Wall clock time and date at job start Tue Mar 31 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00463 * 2 1 4 4 N 1.46499 * 109.47414 * 125.00440 * 3 2 1 5 5 C 1.46497 * 119.99756 * 262.83896 * 4 3 2 6 6 C 1.50694 * 109.47353 * 269.99938 * 5 4 3 7 7 H 1.08001 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00452 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00311 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99556 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46828 * 90.00411 * 10 8 6 12 12 H 1.48493 * 109.47185 * 210.00029 * 10 8 6 13 13 H 1.48501 * 109.47307 * 330.00414 * 10 8 6 14 14 C 1.34772 * 120.00071 * 82.83957 * 4 3 2 15 15 O 1.21530 * 119.99843 * 183.58465 * 14 4 3 16 16 C 1.48084 * 120.00090 * 3.58024 * 14 4 3 17 17 N 1.32773 * 119.74023 * 353.85887 * 16 14 4 18 18 C 1.31463 * 121.65950 * 179.97438 * 17 16 14 19 19 C 1.38639 * 120.94015 * 0.02562 * 18 17 16 20 20 C 1.38519 * 119.37506 * 0.26983 * 19 18 17 21 21 C 1.38803 * 118.47317 * 359.44424 * 20 19 18 22 22 Cl 1.73604 * 120.48586 * 180.25901 * 21 20 19 23 23 H 1.07990 * 120.00217 * 180.02562 * 1 2 3 24 24 H 1.08001 * 119.99236 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.99975 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47034 * 5.00226 * 3 2 1 27 27 H 1.09000 * 109.47049 * 245.00698 * 3 2 1 28 28 H 1.09004 * 109.47419 * 29.99944 * 5 4 3 29 29 H 1.09004 * 109.46950 * 149.99847 * 5 4 3 30 30 H 0.96995 * 119.99904 * 179.97438 * 9 8 6 31 31 H 1.08003 * 119.52780 * 180.02562 * 18 17 16 32 32 H 1.08001 * 120.31243 * 180.02562 * 19 18 17 33 33 H 1.07991 * 120.76430 * 179.72524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1313 5 6 2.6145 2.0050 2.3759 6 6 3.0412 3.4491 2.3161 7 1 3.5450 3.8275 1.4390 8 6 2.7893 4.2871 3.3817 9 7 3.1612 5.5475 3.3293 10 14 1.9185 3.6326 4.8991 11 1 2.9238 3.1167 5.8628 12 1 1.1403 4.7265 5.5338 13 1 0.9993 2.5341 4.5071 14 6 4.1988 0.7370 1.0272 15 8 4.9444 0.7025 1.9863 16 6 4.6143 0.1256 -0.2560 17 7 3.7515 0.0572 -1.2629 18 6 4.0803 -0.4771 -2.4181 19 6 5.3495 -0.9933 -2.6293 20 6 6.2803 -0.9489 -1.6044 21 6 5.9084 -0.3737 -0.3972 22 17 7.0355 -0.2843 0.9201 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5399 0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6213 1.4025 -0.9314 28 1 1.5333 1.9507 2.5034 29 1 3.1047 1.5158 3.2176 30 1 2.9837 6.1370 4.0788 31 1 3.3512 -0.5144 -3.2141 32 1 5.6089 -1.4296 -3.5826 33 1 7.2740 -1.3484 -1.7429 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359386385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:46 Heat of formation + Delta-G solvation = 29.115531 kcal Electronic energy + Delta-G solvation = -19569.173036 eV Core-core repulsion = 16429.122825 eV Total energy + Delta-G solvation = -3140.050211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80126 -39.92693 -37.72372 -37.13937 -35.10363 -33.75725 -33.59560 -32.28545 -30.14102 -27.02960 -25.94182 -24.63270 -23.80793 -21.41183 -20.46492 -19.11055 -18.45143 -18.17766 -17.35682 -16.89260 -16.43538 -16.23456 -15.95708 -15.61191 -14.98816 -14.75247 -14.35745 -14.29536 -14.09764 -13.55923 -13.32481 -13.14630 -13.04455 -12.78916 -12.51525 -12.25176 -12.19171 -11.92107 -11.75031 -11.02364 -10.86219 -10.84096 -10.29349 -10.07516 -9.94075 -9.36348 -8.35145 -6.40442 -0.48174 0.04390 1.06821 1.31203 1.35619 1.41386 1.45247 1.80933 2.24632 2.30138 2.75831 2.98812 3.14277 3.63050 3.71293 3.92009 4.14500 4.25159 4.33074 4.37960 4.67616 4.73125 4.82508 4.93356 4.96428 5.07128 5.17335 5.42924 5.50790 5.57853 5.80575 6.01674 6.22243 6.54430 6.60072 6.69726 7.17068 7.31751 8.81859 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.006482 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.788534 B = 4318.386787 C = 5331.121355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.128 3.872 4 N -0.577 5.577 5 C 0.227 3.773 6 C -0.536 4.536 7 H 0.027 0.973 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.946 3.054 11 H -0.274 1.274 12 H -0.272 1.272 13 H -0.241 1.241 14 C 0.540 3.460 15 O -0.558 6.558 16 C 0.066 3.934 17 N -0.447 5.447 18 C 0.092 3.908 19 C -0.113 4.113 20 C -0.074 4.074 21 C -0.058 4.058 22 Cl -0.044 7.044 23 H 0.116 0.884 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.126 0.874 28 H 0.047 0.953 29 H 0.022 0.978 30 H 0.269 0.731 31 H 0.209 0.791 32 H 0.199 0.801 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -17.648 -15.843 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.165 4.165 3 C 0.006 3.994 4 N -0.306 5.306 5 C 0.105 3.895 6 C -0.574 4.574 7 H 0.046 0.954 8 C -0.184 4.184 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.200 1.200 12 H -0.197 1.197 13 H -0.164 1.164 14 C 0.327 3.673 15 O -0.437 6.437 16 C -0.070 4.070 17 N -0.160 5.160 18 C -0.068 4.068 19 C -0.133 4.133 20 C -0.100 4.100 21 C -0.089 4.089 22 Cl -0.015 7.015 23 H 0.134 0.866 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.216 0.784 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.156 -17.117 -14.942 22.722 hybrid contribution 0.895 0.245 1.072 1.418 sum 0.739 -16.872 -13.870 21.854 Atomic orbital electron populations 1.23964 0.95198 1.02654 1.00286 1.22980 0.95924 0.97596 1.00038 1.21319 0.92140 0.95579 0.90350 1.47874 1.15219 1.51602 1.15912 1.19367 0.95876 0.90754 0.83489 1.21491 1.38584 0.94487 1.02870 0.95448 1.25807 0.96062 0.94765 1.01722 1.70039 1.48627 1.06316 1.33323 0.85737 0.79392 0.79147 0.78850 1.19999 1.19660 1.16399 1.18448 0.81983 0.79398 0.87505 1.90793 1.52728 1.60581 1.39583 1.20851 0.91132 1.00730 0.94317 1.68254 1.33077 1.13834 1.00802 1.23914 0.97095 0.91609 0.94131 1.22913 0.92515 0.97085 1.00785 1.22005 1.02930 0.95792 0.89293 1.22271 0.91561 1.02085 0.92982 1.98418 1.59181 1.96497 1.47439 0.86632 0.88368 0.88238 0.91801 0.85721 0.93494 0.95990 0.92171 0.77452 0.78387 0.80386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.48 14.32 67.78 0.97 -3.51 16 2 C -0.15 -4.25 8.73 25.65 0.22 -4.03 16 3 C 0.13 4.59 5.45 85.63 0.47 5.05 16 4 N -0.58 -26.26 2.46 -833.66 -2.05 -28.32 16 5 C 0.23 11.83 4.22 85.63 0.36 12.19 16 6 C -0.54 -32.89 9.94 25.60 0.25 -32.64 16 7 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 8 C 0.01 0.89 5.47 84.66 0.46 1.36 16 9 N -0.94 -60.92 13.96 21.45 0.30 -60.62 16 10 Si 0.95 45.88 27.47 68.60 1.88 47.77 16 11 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 14 C 0.54 24.55 7.57 86.86 0.66 25.20 16 15 O -0.56 -29.15 13.54 -3.81 -0.05 -29.20 16 16 C 0.07 2.29 6.63 41.90 0.28 2.56 16 17 N -0.45 -11.94 4.74 -184.85 -0.88 -12.82 16 18 C 0.09 1.43 11.18 84.84 0.95 2.38 16 19 C -0.11 -1.28 10.11 22.43 0.23 -1.06 16 20 C -0.07 -1.31 9.98 22.47 0.22 -1.09 16 21 C -0.06 -1.73 6.37 22.69 0.14 -1.59 16 22 Cl -0.04 -1.52 26.06 -2.72 -0.07 -1.59 16 23 H 0.12 2.26 8.06 -2.92 -0.02 2.24 16 24 H 0.10 2.37 7.84 -2.91 -0.02 2.35 16 25 H 0.10 2.89 7.60 -2.91 -0.02 2.87 16 26 H 0.06 2.39 7.67 -2.39 -0.02 2.37 16 27 H 0.13 4.19 5.18 -4.51 -0.02 4.17 16 28 H 0.05 2.28 7.13 -2.38 -0.02 2.27 16 29 H 0.02 1.21 6.80 -2.38 -0.02 1.20 16 30 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 31 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.20 0.24 8.06 -2.91 -0.02 0.21 16 33 H 0.18 2.00 8.06 -2.92 -0.02 1.98 16 Total: -1.00 -81.51 299.78 5.41 -76.10 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 1.06 Total: 3.85 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.22 Total: 4.84 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -2.63 Total: -101.75 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.05 Total: -29.20 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.77 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.59 kcal Total: -81.51 5.41 -76.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359386385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.213 kcal (2) G-P(sol) polarization free energy of solvation -81.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds