -0.65 6.37 -38.93 -0.25 -0.90 16 22 Cl -0.02 -0.25 26.06 -51.86 -1.35 -1.60 16 23 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 24 H 0.10 1.28 7.84 -52.49 -0.41 0.86 16 25 H 0.10 1.49 7.60 -52.49 -0.40 1.09 16 26 H 0.08 1.42 7.67 -51.93 -0.40 1.02 16 27 H 0.12 1.93 5.18 -53.01 -0.27 1.66 16 28 H 0.03 0.80 7.13 -51.93 -0.37 0.43 16 29 H 0.04 1.03 6.80 -51.93 -0.35 0.68 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 299.78 15.07 4.52 4.52 Total: -1.00 -33.97 299.78 -6.89 -40.87 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -3.49 Total: -1.63 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.27 Total: -0.78 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.29 Total: -46.10 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.07 Total: -12.49 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.35 Total: -1.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.97 -6.89 -40.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359386385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.219 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds