Wall clock time and date at job start Tue Mar 31 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99893 * 2 1 4 4 C 1.50699 * 109.47018 * 274.99922 * 3 2 1 5 5 H 1.07997 * 119.99982 * 0.02562 * 4 3 2 6 6 C 1.37869 * 119.99917 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00316 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00269 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47290 * 59.99984 * 8 6 4 10 10 H 1.48505 * 109.47423 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47129 * 300.00220 * 8 6 4 12 12 S 1.65606 * 120.00115 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.39948 * 336.45757 * 12 2 1 14 14 O 1.42103 * 106.39949 * 203.53870 * 12 2 1 15 15 N 1.65597 * 107.21744 * 89.99861 * 12 2 1 16 16 C 1.46506 * 120.00079 * 65.00334 * 15 12 2 17 17 H 1.08998 * 108.82566 * 335.42083 * 16 15 12 18 18 C 1.52329 * 108.86788 * 216.89513 * 16 15 12 19 19 C 1.54260 * 112.58812 * 239.18069 * 18 16 15 20 20 S 1.83956 * 102.57882 * 24.52393 * 19 18 16 21 21 C 1.54258 * 108.86907 * 93.95061 * 16 15 12 22 22 H 1.09001 * 109.47283 * 269.99546 * 1 2 3 23 23 H 1.08994 * 109.47246 * 30.00211 * 1 2 3 24 24 H 1.09003 * 109.47162 * 150.00220 * 1 2 3 25 25 H 1.08994 * 109.46631 * 34.99936 * 3 2 1 26 26 H 1.08997 * 109.46612 * 155.00125 * 3 2 1 27 27 H 0.97001 * 120.00791 * 179.97438 * 7 6 4 28 28 H 0.97005 * 120.00050 * 244.72355 * 15 12 2 29 29 H 1.09001 * 108.86825 * 359.97438 * 18 16 15 30 30 H 1.09001 * 108.87233 * 118.35911 * 18 16 15 31 31 H 1.08998 * 110.79325 * 142.80142 * 19 18 16 32 32 H 1.09010 * 110.78531 * 266.07050 * 19 18 16 33 33 H 1.08998 * 110.78718 * 214.56329 * 21 16 15 34 34 H 1.08993 * 110.78805 * 338.01913 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 2.9996 2.9508 -1.6663 7 7 3.5024 3.6475 -0.6706 8 14 3.1774 3.5672 -3.4207 9 1 1.8308 3.7727 -4.0121 10 1 3.9200 4.8533 -3.4207 11 1 3.9233 2.5655 -4.2241 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4067 0.5434 14 8 3.5760 -1.1569 0.5439 15 7 2.5381 -1.8580 -1.5826 16 6 3.3863 -1.0269 -2.4407 17 1 3.4004 -0.0118 -2.0440 18 6 2.7918 -0.9996 -3.8429 19 6 3.7658 -1.5404 -4.9100 20 16 4.8677 -2.6377 -3.9273 21 6 4.8219 -1.5908 -2.4195 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6500 2.0042 0.5894 26 1 3.1857 1.1177 0.4343 27 1 3.9658 4.4811 -0.8471 28 1 2.1233 -2.6587 -1.9401 29 1 1.8859 -1.6057 -3.8536 30 1 2.5285 0.0278 -4.0943 31 1 3.2303 -2.1098 -5.6696 32 1 4.3312 -0.7271 -5.3653 33 1 5.5545 -0.7864 -2.4857 34 1 4.9875 -2.1938 -1.5268 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360800591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:23 Heat of formation + Delta-G solvation = -98.741121 kcal Electronic energy + Delta-G solvation = -19433.097987 eV Core-core repulsion = 16424.991153 eV Total energy + Delta-G solvation = -3008.106834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.65932 -38.06993 -37.16588 -36.87592 -34.46708 -33.07493 -29.87593 -29.63122 -26.76558 -25.72339 -24.18886 -21.64379 -20.51398 -19.04402 -18.49348 -18.18890 -17.54751 -17.18395 -16.82762 -16.15056 -15.68548 -15.24899 -14.96179 -14.87788 -14.26237 -13.97817 -13.86442 -13.82659 -13.36954 -13.18659 -13.03104 -12.94808 -12.86284 -12.79365 -12.46028 -12.37422 -12.25620 -11.92009 -11.85322 -11.67833 -10.96459 -10.54105 -10.51787 -9.76901 -8.71682 -8.14733 -6.28365 -0.28376 0.93564 1.34844 1.48261 1.49496 1.56294 2.01018 2.44645 2.62979 3.16188 3.43816 3.56099 3.91030 4.00605 4.12762 4.13497 4.27400 4.54106 4.63588 4.73432 4.75187 4.84776 4.88954 5.09002 5.14809 5.27261 5.35247 5.51434 5.76190 5.87352 6.11316 6.22789 6.83063 7.40835 8.92815 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.010896 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.376594 B = 2569.050952 C = 4065.174343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.001 6.001 3 C 0.253 3.747 4 C -0.543 4.543 5 H 0.087 0.913 6 C 0.017 3.983 7 N -0.925 5.925 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.296 1.296 11 H -0.251 1.251 12 S 2.801 3.199 13 O -1.010 7.010 14 O -1.013 7.013 15 N -1.104 6.104 16 C 0.129 3.871 17 H 0.119 0.881 18 C -0.127 4.127 19 C -0.053 4.053 20 S -0.330 6.330 21 C -0.076 4.076 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.019 0.981 26 H 0.021 0.979 27 H 0.265 0.735 28 H 0.422 0.578 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -8.120 -8.508 12.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.843 5.843 3 C 0.129 3.871 4 C -0.582 4.582 5 H 0.105 0.895 6 C -0.184 4.184 7 N -0.564 5.564 8 Si 0.771 3.229 9 H -0.190 1.190 10 H -0.222 1.222 11 H -0.175 1.175 12 S 2.808 3.192 13 O -0.994 6.994 14 O -0.997 6.997 15 N -0.865 5.865 16 C 0.020 3.980 17 H 0.136 0.864 18 C -0.167 4.167 19 C -0.201 4.201 20 S -0.104 6.104 21 C -0.226 4.226 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.258 0.742 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.148 0.852 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.743 -9.341 -7.852 12.508 hybrid contribution -0.406 1.673 -0.461 1.783 sum -3.149 -7.668 -8.313 11.740 Atomic orbital electron populations 1.21452 0.77949 1.03503 1.01803 1.57491 1.15642 1.21985 1.89208 1.18866 0.90949 0.80111 0.97186 1.21830 1.36072 1.06823 0.93467 0.89527 1.25795 0.94900 0.96769 1.00904 1.70065 1.37368 1.15578 1.33416 0.85767 0.78846 0.77949 0.80301 1.18964 1.22247 1.17494 1.01166 0.72492 0.72029 0.73490 1.93530 1.67176 1.60823 1.77853 1.93540 1.42645 1.85440 1.78057 1.55858 1.62710 1.37161 1.30816 1.21790 0.86835 0.96312 0.93037 0.86364 1.22279 0.99983 1.04042 0.90438 1.24274 0.97047 0.99666 0.99073 1.87779 1.68593 1.37972 1.16095 1.24726 1.00094 1.00354 0.97421 0.92919 0.90459 0.90319 0.96311 0.96144 0.92624 0.74165 0.87830 0.89355 0.85154 0.88547 0.88772 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.05 10.31 127.77 1.32 4.36 16 2 N -1.00 -38.44 3.23 -543.24 -1.75 -40.19 16 3 C 0.25 11.89 5.27 85.63 0.45 12.35 16 4 C -0.54 -25.24 6.91 25.60 0.18 -25.06 16 5 H 0.09 3.61 6.41 -2.91 -0.02 3.59 16 6 C 0.02 0.83 5.46 84.65 0.46 1.29 16 7 N -0.93 -50.57 13.29 21.44 0.28 -50.28 16 8 Si 0.95 37.65 29.54 68.60 2.03 39.67 16 9 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 10 H -0.30 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 12 S 2.80 104.52 5.99 -56.49 -0.34 104.18 16 13 O -1.01 -39.09 17.21 -128.00 -2.20 -41.29 16 14 O -1.01 -45.60 16.42 -128.00 -2.10 -47.70 16 15 N -1.10 -32.71 5.29 -168.53 -0.89 -33.60 16 16 C 0.13 3.98 2.86 45.19 0.13 4.11 16 17 H 0.12 4.43 4.21 -2.39 -0.01 4.42 16 18 C -0.13 -3.02 5.98 30.80 0.18 -2.83 16 19 C -0.05 -1.10 7.46 72.41 0.54 -0.56 16 20 S -0.33 -8.92 23.26 -56.49 -1.31 -10.24 16 21 C -0.08 -2.37 7.11 72.41 0.52 -1.86 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 24 H 0.08 2.03 7.79 -2.39 -0.02 2.01 16 25 H 0.02 0.95 8.11 -2.39 -0.02 0.93 16 26 H 0.02 1.10 6.91 -2.39 -0.02 1.08 16 27 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 28 H 0.42 10.08 8.59 -96.74 -0.83 9.25 16 29 H 0.10 2.03 7.58 -2.39 -0.02 2.01 16 30 H 0.09 2.16 7.70 -2.39 -0.02 2.14 16 31 H 0.13 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.10 3.31 7.98 -2.39 -0.02 3.29 16 Total: -1.00 -62.19 301.12 -2.23 -64.42 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.28 Total: 23.22 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 3.78 Total: -8.20 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -2.36 Total: -124.07 kcal Atomic # 8 Polarization: -84.69 SS G_CDS: -4.30 Total: -88.99 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 16 Polarization: 95.60 SS G_CDS: -1.65 Total: 93.94 kcal Total: -62.19 -2.23 -64.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360800591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.318 kcal (2) G-P(sol) polarization free energy of solvation -62.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds