Wall clock time and date at job start Tue Mar 31 2020 01:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99778 * 2 1 4 4 H 1.48498 * 109.47052 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46802 * 299.99867 * 3 2 1 6 6 H 1.48503 * 109.47222 * 59.99663 * 3 2 1 7 7 C 1.37871 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99765 * 181.26719 * 7 2 1 9 9 C 1.50703 * 120.00232 * 1.26173 * 7 2 1 10 10 C 1.53001 * 115.54756 * 324.94868 * 9 7 2 11 11 N 1.46492 * 109.47176 * 305.55720 * 10 9 7 12 12 C 1.34777 * 120.00006 * 184.72507 * 11 10 9 13 13 O 1.21524 * 120.00033 * 5.42942 * 12 11 10 14 14 C 1.48081 * 120.00105 * 185.42424 * 12 11 10 15 15 C 1.39864 * 120.92947 * 355.40513 * 14 12 11 16 16 C 1.38084 * 119.01972 * 180.02562 * 15 14 12 17 17 N 1.31849 * 120.93580 * 359.97438 * 16 15 14 18 18 C 1.31752 * 122.07728 * 0.02562 * 17 16 15 19 19 C 1.38363 * 120.86835 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 120.52056 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49536 * 110.61299 * 9 7 2 22 22 C 1.52993 * 117.50000 * 179.27505 * 9 7 2 23 23 H 0.97002 * 120.00007 * 5.00630 * 1 2 3 24 24 H 1.09000 * 109.46903 * 185.55730 * 10 9 7 25 25 H 1.08999 * 109.47118 * 65.55852 * 10 9 7 26 26 H 0.97001 * 120.00376 * 4.72898 * 11 10 9 27 27 H 1.07998 * 120.49529 * 0.04451 * 15 14 12 28 28 H 1.08004 * 119.53071 * 179.72494 * 16 15 14 29 29 H 1.07995 * 119.56562 * 179.97438 * 18 17 16 30 30 H 1.08996 * 117.49915 * 215.00407 * 21 9 7 31 31 H 1.09002 * 117.50086 * 0.02874 * 21 9 7 32 32 H 1.09007 * 117.49854 * 359.97438 * 22 9 7 33 33 H 1.09000 * 117.49818 * 144.97586 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0212 9 6 1.2514 -2.4990 -0.0276 10 6 -0.0721 -2.5137 0.7400 11 7 0.1596 -2.0836 2.1210 12 6 -0.8502 -2.1097 3.0133 13 8 -1.9255 -2.5816 2.7005 14 6 -0.6493 -1.5634 4.3749 15 6 0.6055 -1.1032 4.7870 16 6 0.7485 -0.6021 6.0657 17 7 -0.2769 -0.5534 6.8932 18 6 -1.4759 -0.9758 6.5471 19 6 -1.7095 -1.4931 5.2853 20 17 -3.2929 -2.0476 4.8391 21 6 1.3363 -3.3362 -1.3054 22 6 2.0737 -3.7891 -0.0427 23 1 -0.4850 0.8369 -0.0733 24 1 -0.4820 -3.5237 0.7379 25 1 -0.7773 -1.8344 0.2613 26 1 1.0397 -1.7800 2.3934 27 1 1.4502 -1.1390 4.1150 28 1 1.7148 -0.2486 6.3941 29 1 -2.2871 -0.9173 7.2577 30 1 0.4495 -3.8975 -1.5992 31 1 1.9374 -2.9433 -2.1255 32 1 3.1596 -3.6939 -0.0328 33 1 1.6721 -4.6482 0.4945 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404745318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:50 Heat of formation + Delta-G solvation = 26.419727 kcal Electronic energy + Delta-G solvation = -19463.005066 eV Core-core repulsion = 16322.837955 eV Total energy + Delta-G solvation = -3140.167110 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38539 -38.53097 -36.75569 -36.32644 -33.39402 -32.42527 -32.14057 -31.00929 -26.51681 -25.59770 -24.10001 -23.25426 -21.32518 -20.09523 -19.40181 -17.92011 -16.75249 -16.26235 -16.00963 -15.11184 -14.97039 -14.65688 -14.60336 -14.03661 -13.88679 -13.54918 -13.05486 -12.57027 -12.13029 -11.93439 -11.76395 -11.48633 -11.19077 -10.95384 -10.81978 -10.58478 -10.34613 -10.03099 -9.74930 -9.72150 -9.13570 -8.97355 -8.93646 -8.90462 -8.38255 -7.96428 -6.11286 -4.30603 0.73252 0.90870 2.20477 3.13101 3.24457 3.26242 3.27797 3.74844 4.00696 4.20880 4.31768 4.65107 4.79772 4.84036 5.08009 5.20217 5.39492 5.52412 5.80453 5.89636 5.95405 6.23104 6.37798 6.45697 6.55256 6.63864 6.82283 6.99771 7.18888 7.43609 7.51027 7.72238 7.86370 8.21025 8.37837 8.71978 8.95415 9.33272 10.78823 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.006244 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.287315 B = 4483.081252 C = 5188.366320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.497 4.497 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.164 3.836 11 N -0.669 5.669 12 C 0.538 3.462 13 O -0.532 6.532 14 C -0.067 4.067 15 C -0.129 4.129 16 C 0.093 3.907 17 N -0.464 5.464 18 C 0.102 3.898 19 C -0.048 4.048 20 Cl -0.021 7.021 21 C -0.196 4.196 22 C -0.212 4.212 23 H 0.263 0.737 24 H 0.027 0.973 25 H 0.116 0.884 26 H 0.399 0.601 27 H 0.151 0.849 28 H 0.167 0.833 29 H 0.167 0.833 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -1.501 10.043 10.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.032 3.968 10 C 0.042 3.958 11 N -0.317 5.317 12 C 0.322 3.678 13 O -0.410 6.410 14 C -0.079 4.079 15 C -0.150 4.150 16 C -0.063 4.063 17 N -0.173 5.173 18 C -0.057 4.057 19 C -0.078 4.078 20 Cl 0.008 6.992 21 C -0.235 4.235 22 C -0.249 4.249 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.134 0.866 26 H 0.234 0.766 27 H 0.169 0.831 28 H 0.184 0.816 29 H 0.184 0.816 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.028 -1.407 10.608 10.750 hybrid contribution 0.757 0.707 -0.981 1.426 sum -0.271 -0.700 9.628 9.657 Atomic orbital electron populations 1.69854 1.05716 1.26813 1.48109 1.25013 0.94869 0.99132 0.94107 0.86536 0.80119 0.83512 0.77943 1.19631 1.20789 1.20843 1.20575 0.92586 0.88479 1.51763 0.91914 1.19245 0.93125 0.89818 0.94583 1.21173 0.98328 0.97045 0.79248 1.45616 1.11878 1.63193 1.10965 1.17833 0.85270 0.80947 0.83761 1.90790 1.25165 1.46135 1.78955 1.20653 0.93007 0.98375 0.95850 1.22525 0.97227 0.97268 0.97936 1.22808 0.97982 0.95746 0.89783 1.67641 0.99375 1.14452 1.35863 1.22756 0.95239 0.94826 0.92829 1.22247 0.89147 1.00993 0.95433 1.98413 1.20904 1.87171 1.92713 1.22936 1.01348 1.06467 0.92737 1.22967 0.98114 1.00420 1.03399 0.92613 0.95476 0.86606 0.76607 0.83126 0.81629 0.81618 0.91393 0.90145 0.90565 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.16 10.22 55.43 0.57 -21.60 16 2 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 3 Si 0.89 19.24 29.54 -169.99 -5.02 14.22 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.50 -11.97 8.31 -34.44 -0.29 -12.26 16 8 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 9 C 0.03 0.74 2.06 -155.66 -0.32 0.42 16 10 C 0.16 3.74 4.63 -4.05 -0.02 3.72 16 11 N -0.67 -13.75 5.13 -61.18 -0.31 -14.07 16 12 C 0.54 10.94 7.77 -12.22 -0.10 10.85 16 13 O -0.53 -12.14 14.17 5.34 0.08 -12.06 16 14 C -0.07 -1.13 5.91 -104.62 -0.62 -1.75 16 15 C -0.13 -1.81 9.61 -39.03 -0.38 -2.18 16 16 C 0.09 1.15 11.17 -17.60 -0.20 0.95 16 17 N -0.46 -6.25 10.33 -13.27 -0.14 -6.39 16 18 C 0.10 1.35 10.99 -17.54 -0.19 1.16 16 19 C -0.05 -0.75 6.38 -38.90 -0.25 -1.00 16 20 Cl -0.02 -0.34 26.25 -51.86 -1.36 -1.70 16 21 C -0.20 -4.14 9.96 -26.69 -0.27 -4.40 16 22 C -0.21 -4.23 9.92 -26.70 -0.26 -4.50 16 23 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 24 H 0.03 0.61 8.05 -51.93 -0.42 0.19 16 25 H 0.12 3.00 5.90 -51.93 -0.31 2.70 16 26 H 0.40 7.67 6.10 -40.82 -0.25 7.42 16 27 H 0.15 1.90 6.55 -52.49 -0.34 1.56 16 28 H 0.17 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 300.39 15.07 4.53 4.53 Total: -1.00 -27.55 300.39 -8.04 -35.59 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.40 Total: 8.79 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.98 Total: -7.31 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.12 Total: -42.05 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.36 Total: -1.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.55 -8.04 -35.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404745318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.009 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds